Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.87433 * 2 1 4 4 C 1.55138 * 110.99087 * 236.15336 * 2 1 3 5 5 C 1.54319 * 103.01967 * 206.25667 * 4 2 1 6 6 H 1.08997 * 109.88438 * 262.87353 * 5 4 2 7 7 C 1.52998 * 110.02371 * 141.76792 * 5 4 2 8 8 N 1.47433 * 107.23446 * 22.28394 * 5 4 2 9 9 C 1.46898 * 111.00102 * 123.25789 * 8 5 4 10 10 H 1.09000 * 109.47308 * 312.89583 * 9 8 5 11 11 C 1.50700 * 109.47308 * 192.89609 * 9 8 5 12 12 H 1.08001 * 120.00088 * 304.18453 * 11 9 8 13 13 C 1.37879 * 120.00102 * 124.17971 * 11 9 8 14 14 N 1.31511 * 120.00119 * 5.45515 * 13 11 9 15 15 Si 1.86797 * 120.00168 * 185.45121 * 13 11 9 16 16 H 1.48502 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48499 * 109.47156 * 300.00399 * 15 13 11 18 18 H 1.48497 * 109.47123 * 60.00076 * 15 13 11 19 19 C 1.50703 * 109.47331 * 72.89761 * 9 8 5 20 20 C 1.38235 * 119.99721 * 35.09841 * 19 9 8 21 21 C 1.38235 * 119.99635 * 179.81135 * 20 19 9 22 22 C 1.38236 * 120.00321 * 0.40181 * 21 20 19 23 23 C 1.38236 * 119.99822 * 359.85670 * 22 21 20 24 24 C 1.38233 * 120.00112 * 215.38003 * 19 9 8 25 25 C 1.47851 * 108.56895 * 0.98815 * 8 5 4 26 26 H 1.08999 * 109.47531 * 183.84452 * 1 2 3 27 27 H 1.09004 * 109.47161 * 303.84487 * 1 2 3 28 28 H 1.08998 * 109.47533 * 63.84353 * 1 2 3 29 29 H 1.09005 * 110.70819 * 87.87143 * 4 2 1 30 30 H 1.09003 * 110.70596 * 324.64241 * 4 2 1 31 31 H 1.09010 * 109.46965 * 299.24927 * 7 5 4 32 32 H 1.09005 * 109.47502 * 59.24248 * 7 5 4 33 33 H 1.08998 * 109.47644 * 179.24988 * 7 5 4 34 34 H 0.96993 * 120.00580 * 174.99198 * 14 13 11 35 35 H 1.08004 * 120.00320 * 0.02562 * 20 19 9 36 36 H 1.08003 * 120.00141 * 180.23452 * 21 20 19 37 37 H 1.07995 * 119.99965 * 179.83030 * 22 21 20 38 38 H 1.07990 * 120.00199 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.99809 * 359.97311 * 24 19 9 40 40 H 1.08994 * 110.36945 * 94.73304 * 25 8 5 41 41 H 1.08995 * 110.37331 * 217.07143 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0185 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4691 -1.2709 -0.7009 6 1 4.2420 -0.5941 -1.0652 7 6 3.7524 -2.6938 -1.1868 8 7 3.4312 -1.2423 0.7727 9 6 3.7611 -2.5594 1.3334 10 1 3.1936 -3.3294 0.8107 11 6 3.4095 -2.5840 2.7986 12 1 3.8252 -1.8438 3.4662 13 6 2.5569 -3.5513 3.2869 14 7 2.1355 -4.5154 2.4979 15 14 2.0004 -3.4926 5.0691 16 1 1.0945 -4.6370 5.3428 17 1 3.1851 -3.5753 5.9606 18 1 1.2796 -2.2189 5.3208 19 6 5.2357 -2.8216 1.1663 20 6 6.1386 -1.7797 1.2667 21 6 7.4915 -2.0209 1.1173 22 6 7.9409 -3.3025 0.8592 23 6 7.0375 -4.3434 0.7535 24 6 5.6848 -4.1029 0.9069 25 6 2.0848 -0.8063 1.2006 26 1 -0.3634 -1.0253 0.0689 27 1 -0.3634 0.5724 0.8536 28 1 -0.3634 0.4530 -0.9224 29 1 2.1884 -0.1685 -2.0806 30 1 1.4474 -1.6631 -1.4206 31 1 2.9945 -3.3703 -0.7917 32 1 3.7279 -2.7173 -2.2763 33 1 4.7365 -3.0075 -0.8387 34 1 1.5951 -5.2357 2.8583 35 1 5.7874 -0.7779 1.4653 36 1 8.1974 -1.2076 1.1994 37 1 8.9976 -3.4903 0.7398 38 1 7.3884 -5.3445 0.5516 39 1 4.9790 -4.9162 0.8244 40 1 1.4523 -1.6708 1.4020 41 1 2.1544 -0.1720 2.0842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253078735.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = 16.669665 kcal Electronic energy + Delta-G solvation = -20400.048784 eV Core-core repulsion = 17664.980058 eV Total energy + Delta-G solvation = -2735.068726 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94959 -39.20988 -35.64897 -34.10464 -32.22738 -31.63636 -31.18859 -28.35346 -27.45945 -25.85861 -24.40148 -23.03914 -22.06783 -20.94261 -20.10900 -18.50741 -17.47448 -16.91850 -16.70343 -15.97093 -15.72287 -15.32490 -14.91426 -14.64683 -14.40936 -13.98391 -13.95634 -13.73182 -13.40160 -13.10264 -13.04717 -12.87187 -12.80480 -12.69667 -12.40775 -12.24862 -11.86438 -11.67255 -11.55902 -11.37768 -11.33829 -11.18246 -11.07934 -10.65143 -9.54975 -9.17315 -8.72596 -8.14369 -6.26012 0.75608 0.82736 1.36822 1.37908 1.45243 2.37290 3.01308 3.27686 3.54223 3.82942 3.94419 4.09525 4.29991 4.33994 4.41189 4.48194 4.56794 4.62138 4.65197 4.73806 4.79235 4.89114 4.95478 4.97056 4.99443 5.04816 5.15468 5.23058 5.29334 5.31430 5.39294 5.41754 5.48865 5.60473 5.63776 5.71823 5.82998 5.87470 6.06741 6.15780 6.44028 6.50691 6.86808 6.98215 7.40830 8.87740 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.010823 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.467333 B = 2586.475519 C = 4034.122461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.123 4.123 5 C 0.066 3.934 6 H 0.077 0.923 7 C -0.167 4.167 8 N -0.531 5.531 9 C 0.218 3.782 10 H 0.041 0.959 11 C -0.506 4.506 12 H 0.043 0.957 13 C 0.028 3.972 14 N -0.917 5.917 15 Si 0.945 3.055 16 H -0.283 1.283 17 H -0.275 1.275 18 H -0.269 1.269 19 C -0.033 4.033 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.145 4.145 25 C 0.077 3.923 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.263 0.737 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 5.846 -6.761 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.107 0.893 4 C -0.162 4.162 5 C -0.042 4.042 6 H 0.095 0.905 7 C -0.225 4.225 8 N -0.255 5.255 9 C 0.112 3.888 10 H 0.058 0.942 11 C -0.545 4.545 12 H 0.061 0.939 13 C -0.173 4.173 14 N -0.557 5.557 15 Si 0.771 3.229 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.194 1.194 19 C -0.034 4.034 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.165 4.165 23 C -0.145 4.145 24 C -0.164 4.164 25 C -0.051 4.051 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.688 6.058 -6.587 9.679 hybrid contribution -1.147 -1.166 1.023 1.930 sum 2.540 4.892 -5.564 7.832 Atomic orbital electron populations 1.21645 0.93833 1.01078 1.02494 1.22335 0.96135 0.99233 0.94191 0.89289 1.22862 0.95469 0.99404 0.98419 1.22388 0.97242 0.95671 0.88902 0.90515 1.22439 1.01966 0.97477 1.00586 1.63835 1.26526 1.29199 1.05923 1.18634 0.88730 0.87538 0.93890 0.94170 1.21096 1.26133 1.13298 0.93925 0.93892 1.25598 0.95311 0.95251 1.01097 1.69962 1.37370 1.11853 1.36476 0.85809 0.78345 0.77823 0.80970 1.20827 1.20003 1.19402 1.20327 0.97332 0.92993 0.92741 1.21048 0.93097 0.99020 1.01287 1.21386 0.95160 0.97737 1.00066 1.21243 1.00052 0.92608 1.02568 1.21247 0.92462 0.99942 1.00836 1.20976 0.96160 0.96410 1.02878 1.22569 0.89113 0.96512 0.96898 0.94456 0.92191 0.90623 0.89089 0.92861 0.94832 0.91628 0.91898 0.92744 0.86766 0.84359 0.83799 0.84987 0.89077 0.96567 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 9.31 71.98 0.67 -3.01 16 2 C -0.10 -3.19 3.63 -9.41 -0.03 -3.23 16 3 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 4 C -0.12 -3.87 5.94 31.77 0.19 -3.69 16 5 C 0.07 2.44 3.78 45.26 0.17 2.61 16 6 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 7 C -0.17 -6.40 7.74 71.98 0.56 -5.85 16 8 N -0.53 -23.03 4.09 -844.29 -3.45 -26.48 16 9 C 0.22 10.82 1.47 43.42 0.06 10.88 16 10 H 0.04 2.24 4.30 -2.39 -0.01 2.23 16 11 C -0.51 -27.75 6.89 25.60 0.18 -27.57 16 12 H 0.04 2.43 7.82 -2.91 -0.02 2.41 16 13 C 0.03 1.52 5.44 84.66 0.46 1.98 16 14 N -0.92 -52.54 12.63 21.45 0.27 -52.27 16 15 Si 0.94 43.94 29.54 68.60 2.03 45.97 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.03 -1.49 2.75 -19.87 -0.05 -1.55 16 20 C -0.13 -5.12 9.29 22.27 0.21 -4.92 16 21 C -0.13 -4.19 10.05 22.27 0.22 -3.97 16 22 C -0.15 -4.60 10.05 22.27 0.22 -4.38 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.15 -6.33 8.40 22.27 0.19 -6.14 16 25 C 0.08 3.27 5.05 86.77 0.44 3.70 16 26 H 0.04 1.15 8.07 -2.39 -0.02 1.13 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 30 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 31 H 0.03 1.48 6.35 -2.38 -0.02 1.46 16 32 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.06 2.56 4.29 -2.39 -0.01 2.55 16 34 H 0.26 14.46 8.32 -92.71 -0.77 13.69 16 35 H 0.11 4.73 7.56 -2.91 -0.02 4.71 16 36 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 37 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.13 3.89 8.06 -2.92 -0.02 3.86 16 39 H 0.09 4.32 8.06 -2.91 -0.02 4.30 16 40 H 0.02 0.80 7.29 -2.39 -0.02 0.78 16 41 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -60.34 318.38 3.53 -56.81 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.98 Total: 25.34 kcal Atomic # 6 Polarization: -53.07 SS G_CDS: 3.70 Total: -49.37 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.18 Total: -78.75 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.34 3.53 -56.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253078735.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.478 kcal (2) G-P(sol) polarization free energy of solvation -60.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds