Wall clock time and date at job start Mon Mar 30 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.87433 * 2 1 4 4 C 1.55138 * 110.99087 * 236.15336 * 2 1 3 5 5 C 1.54319 * 103.01967 * 206.25667 * 4 2 1 6 6 H 1.08997 * 109.88438 * 262.87353 * 5 4 2 7 7 C 1.52998 * 110.02371 * 141.76792 * 5 4 2 8 8 N 1.47433 * 107.23446 * 22.28394 * 5 4 2 9 9 C 1.46898 * 111.00102 * 123.25789 * 8 5 4 10 10 H 1.09000 * 109.47308 * 312.89583 * 9 8 5 11 11 C 1.50700 * 109.47308 * 192.89609 * 9 8 5 12 12 H 1.08001 * 120.00088 * 304.18453 * 11 9 8 13 13 C 1.37879 * 120.00102 * 124.17971 * 11 9 8 14 14 N 1.31511 * 120.00119 * 5.45515 * 13 11 9 15 15 Si 1.86797 * 120.00168 * 185.45121 * 13 11 9 16 16 H 1.48502 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47156 * 300.00399 * 15 13 11 18 18 H 1.48497 * 109.47123 * 60.00076 * 15 13 11 19 19 C 1.50703 * 109.47331 * 72.89761 * 9 8 5 20 20 C 1.38235 * 119.99721 * 35.09841 * 19 9 8 21 21 C 1.38235 * 119.99635 * 179.81135 * 20 19 9 22 22 C 1.38236 * 120.00321 * 0.40181 * 21 20 19 23 23 C 1.38236 * 119.99822 * 359.85670 * 22 21 20 24 24 C 1.38233 * 120.00112 * 215.38003 * 19 9 8 25 25 C 1.47851 * 108.56895 * 0.98815 * 8 5 4 26 26 H 1.08999 * 109.47531 * 183.84452 * 1 2 3 27 27 H 1.09004 * 109.47161 * 303.84487 * 1 2 3 28 28 H 1.08998 * 109.47533 * 63.84353 * 1 2 3 29 29 H 1.09005 * 110.70819 * 87.87143 * 4 2 1 30 30 H 1.09003 * 110.70596 * 324.64241 * 4 2 1 31 31 H 1.09010 * 109.46965 * 299.24927 * 7 5 4 32 32 H 1.09005 * 109.47502 * 59.24248 * 7 5 4 33 33 H 1.08998 * 109.47644 * 179.24988 * 7 5 4 34 34 H 0.96993 * 120.00580 * 174.99198 * 14 13 11 35 35 H 1.08004 * 120.00320 * 0.02562 * 20 19 9 36 36 H 1.08003 * 120.00141 * 180.23452 * 21 20 19 37 37 H 1.07995 * 119.99965 * 179.83030 * 22 21 20 38 38 H 1.07990 * 120.00199 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.99809 * 359.97311 * 24 19 9 40 40 H 1.08994 * 110.36945 * 94.73304 * 25 8 5 41 41 H 1.08995 * 110.37331 * 217.07143 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4691 -1.2709 -0.7009 6 1 4.2420 -0.5941 -1.0652 7 6 3.7524 -2.6938 -1.1868 8 7 3.4312 -1.2423 0.7727 9 6 3.7611 -2.5594 1.3334 10 1 3.1936 -3.3294 0.8107 11 6 3.4095 -2.5840 2.7986 12 1 3.8252 -1.8438 3.4662 13 6 2.5569 -3.5513 3.2869 14 7 2.1355 -4.5154 2.4979 15 14 2.0004 -3.4926 5.0691 16 1 1.0945 -4.6370 5.3428 17 1 3.1851 -3.5753 5.9606 18 1 1.2796 -2.2189 5.3208 19 6 5.2357 -2.8216 1.1663 20 6 6.1386 -1.7797 1.2667 21 6 7.4915 -2.0209 1.1173 22 6 7.9409 -3.3025 0.8592 23 6 7.0375 -4.3434 0.7535 24 6 5.6848 -4.1029 0.9069 25 6 2.0848 -0.8063 1.2006 26 1 -0.3634 -1.0253 0.0689 27 1 -0.3634 0.5724 0.8536 28 1 -0.3634 0.4530 -0.9224 29 1 2.1884 -0.1685 -2.0806 30 1 1.4474 -1.6631 -1.4206 31 1 2.9945 -3.3703 -0.7917 32 1 3.7279 -2.7173 -2.2763 33 1 4.7365 -3.0075 -0.8387 34 1 1.5951 -5.2357 2.8583 35 1 5.7874 -0.7779 1.4653 36 1 8.1974 -1.2076 1.1994 37 1 8.9976 -3.4903 0.7398 38 1 7.3884 -5.3445 0.5516 39 1 4.9790 -4.9162 0.8244 40 1 1.4523 -1.6708 1.4020 41 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253078735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:43 Heat of formation + Delta-G solvation = 29.610344 kcal Electronic energy + Delta-G solvation = -20399.487634 eV Core-core repulsion = 17664.980058 eV Total energy + Delta-G solvation = -2734.507576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.35860 -37.70571 -33.96757 -32.36065 -30.60326 -30.11221 -29.65094 -26.75624 -25.80725 -24.23392 -22.73537 -21.50629 -20.50782 -19.51565 -18.46459 -16.60883 -15.93076 -15.32909 -14.91588 -14.36039 -14.12363 -13.75832 -13.37502 -13.11987 -12.90455 -12.47409 -12.41662 -12.19636 -11.87870 -11.62160 -11.34208 -11.22118 -11.01084 -10.98599 -10.94446 -10.58572 -10.28380 -10.15818 -10.06313 -9.89274 -9.81280 -9.46500 -9.28063 -8.64867 -8.02086 -7.57038 -6.99659 -6.13963 -4.18615 2.29987 2.35327 3.26072 3.30472 3.34345 4.32181 4.71431 5.00918 5.18950 5.25752 5.35796 5.54495 5.67627 5.77053 5.81472 5.88473 5.96236 6.03434 6.08208 6.13422 6.23066 6.32338 6.39308 6.44141 6.48545 6.49825 6.55711 6.63248 6.85819 6.89309 6.93254 6.96178 7.04145 7.13325 7.34121 7.38645 7.50973 7.75077 7.77644 7.81633 8.05239 8.33739 8.60417 8.97245 9.45187 10.90443 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010823 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.467333 B = 2586.475519 C = 4034.122461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.070 3.930 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.527 5.527 9 C 0.209 3.791 10 H 0.072 0.928 11 C -0.497 4.497 12 H 0.059 0.941 13 C 0.070 3.930 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.287 1.287 17 H -0.275 1.275 18 H -0.274 1.274 19 C -0.012 4.012 20 C -0.113 4.113 21 C -0.132 4.132 22 C -0.157 4.157 23 C -0.129 4.129 24 C -0.124 4.124 25 C 0.078 3.922 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.907 4.415 -5.799 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.090 0.910 4 C -0.169 4.169 5 C -0.038 4.038 6 H 0.083 0.917 7 C -0.235 4.235 8 N -0.251 5.251 9 C 0.104 3.896 10 H 0.089 0.911 11 C -0.535 4.535 12 H 0.077 0.923 13 C -0.134 4.134 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.213 1.213 17 H -0.201 1.201 18 H -0.199 1.199 19 C -0.013 4.013 20 C -0.131 4.131 21 C -0.150 4.150 22 C -0.175 4.175 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.050 4.050 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.074 0.926 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.107 4.616 -5.622 7.573 hybrid contribution -0.760 -0.734 0.766 1.305 sum 1.346 3.881 -4.856 6.361 Atomic orbital electron populations 1.21680 0.95473 1.01724 1.00654 1.22363 0.94798 0.99252 0.96536 0.91042 1.22893 0.97328 0.99271 0.97377 1.22271 0.95394 0.95630 0.90529 0.91739 1.22581 1.03758 0.97987 0.99198 1.63915 1.26375 1.30786 1.04045 1.18916 0.87690 0.87400 0.95639 0.91093 1.20926 1.26174 1.13894 0.92519 0.92261 1.24991 0.95114 0.95433 0.97828 1.69841 1.36483 1.11271 1.35183 0.86618 0.78779 0.77685 0.84835 1.21267 1.20089 1.19931 1.20444 0.98072 0.92003 0.90775 1.21041 0.91878 0.99906 1.00276 1.21024 0.95916 0.96196 1.01871 1.20797 0.98279 0.93558 1.04848 1.20942 0.93706 0.98009 1.02092 1.21033 0.94922 0.97325 1.00942 1.22630 0.89597 0.97610 0.95183 0.92677 0.92945 0.93441 0.92413 0.91863 0.91643 0.94236 0.90764 0.92509 0.85990 0.87720 0.87853 0.87626 0.86558 0.92632 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.31 37.16 0.35 -1.65 16 2 C -0.11 -1.82 3.63 -88.48 -0.32 -2.15 16 3 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 4 C -0.13 -2.14 5.94 -24.91 -0.15 -2.29 16 5 C 0.07 1.31 3.78 -66.73 -0.25 1.06 16 6 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 7 C -0.18 -3.34 7.74 37.16 0.29 -3.05 16 8 N -0.53 -11.12 4.09 -218.21 -0.89 -12.01 16 9 C 0.21 4.93 1.47 -70.02 -0.10 4.82 16 10 H 0.07 1.84 4.30 -51.93 -0.22 1.61 16 11 C -0.50 -12.97 6.89 -34.44 -0.24 -13.21 16 12 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 13 C 0.07 1.84 5.44 -17.82 -0.10 1.74 16 14 N -0.89 -24.16 12.63 55.43 0.70 -23.46 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 C -0.01 -0.26 2.75 -104.62 -0.29 -0.55 16 20 C -0.11 -2.32 9.29 -39.58 -0.37 -2.68 16 21 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 22 C -0.16 -2.74 10.05 -39.58 -0.40 -3.13 16 23 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 24 C -0.12 -2.63 8.40 -39.58 -0.33 -2.96 16 25 C 0.08 1.59 5.05 -2.29 -0.01 1.57 16 26 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.07 7.75 -51.93 -0.40 0.67 16 31 H 0.06 1.37 6.35 -51.92 -0.33 1.04 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.47 4.29 -51.93 -0.22 1.25 16 34 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 35 H 0.12 2.53 7.56 -52.48 -0.40 2.13 16 36 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 37 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.12 2.58 8.06 -52.49 -0.42 2.15 16 40 H 0.06 1.30 7.29 -51.93 -0.38 0.92 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -26.45 318.38 -9.70 -36.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.57 Total: 6.84 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: -2.72 Total: -28.06 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.19 Total: -35.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.45 -9.70 -36.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253078735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.764 kcal (2) G-P(sol) polarization free energy of solvation -26.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds