Wall clock time and date at job start Mon Mar 30 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.50197 * 2 1 4 4 C 1.53117 * 109.50564 * 239.92463 * 2 1 3 5 5 C 1.53119 * 109.16104 * 182.40558 * 4 2 1 6 6 C 1.53035 * 109.27849 * 57.65366 * 5 4 2 7 7 N 1.46853 * 109.52220 * 300.81591 * 6 5 4 8 8 C 1.46898 * 111.00182 * 185.83824 * 7 6 5 9 9 H 1.08999 * 109.47371 * 296.05400 * 8 7 6 10 10 C 1.50698 * 109.47235 * 176.04935 * 8 7 6 11 11 H 1.08001 * 119.99918 * 305.26186 * 10 8 7 12 12 C 1.37877 * 119.99772 * 124.98417 * 10 8 7 13 13 N 1.31523 * 119.99665 * 173.40095 * 12 10 8 14 14 Si 1.86798 * 120.00213 * 353.40419 * 12 10 8 15 15 H 1.48505 * 109.47182 * 84.67325 * 14 12 10 16 16 H 1.48508 * 109.47064 * 204.66918 * 14 12 10 17 17 H 1.48493 * 109.47063 * 324.67166 * 14 12 10 18 18 C 1.50705 * 109.46720 * 56.05099 * 8 7 6 19 19 C 1.38228 * 120.00060 * 46.52140 * 18 8 7 20 20 C 1.38239 * 119.99837 * 179.74463 * 19 18 8 21 21 C 1.38233 * 120.00047 * 0.54842 * 20 19 18 22 22 C 1.38237 * 119.99649 * 359.70136 * 21 20 19 23 23 C 1.38229 * 120.00318 * 0.02718 * 22 21 20 24 24 C 1.46858 * 111.19401 * 61.74841 * 7 6 5 25 25 H 1.08995 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47115 * 300.08277 * 1 2 3 27 27 H 1.08997 * 109.46668 * 60.07927 * 1 2 3 28 28 H 1.08999 * 109.52515 * 62.49308 * 4 2 1 29 29 H 1.09007 * 109.51959 * 302.31027 * 4 2 1 30 30 H 1.08996 * 109.50442 * 297.70879 * 5 4 2 31 31 H 1.08999 * 109.53349 * 177.61040 * 5 4 2 32 32 H 1.08997 * 109.46355 * 180.80735 * 6 5 4 33 33 H 1.09000 * 109.46487 * 60.83366 * 6 5 4 34 34 H 0.96999 * 119.99546 * 180.02562 * 13 12 10 35 35 H 1.08005 * 120.00199 * 359.97438 * 19 18 8 36 36 H 1.07997 * 119.99724 * 180.27434 * 20 19 18 37 37 H 1.07999 * 120.00172 * 179.72867 * 21 20 19 38 38 H 1.08001 * 119.99261 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.00303 * 179.97438 * 23 22 21 40 40 H 1.08993 * 109.46407 * 58.27084 * 24 7 6 41 41 H 1.09003 * 109.45622 * 178.24207 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2490 5 6 3.5713 -0.7714 -1.2110 6 6 4.0230 -1.4730 0.0719 7 7 3.5093 -0.7424 1.2377 8 6 4.0372 -1.3066 2.4871 9 1 3.6793 -2.3296 2.6036 10 6 3.5675 -0.4742 3.6521 11 1 3.7549 0.5893 3.6663 12 6 2.8934 -1.0694 4.6972 13 7 2.5977 -0.3710 5.7718 14 14 2.4001 -2.8677 4.5871 15 1 3.5386 -3.7204 5.0139 16 1 1.2354 -3.1168 5.4743 17 1 2.0341 -3.1957 3.1859 18 6 5.5436 -1.3036 2.4425 19 6 6.2204 -0.1731 2.0248 20 6 7.6024 -0.1686 1.9889 21 6 8.3071 -1.2984 2.3600 22 6 7.6300 -2.4307 2.7728 23 6 6.2483 -2.4334 2.8140 24 6 2.0409 -0.7238 1.2478 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5151 0.8892 27 1 -0.3632 0.5126 -0.8907 28 1 1.7157 -0.1863 -2.1399 29 1 1.6453 -1.7387 -1.2696 30 1 3.9679 0.2436 -1.2297 31 1 3.9402 -1.3223 -2.0761 32 1 5.1121 -1.4962 0.1090 33 1 3.6375 -2.4925 0.0834 34 1 2.1238 -0.7899 6.5072 35 1 5.6697 0.7080 1.7299 36 1 8.1312 0.7162 1.6668 37 1 9.3866 -1.2963 2.3278 38 1 8.1806 -3.3135 3.0623 39 1 5.7193 -3.3181 3.1361 40 1 1.6648 -1.7468 1.2538 41 1 1.6906 -0.2029 2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252114897.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:46 Heat of formation + Delta-G solvation = -2.106580 kcal Electronic energy + Delta-G solvation = -20161.677767 eV Core-core repulsion = 17425.794842 eV Total energy + Delta-G solvation = -2735.882925 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.68956 -39.26036 -36.07828 -34.33028 -32.83468 -31.78647 -31.55847 -28.87497 -27.36075 -25.47795 -23.61587 -23.17842 -22.72424 -21.10778 -20.48271 -19.03835 -17.57964 -16.98251 -16.44150 -16.05156 -15.64495 -15.44222 -15.00435 -14.86638 -14.81833 -14.55565 -14.11353 -13.86227 -13.74262 -13.46272 -13.33383 -12.92382 -12.81329 -12.59182 -12.50229 -12.09063 -11.89557 -11.82430 -11.65844 -11.51881 -11.40162 -11.11450 -10.97186 -10.78642 -9.65469 -9.34830 -8.93927 -8.36297 -6.36308 0.64725 0.70696 1.21584 1.23374 1.31084 2.22811 2.85849 3.17226 3.32171 3.90670 4.03005 4.05429 4.16607 4.23041 4.29901 4.35494 4.43518 4.49790 4.58724 4.63908 4.74051 4.77815 4.84431 4.90601 4.94464 4.99059 5.01176 5.11441 5.13585 5.27172 5.29826 5.33536 5.35849 5.46804 5.50789 5.59039 5.72780 5.77247 5.98701 6.11924 6.30382 6.46540 6.65533 6.75622 7.27050 8.80338 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013874 B = 0.010352 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.636226 B = 2704.148420 C = 4067.447316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.107 4.107 6 C 0.050 3.950 7 N -0.532 5.532 8 C 0.217 3.783 9 H 0.000 1.000 10 C -0.480 4.480 11 H 0.039 0.961 12 C 0.027 3.973 13 N -0.936 5.936 14 Si 0.922 3.078 15 H -0.264 1.264 16 H -0.282 1.282 17 H -0.261 1.261 18 C -0.056 4.056 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.121 4.121 23 C -0.156 4.156 24 C 0.074 3.926 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.102 0.898 40 H 0.003 0.997 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.173 -3.395 -13.626 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.145 4.145 6 C -0.078 4.078 7 N -0.256 5.256 8 C 0.111 3.889 9 H 0.018 0.982 10 C -0.519 4.519 11 H 0.057 0.943 12 C -0.172 4.172 13 N -0.575 5.575 14 Si 0.748 3.252 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.185 1.185 18 C -0.057 4.057 19 C -0.128 4.128 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.139 4.139 23 C -0.175 4.175 24 C -0.054 4.054 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.159 0.841 39 H 0.120 0.880 40 H 0.021 0.979 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.238 -2.923 -13.482 14.432 hybrid contribution -0.917 -1.482 1.019 2.019 sum 3.322 -4.405 -12.463 13.629 Atomic orbital electron populations 1.21752 0.94119 1.01739 1.02161 1.21169 0.95867 0.99610 0.93856 0.91305 1.21608 0.95306 1.00173 0.97388 1.21540 0.96079 1.01167 0.95699 1.22155 0.99724 0.94218 0.91702 1.62061 1.07615 1.54045 1.01902 1.18612 0.89122 0.92575 0.88613 0.98225 1.20814 1.34563 0.94830 1.01702 0.94318 1.25713 0.95517 1.01267 0.94725 1.70016 1.42040 1.38641 1.06844 0.86119 0.78860 0.81856 0.78393 1.18951 1.20799 1.18535 1.20191 0.95942 0.93919 0.95678 1.20940 0.94555 0.97457 0.99826 1.21418 0.93434 0.99301 1.00122 1.21343 1.00790 0.92867 1.00487 1.21287 0.93114 0.99601 0.99870 1.21116 0.95590 0.97764 1.02996 1.21909 0.87754 0.96992 0.98792 0.92985 0.93572 0.90399 0.89722 0.92674 0.91502 0.89902 0.91469 0.97236 0.92367 0.87314 0.84175 0.83312 0.84090 0.87988 0.97881 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.20 71.98 0.66 -3.07 16 2 C -0.09 -2.71 2.88 -10.74 -0.03 -2.74 16 3 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.11 -2.78 5.29 30.67 0.16 -2.61 16 5 C -0.11 -2.92 6.09 30.65 0.19 -2.73 16 6 C 0.05 1.76 5.14 86.32 0.44 2.20 16 7 N -0.53 -22.49 4.05 -879.91 -3.56 -26.05 16 8 C 0.22 10.43 1.65 43.42 0.07 10.50 16 9 H 0.00 0.01 4.47 -2.39 -0.01 0.00 16 10 C -0.48 -27.37 7.44 25.60 0.19 -27.18 16 11 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 12 C 0.03 1.55 5.47 84.65 0.46 2.02 16 13 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 14 Si 0.92 44.91 27.04 68.60 1.85 46.76 16 15 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 16 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 17 H -0.26 -12.24 6.67 99.48 0.66 -11.58 16 18 C -0.06 -2.45 3.46 -19.87 -0.07 -2.51 16 19 C -0.11 -4.34 8.50 22.27 0.19 -4.15 16 20 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 21 C -0.14 -3.94 10.05 22.27 0.22 -3.72 16 22 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 23 C -0.16 -6.14 9.67 22.27 0.22 -5.93 16 24 C 0.07 3.04 4.55 86.32 0.39 3.43 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.39 6.26 -2.39 -0.01 2.38 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.11 4.56 7.92 -2.91 -0.02 4.53 16 36 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 37 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 39 H 0.10 4.01 7.99 -2.91 -0.02 3.98 16 40 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.05 2.63 6.88 -2.39 -0.02 2.61 16 Total: -1.00 -65.30 320.88 3.07 -62.23 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.93 Total: 18.62 kcal Atomic # 6 Polarization: -47.41 SS G_CDS: 3.55 Total: -43.87 kcal Atomic # 7 Polarization: -80.48 SS G_CDS: -3.27 Total: -83.74 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.85 Total: 46.76 kcal Total: -65.30 3.07 -62.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252114897.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.127 kcal (2) G-P(sol) polarization free energy of solvation -65.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds