Wall clock time and date at job start Mon Mar 30 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.29223 * 2 1 4 4 C 1.54262 * 110.32678 * 237.86847 * 2 1 3 5 5 C 1.54380 * 105.06249 * 241.00374 * 4 2 1 6 6 H 1.09005 * 110.40912 * 94.92229 * 5 4 2 7 7 C 1.52995 * 110.41053 * 217.36774 * 5 4 2 8 8 N 1.48560 * 104.59388 * 336.15002 * 5 4 2 9 9 C 1.46897 * 110.99845 * 159.04154 * 8 5 4 10 10 H 1.09001 * 109.47371 * 313.98233 * 9 8 5 11 11 C 1.50701 * 109.47130 * 193.98715 * 9 8 5 12 12 H 1.08002 * 119.99613 * 303.75693 * 11 9 8 13 13 C 1.37877 * 120.00497 * 123.75666 * 11 9 8 14 14 N 1.31510 * 120.00221 * 171.61605 * 13 11 9 15 15 Si 1.86802 * 119.99702 * 351.61728 * 13 11 9 16 16 H 1.48503 * 109.46925 * 88.19673 * 15 13 11 17 17 H 1.48494 * 109.46895 * 208.19785 * 15 13 11 18 18 H 1.48496 * 109.47238 * 328.19800 * 15 13 11 19 19 C 1.50700 * 109.47617 * 73.98474 * 9 8 5 20 20 C 1.38240 * 120.00010 * 45.87189 * 19 9 8 21 21 C 1.38232 * 120.00047 * 179.81494 * 20 19 9 22 22 C 1.38238 * 119.99681 * 0.41680 * 21 20 19 23 23 C 1.38230 * 120.00486 * 359.81508 * 22 21 20 24 24 C 1.38234 * 119.99572 * 359.97438 * 23 22 21 25 25 C 1.48554 * 104.22291 * 39.47942 * 8 5 4 26 26 H 1.08998 * 109.47119 * 182.12797 * 1 2 3 27 27 H 1.08995 * 109.47399 * 302.13321 * 1 2 3 28 28 H 1.09004 * 109.46841 * 62.12828 * 1 2 3 29 29 H 1.08994 * 110.32466 * 122.10594 * 4 2 1 30 30 H 1.09004 * 110.32029 * 359.90375 * 4 2 1 31 31 H 1.09006 * 109.46785 * 175.18009 * 7 5 4 32 32 H 1.09000 * 109.46955 * 295.16970 * 7 5 4 33 33 H 1.08996 * 109.47575 * 55.17591 * 7 5 4 34 34 H 0.97000 * 120.00249 * 179.97438 * 14 13 11 35 35 H 1.07997 * 119.99694 * 359.97438 * 20 19 9 36 36 H 1.07997 * 119.99842 * 180.20539 * 21 20 19 37 37 H 1.08000 * 119.99204 * 179.79360 * 22 21 20 38 38 H 1.07998 * 120.00256 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99676 * 179.97438 * 24 23 22 40 40 H 1.09006 * 110.41227 * 79.29958 * 25 8 5 41 41 H 1.09002 * 110.40866 * 201.73818 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0658 -0.7694 -1.2250 5 6 2.8829 -1.9401 -0.6375 6 1 2.2682 -2.8381 -0.5734 7 6 4.1267 -2.2029 -1.4888 8 7 3.2720 -1.4807 0.7206 9 6 3.6118 -2.6193 1.5843 10 1 2.8537 -3.3952 1.4776 11 6 3.6649 -2.1629 3.0195 12 1 4.3186 -1.3517 3.3044 13 6 2.8789 -2.7807 3.9690 14 7 3.0426 -2.4986 5.2430 15 14 1.5816 -4.0187 3.4457 16 1 2.1895 -5.3716 3.3725 17 1 0.4759 -4.0258 4.4369 18 1 1.0482 -3.6428 2.1118 19 6 4.9554 -3.1712 1.1827 20 6 6.0145 -2.3129 0.9527 21 6 7.2479 -2.8194 0.5881 22 6 7.4200 -4.1835 0.4449 23 6 6.3598 -5.0414 0.6702 24 6 5.1275 -4.5352 1.0391 25 6 2.0683 -0.7707 1.2246 26 1 -0.3633 -1.0269 0.0382 27 1 -0.3634 0.5466 0.8702 28 1 -0.3633 0.4805 -0.9085 29 1 2.7068 -0.1247 -1.8263 30 1 1.2388 -1.1485 -1.8254 31 1 4.7354 -2.9729 -1.0146 32 1 3.8238 -2.5388 -2.4805 33 1 4.7069 -1.2845 -1.5776 34 1 2.4894 -2.9329 5.9110 35 1 5.8788 -1.2470 1.0606 36 1 8.0761 -2.1491 0.4117 37 1 8.3828 -4.5789 0.1568 38 1 6.4942 -6.1071 0.5579 39 1 4.2990 -5.2055 1.2146 40 1 1.3263 -1.4856 1.5801 41 1 2.3413 -0.0774 2.0202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253078734.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:40 Heat of formation + Delta-G solvation = 6.976963 kcal Electronic energy + Delta-G solvation = -20369.366892 eV Core-core repulsion = 17633.877859 eV Total energy + Delta-G solvation = -2735.489033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83448 -39.29482 -35.73551 -34.13638 -32.72307 -31.60797 -31.42283 -28.54477 -27.38816 -26.14548 -24.03066 -23.31842 -21.84329 -21.04663 -20.49391 -19.06559 -17.61052 -16.83118 -16.47474 -16.27755 -15.84723 -15.39250 -15.09111 -14.79380 -14.45842 -14.18245 -14.04142 -13.79863 -13.43551 -13.29954 -13.25649 -12.97505 -12.90219 -12.64028 -12.38409 -12.19911 -11.96617 -11.80414 -11.61031 -11.58489 -11.34144 -11.30100 -11.15053 -10.81716 -9.62512 -9.24692 -9.10674 -8.38142 -6.38473 0.67959 0.74888 1.19978 1.21724 1.29435 2.21106 2.88148 3.19358 3.37388 3.77166 3.87806 4.09016 4.20342 4.26938 4.29724 4.37177 4.45559 4.53690 4.58308 4.63658 4.74206 4.81330 4.86787 4.91475 4.95937 4.96875 5.00208 5.19050 5.19703 5.21777 5.24045 5.35363 5.41647 5.46022 5.49743 5.54495 5.75602 5.80440 6.01544 6.07784 6.25789 6.36372 6.63310 6.68644 7.25285 8.78662 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014204 B = 0.011012 C = 0.007312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.741172 B = 2542.142608 C = 3828.603376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.082 0.918 4 C -0.104 4.104 5 C 0.047 3.953 6 H 0.022 0.978 7 C -0.130 4.130 8 N -0.503 5.503 9 C 0.208 3.792 10 H 0.005 0.995 11 C -0.487 4.487 12 H 0.037 0.963 13 C 0.028 3.972 14 N -0.935 5.935 15 Si 0.921 3.079 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.257 1.257 19 C -0.043 4.043 20 C -0.104 4.104 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.121 4.121 24 C -0.158 4.158 25 C 0.059 3.941 26 H 0.042 0.958 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.015 0.985 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.604 -0.546 -14.880 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.142 4.142 5 C -0.062 4.062 6 H 0.040 0.960 7 C -0.187 4.187 8 N -0.227 5.227 9 C 0.101 3.899 10 H 0.022 0.978 11 C -0.526 4.526 12 H 0.055 0.945 13 C -0.171 4.171 14 N -0.575 5.575 15 Si 0.747 3.253 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.182 1.182 19 C -0.044 4.044 20 C -0.122 4.122 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.139 4.139 24 C -0.177 4.177 25 C -0.069 4.069 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.119 0.881 40 H 0.033 0.967 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.009 -0.242 -14.698 14.734 hybrid contribution -1.457 -1.105 0.988 2.079 sum -0.448 -1.347 -13.709 13.783 Atomic orbital electron populations 1.21815 0.93801 1.01294 1.02582 1.21942 0.96192 0.99585 0.93880 0.89920 1.22418 0.99110 0.95892 0.96772 1.22756 0.96316 0.96240 0.90850 0.96000 1.21809 0.96620 1.01950 0.98365 1.65436 1.32380 1.23459 1.01436 1.18753 0.90593 0.88985 0.91587 0.97786 1.20832 1.23372 1.17422 0.90938 0.94457 1.25711 0.98747 0.98017 0.94633 1.70017 1.41004 1.45171 1.01266 0.86142 0.80206 0.80445 0.78531 1.19144 1.20744 1.18218 1.20060 0.96701 0.93370 0.94289 1.20869 0.92721 0.99351 0.99290 1.21387 0.96769 0.96288 0.99932 1.21303 0.99429 0.93129 1.01742 1.21251 0.92335 1.00574 0.99696 1.21086 0.98609 0.94669 1.03316 1.22782 0.90746 0.96353 0.97048 0.93903 0.92739 0.90209 0.89910 0.90221 0.93108 0.91368 0.92179 0.92355 0.87581 0.84385 0.83502 0.84255 0.88143 0.96692 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.92 71.98 0.64 -2.88 16 2 C -0.10 -2.95 3.65 -9.90 -0.04 -2.98 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C -0.10 -2.88 6.20 31.49 0.20 -2.69 16 5 C 0.05 1.62 2.86 45.06 0.13 1.75 16 6 H 0.02 0.82 7.76 -2.38 -0.02 0.80 16 7 C -0.13 -3.97 8.45 71.98 0.61 -3.36 16 8 N -0.50 -21.12 4.42 -840.47 -3.72 -24.83 16 9 C 0.21 9.92 1.52 43.42 0.07 9.98 16 10 H 0.00 0.23 4.11 -2.39 -0.01 0.22 16 11 C -0.49 -27.70 7.61 25.60 0.19 -27.50 16 12 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 13 C 0.03 1.63 5.47 84.66 0.46 2.09 16 14 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 15 Si 0.92 44.74 26.53 68.60 1.82 46.56 16 16 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 18 H -0.26 -11.98 6.11 99.48 0.61 -11.37 16 19 C -0.04 -1.86 2.72 -19.86 -0.05 -1.92 16 20 C -0.10 -4.11 7.82 22.27 0.17 -3.94 16 21 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 22 C -0.14 -4.00 10.05 22.27 0.22 -3.77 16 23 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 24 C -0.16 -6.21 9.31 22.27 0.21 -6.00 16 25 C 0.06 2.43 5.00 86.45 0.43 2.86 16 26 H 0.04 1.16 8.10 -2.39 -0.02 1.14 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.08 2.04 7.82 -2.39 -0.02 2.02 16 30 H 0.08 1.89 7.71 -2.38 -0.02 1.87 16 31 H 0.05 1.72 4.83 -2.38 -0.01 1.71 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.79 8.09 -2.39 -0.02 1.77 16 34 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.11 4.47 7.90 -2.91 -0.02 4.45 16 36 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.10 3.95 7.99 -2.91 -0.02 3.93 16 40 H 0.01 0.67 6.59 -2.38 -0.02 0.65 16 41 H 0.05 2.46 7.88 -2.39 -0.02 2.44 16 Total: -1.00 -65.24 316.77 2.98 -62.26 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: 0.88 Total: 19.44 kcal Atomic # 6 Polarization: -49.46 SS G_CDS: 3.69 Total: -45.77 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -3.42 Total: -82.49 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.82 Total: 46.56 kcal Total: -65.24 2.98 -62.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253078734.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.238 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds