Wall clock time and date at job start Mon Mar 30 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.29223 * 2 1 4 4 C 1.54262 * 110.32678 * 237.86847 * 2 1 3 5 5 C 1.54380 * 105.06249 * 241.00374 * 4 2 1 6 6 H 1.09005 * 110.40912 * 94.92229 * 5 4 2 7 7 C 1.52995 * 110.41053 * 217.36774 * 5 4 2 8 8 N 1.48560 * 104.59388 * 336.15002 * 5 4 2 9 9 C 1.46897 * 110.99845 * 159.04154 * 8 5 4 10 10 H 1.09001 * 109.47371 * 313.98233 * 9 8 5 11 11 C 1.50701 * 109.47130 * 193.98715 * 9 8 5 12 12 H 1.08002 * 119.99613 * 303.75693 * 11 9 8 13 13 C 1.37877 * 120.00497 * 123.75666 * 11 9 8 14 14 N 1.31510 * 120.00221 * 171.61605 * 13 11 9 15 15 Si 1.86802 * 119.99702 * 351.61728 * 13 11 9 16 16 H 1.48503 * 109.46925 * 88.19673 * 15 13 11 17 17 H 1.48494 * 109.46895 * 208.19785 * 15 13 11 18 18 H 1.48496 * 109.47238 * 328.19800 * 15 13 11 19 19 C 1.50700 * 109.47617 * 73.98474 * 9 8 5 20 20 C 1.38240 * 120.00010 * 45.87189 * 19 9 8 21 21 C 1.38232 * 120.00047 * 179.81494 * 20 19 9 22 22 C 1.38238 * 119.99681 * 0.41680 * 21 20 19 23 23 C 1.38230 * 120.00486 * 359.81508 * 22 21 20 24 24 C 1.38234 * 119.99572 * 359.97438 * 23 22 21 25 25 C 1.48554 * 104.22291 * 39.47942 * 8 5 4 26 26 H 1.08998 * 109.47119 * 182.12797 * 1 2 3 27 27 H 1.08995 * 109.47399 * 302.13321 * 1 2 3 28 28 H 1.09004 * 109.46841 * 62.12828 * 1 2 3 29 29 H 1.08994 * 110.32466 * 122.10594 * 4 2 1 30 30 H 1.09004 * 110.32029 * 359.90375 * 4 2 1 31 31 H 1.09006 * 109.46785 * 175.18009 * 7 5 4 32 32 H 1.09000 * 109.46955 * 295.16970 * 7 5 4 33 33 H 1.08996 * 109.47575 * 55.17591 * 7 5 4 34 34 H 0.97000 * 120.00249 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.99694 * 359.97438 * 20 19 9 36 36 H 1.07997 * 119.99842 * 180.20539 * 21 20 19 37 37 H 1.08000 * 119.99204 * 179.79360 * 22 21 20 38 38 H 1.07998 * 120.00256 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99676 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.41227 * 79.29958 * 25 8 5 41 41 H 1.09002 * 110.40866 * 201.73818 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0658 -0.7694 -1.2250 5 6 2.8829 -1.9401 -0.6375 6 1 2.2682 -2.8381 -0.5734 7 6 4.1267 -2.2029 -1.4888 8 7 3.2720 -1.4807 0.7206 9 6 3.6118 -2.6193 1.5843 10 1 2.8537 -3.3952 1.4776 11 6 3.6649 -2.1629 3.0195 12 1 4.3186 -1.3517 3.3044 13 6 2.8789 -2.7807 3.9690 14 7 3.0426 -2.4986 5.2430 15 14 1.5816 -4.0187 3.4457 16 1 2.1895 -5.3716 3.3725 17 1 0.4759 -4.0258 4.4369 18 1 1.0482 -3.6428 2.1118 19 6 4.9554 -3.1712 1.1827 20 6 6.0145 -2.3129 0.9527 21 6 7.2479 -2.8194 0.5881 22 6 7.4200 -4.1835 0.4449 23 6 6.3598 -5.0414 0.6702 24 6 5.1275 -4.5352 1.0391 25 6 2.0683 -0.7707 1.2246 26 1 -0.3633 -1.0269 0.0382 27 1 -0.3634 0.5466 0.8702 28 1 -0.3633 0.4805 -0.9085 29 1 2.7068 -0.1247 -1.8263 30 1 1.2388 -1.1485 -1.8254 31 1 4.7354 -2.9729 -1.0146 32 1 3.8238 -2.5388 -2.4805 33 1 4.7069 -1.2845 -1.5776 34 1 2.4894 -2.9329 5.9110 35 1 5.8788 -1.2470 1.0606 36 1 8.0761 -2.1491 0.4117 37 1 8.3828 -4.5789 0.1568 38 1 6.4942 -6.1071 0.5579 39 1 4.2990 -5.2055 1.2146 40 1 1.3263 -1.4856 1.5801 41 1 2.3413 -0.0774 2.0202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253078734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:40 Heat of formation + Delta-G solvation = 22.886818 kcal Electronic energy + Delta-G solvation = -20368.676989 eV Core-core repulsion = 17633.877859 eV Total energy + Delta-G solvation = -2734.799130 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31334 -37.87231 -34.04769 -32.36379 -31.16847 -30.16619 -29.98080 -26.82187 -26.06242 -24.55389 -22.43304 -21.86584 -20.35235 -19.49374 -19.06376 -17.01703 -16.16912 -15.14986 -15.04434 -14.71112 -14.23132 -13.95897 -13.45726 -13.15281 -12.81376 -12.67088 -12.56598 -12.53815 -12.15516 -11.88676 -11.66945 -11.46609 -11.21461 -11.03934 -10.98956 -10.69095 -10.34449 -10.19628 -10.10876 -10.00663 -9.89585 -9.82614 -9.41382 -8.69461 -8.18231 -7.73610 -7.43127 -6.22440 -4.20300 2.13518 2.19538 3.16080 3.23183 3.25645 4.26557 4.52669 4.84443 5.10807 5.15625 5.21065 5.41979 5.55625 5.59445 5.61992 5.73041 5.81148 5.89029 5.93789 6.02108 6.08954 6.14058 6.21420 6.29846 6.32066 6.34838 6.37813 6.45348 6.54260 6.64116 6.72029 6.78834 6.83737 6.88230 6.97016 7.17443 7.23114 7.35779 7.53724 7.79328 7.94254 8.03287 8.50972 8.88995 9.40036 10.89927 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.011012 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.741172 B = 2542.142608 C = 3828.603376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.073 0.927 4 C -0.113 4.113 5 C 0.051 3.949 6 H 0.036 0.964 7 C -0.138 4.138 8 N -0.497 5.497 9 C 0.200 3.800 10 H 0.018 0.982 11 C -0.494 4.494 12 H 0.083 0.917 13 C 0.079 3.921 14 N -0.885 5.885 15 Si 0.864 3.136 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 C -0.018 4.018 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.138 4.138 25 C 0.063 3.937 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.266 0.734 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.037 0.963 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 0.346 -11.745 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.057 4.057 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.222 5.222 9 C 0.094 3.906 10 H 0.036 0.964 11 C -0.533 4.533 12 H 0.101 0.899 13 C -0.124 4.124 14 N -0.522 5.522 15 Si 0.692 3.308 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.019 4.019 20 C -0.108 4.108 21 C -0.148 4.148 22 C -0.167 4.167 23 C -0.143 4.143 24 C -0.157 4.157 25 C -0.065 4.065 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.056 0.944 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.438 0.647 -11.536 11.562 hybrid contribution -1.426 -1.431 0.057 2.021 sum -0.987 -0.783 -11.479 11.548 Atomic orbital electron populations 1.21842 0.95633 1.01410 1.01030 1.21967 0.94687 0.99767 0.95859 0.90899 1.22424 0.98581 0.97003 0.97076 1.22629 0.95179 0.95662 0.92278 0.94560 1.21885 0.97702 1.02293 0.97677 1.65533 1.31990 1.24383 1.00253 1.18969 0.89420 0.88836 0.93422 0.96420 1.20767 1.24988 1.19084 0.88437 0.89895 1.25032 0.96716 0.95903 0.94797 1.69885 1.39264 1.42959 1.00065 0.87072 0.82610 0.82544 0.78581 1.19981 1.21133 1.19154 1.20192 0.97465 0.92352 0.91908 1.20933 0.91586 1.00302 0.97952 1.21061 0.97271 0.95016 1.01411 1.20841 0.98130 0.93809 1.03928 1.20888 0.93416 0.98670 1.01281 1.20957 0.97202 0.95354 1.02156 1.22796 0.91244 0.96922 0.95559 0.93090 0.92699 0.93194 0.91655 0.92450 0.91548 0.93981 0.92398 0.92369 0.85839 0.87280 0.87498 0.87393 0.87569 0.94421 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.92 37.16 0.33 -1.62 16 2 C -0.10 -1.64 3.65 -89.24 -0.33 -1.96 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.11 -1.71 6.20 -25.35 -0.16 -1.86 16 5 C 0.05 0.91 2.86 -66.07 -0.19 0.73 16 6 H 0.04 0.69 7.76 -51.93 -0.40 0.29 16 7 C -0.14 -2.24 8.45 37.15 0.31 -1.93 16 8 N -0.50 -10.18 4.42 -217.00 -0.96 -11.14 16 9 C 0.20 4.60 1.52 -70.02 -0.11 4.49 16 10 H 0.02 0.44 4.11 -51.93 -0.21 0.22 16 11 C -0.49 -13.24 7.61 -34.44 -0.26 -13.50 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -26.04 13.96 55.43 0.77 -25.26 16 15 Si 0.86 20.92 26.53 -169.99 -4.51 16.41 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.23 6.11 56.52 0.35 -5.88 16 19 C -0.02 -0.38 2.72 -104.62 -0.28 -0.67 16 20 C -0.09 -1.77 7.82 -39.58 -0.31 -2.08 16 21 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 22 C -0.15 -2.44 10.05 -39.58 -0.40 -2.84 16 23 C -0.12 -2.15 10.05 -39.59 -0.40 -2.55 16 24 C -0.14 -2.76 9.31 -39.58 -0.37 -3.13 16 25 C 0.06 1.25 5.00 -2.19 -0.01 1.24 16 26 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.92 7.82 -51.93 -0.41 0.51 16 30 H 0.06 0.79 7.71 -51.93 -0.40 0.39 16 31 H 0.07 1.17 4.83 -51.93 -0.25 0.92 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 34 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.12 2.51 7.90 -52.49 -0.41 2.09 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.11 2.09 7.99 -52.49 -0.42 1.67 16 40 H 0.04 0.81 6.59 -51.93 -0.34 0.47 16 41 H 0.08 1.77 7.88 -51.93 -0.41 1.36 16 LS Contribution 316.77 15.07 4.77 4.77 Total: -1.00 -28.20 316.77 -9.25 -37.45 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.67 Total: 3.98 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.66 Total: -26.21 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.19 Total: -36.40 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.51 Total: 16.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.20 -9.25 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253078734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.337 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds