Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.43406 * 2 1 4 4 C 1.54270 * 110.60032 * 237.38204 * 2 1 3 5 5 C 1.53874 * 106.59954 * 217.65628 * 4 2 1 6 6 C 1.54271 * 106.59514 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.59611 * 264.87328 * 6 5 4 8 8 N 1.46902 * 110.48368 * 142.28871 * 6 5 4 9 9 C 1.46901 * 110.99732 * 90.22126 * 8 6 5 10 10 H 1.09001 * 109.47464 * 35.00131 * 9 8 6 11 11 C 1.50697 * 109.47275 * 274.99461 * 9 8 6 12 12 H 1.07994 * 120.00547 * 325.45566 * 11 9 8 13 13 C 1.37880 * 119.99842 * 145.45428 * 11 9 8 14 14 N 1.31519 * 119.99972 * 4.15041 * 13 11 9 15 15 Si 1.86801 * 120.00153 * 184.15750 * 13 11 9 16 16 H 1.48507 * 109.46970 * 59.99704 * 15 13 11 17 17 H 1.48491 * 109.47511 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46881 * 300.00276 * 15 13 11 19 19 C 1.50700 * 109.46783 * 154.99786 * 9 8 6 20 20 C 1.38242 * 120.00238 * 45.14031 * 19 9 8 21 21 C 1.38233 * 120.00265 * 180.28140 * 20 19 9 22 22 C 1.38240 * 119.99719 * 359.46015 * 21 20 19 23 23 C 1.38228 * 119.99945 * 0.26100 * 22 21 20 24 24 C 1.38233 * 120.00400 * 224.86327 * 19 9 8 25 25 C 1.54883 * 104.20047 * 23.60853 * 6 5 4 26 26 H 1.08996 * 109.47366 * 297.45828 * 1 2 3 27 27 H 1.09006 * 109.46889 * 57.46215 * 1 2 3 28 28 H 1.09000 * 109.47039 * 177.45077 * 1 2 3 29 29 H 1.09001 * 110.03034 * 336.94218 * 4 2 1 30 30 H 1.09002 * 110.02987 * 98.32021 * 4 2 1 31 31 H 1.08992 * 110.03011 * 240.71805 * 5 4 2 32 32 H 1.08997 * 110.03148 * 119.28352 * 5 4 2 33 33 H 1.00899 * 111.00235 * 326.26940 * 8 6 5 34 34 H 0.96995 * 119.99533 * 179.97438 * 14 13 11 35 35 H 1.07999 * 119.99627 * 0.02562 * 20 19 9 36 36 H 1.08001 * 120.00149 * 179.74241 * 21 20 19 37 37 H 1.08003 * 119.99660 * 180.28269 * 22 21 20 38 38 H 1.08008 * 119.99852 * 180.02562 * 23 22 21 39 39 H 1.08008 * 119.99919 * 359.97438 * 24 19 9 40 40 H 1.09004 * 110.75640 * 80.36846 * 25 6 5 41 41 H 1.08995 * 110.76009 * 203.74608 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0728 -0.7784 -1.2163 5 6 3.3203 -1.5376 -0.7313 6 6 3.4916 -1.1945 0.7630 7 1 4.1894 -0.3666 0.8888 8 7 3.9523 -2.3718 1.5112 9 6 5.4196 -2.4289 1.5514 10 1 5.8212 -1.4172 1.6086 11 6 5.9305 -3.1024 0.3038 12 1 5.3648 -3.9040 -0.1474 13 6 7.1202 -2.6950 -0.2616 14 7 7.8496 -1.7755 0.3320 15 14 7.6961 -3.4489 -1.8708 16 1 6.6877 -3.1870 -2.9290 17 1 8.9941 -2.8445 -2.2641 18 1 7.8638 -4.9143 -1.6987 19 6 5.8588 -3.2129 2.7611 20 6 5.2373 -4.4075 3.0737 21 6 5.6362 -5.1237 4.1867 22 6 6.6642 -4.6509 4.9809 23 6 7.2895 -3.4593 4.6651 24 6 6.8870 -2.7404 3.5552 25 6 2.0716 -0.7813 1.2232 26 1 -0.3634 0.4738 0.9118 27 1 -0.3633 0.5528 -0.8664 28 1 -0.3633 -1.0266 -0.0457 29 1 1.3222 -1.4833 -1.5737 30 1 2.3429 -0.0852 -2.0129 31 1 4.1965 -1.2127 -1.2922 32 1 3.1750 -2.6109 -0.8533 33 1 3.5679 -3.2201 1.1230 34 1 8.6867 -1.4893 -0.0657 35 1 4.4373 -4.7791 2.4506 36 1 5.1479 -6.0549 4.4332 37 1 6.9789 -5.2128 5.8479 38 1 8.0929 -3.0901 5.2854 39 1 7.3759 -1.8094 3.3083 40 1 1.4589 -1.6606 1.4224 41 1 2.1221 -0.1373 2.1011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253262058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = 0.522453 kcal Electronic energy + Delta-G solvation = -19554.966055 eV Core-core repulsion = 16819.197133 eV Total energy + Delta-G solvation = -2735.768921 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.58283 -37.87743 -34.77581 -32.27684 -30.73569 -29.90657 -29.17056 -27.61025 -25.72131 -23.98849 -22.55196 -21.51040 -19.87850 -19.70130 -19.23339 -16.65917 -15.99570 -15.46534 -14.82020 -14.53330 -14.19573 -13.80312 -13.43282 -13.02201 -12.89576 -12.73295 -12.39665 -12.29587 -11.98830 -11.73147 -11.51824 -11.27202 -10.97602 -10.87852 -10.70031 -10.43836 -10.32432 -10.21946 -10.18932 -10.08455 -9.91215 -9.67918 -9.41722 -8.57924 -7.94615 -7.65423 -7.23059 -6.11343 -4.21417 2.39403 2.45352 3.23629 3.28798 3.31512 4.32100 4.80553 4.96740 5.08433 5.17388 5.20649 5.54745 5.66991 5.73337 5.74026 5.82229 5.87428 5.93793 5.96068 6.04080 6.21836 6.22753 6.31894 6.32742 6.40197 6.49210 6.51849 6.59123 6.68991 6.76582 6.87362 6.97975 7.01582 7.10432 7.26376 7.40507 7.53616 7.71636 7.81274 8.04596 8.09684 8.22402 8.63455 8.90763 9.44545 10.90521 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.007731 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.191143 B = 3620.936752 C = 5056.707483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.068 0.932 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.101 3.899 7 H 0.073 0.927 8 N -0.683 5.683 9 C 0.230 3.770 10 H 0.070 0.930 11 C -0.532 4.532 12 H 0.056 0.944 13 C 0.074 3.926 14 N -0.881 5.881 15 Si 0.887 3.113 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.009 4.009 20 C -0.113 4.113 21 C -0.133 4.133 22 C -0.157 4.157 23 C -0.130 4.130 24 C -0.112 4.112 25 C -0.108 4.108 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.327 0.673 34 H 0.264 0.736 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 0.967 1.819 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.176 4.176 6 C -0.010 4.010 7 H 0.091 0.909 8 N -0.310 5.310 9 C 0.122 3.878 10 H 0.088 0.912 11 C -0.571 4.571 12 H 0.074 0.926 13 C -0.130 4.130 14 N -0.518 5.518 15 Si 0.715 3.285 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.010 4.010 20 C -0.131 4.131 21 C -0.152 4.152 22 C -0.175 4.175 23 C -0.148 4.148 24 C -0.130 4.130 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.289 1.388 2.425 8.747 hybrid contribution 0.867 -0.835 -1.935 2.279 sum -7.421 0.553 0.490 7.458 Atomic orbital electron populations 1.21782 0.95698 1.01394 1.00888 1.21964 0.94740 0.99231 0.96000 0.91335 1.22208 0.97870 0.98562 0.97084 1.22744 0.96799 0.99735 0.98369 1.22164 0.94593 0.94211 0.90012 0.90872 1.60903 1.11242 1.04061 1.54822 1.18420 0.82934 0.97022 0.89383 0.91187 1.21556 1.07061 1.19728 1.08763 0.92606 1.24938 0.96370 0.94610 0.97125 1.69888 1.13450 1.29670 1.38752 0.86729 0.78042 0.79684 0.84060 1.20167 1.21211 1.20198 1.20482 0.92811 0.94185 0.93509 1.20807 1.00184 0.95442 0.96678 1.20930 0.98250 0.99424 0.96562 1.20767 0.98844 0.97455 1.00442 1.20965 0.99947 0.95830 0.98096 1.21049 0.97542 1.00392 0.94064 1.22569 0.96770 0.99060 0.96197 0.93035 0.93349 0.92856 0.92600 0.92850 0.91662 0.92105 0.85613 0.92610 0.87399 0.87843 0.87941 0.87745 0.86408 0.91664 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.14 37.16 0.34 -1.25 16 2 C -0.10 -1.36 3.45 -88.94 -0.31 -1.66 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.73 6.38 -25.61 -0.16 -1.89 16 5 C -0.14 -2.43 5.73 -25.61 -0.15 -2.58 16 6 C 0.10 1.87 3.17 -66.05 -0.21 1.66 16 7 H 0.07 1.50 7.44 -51.93 -0.39 1.11 16 8 N -0.68 -13.77 5.71 -100.44 -0.57 -14.34 16 9 C 0.23 5.39 2.26 -70.02 -0.16 5.23 16 10 H 0.07 1.85 6.48 -51.93 -0.34 1.51 16 11 C -0.53 -13.47 7.49 -34.44 -0.26 -13.73 16 12 H 0.06 1.42 7.75 -52.49 -0.41 1.01 16 13 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 14 N -0.88 -23.95 12.84 55.43 0.71 -23.24 16 15 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.01 -0.20 4.93 -104.62 -0.52 -0.71 16 20 C -0.11 -2.34 9.28 -39.58 -0.37 -2.71 16 21 C -0.13 -2.50 10.05 -39.58 -0.40 -2.89 16 22 C -0.16 -2.86 10.05 -39.58 -0.40 -3.26 16 23 C -0.13 -2.53 10.05 -39.59 -0.40 -2.93 16 24 C -0.11 -2.49 9.67 -39.58 -0.38 -2.87 16 25 C -0.11 -1.65 6.00 -24.73 -0.15 -1.80 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 29 H 0.06 0.76 7.80 -51.93 -0.41 0.35 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.06 1.11 7.52 -51.93 -0.39 0.72 16 33 H 0.33 6.46 7.19 -39.29 -0.28 6.18 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.11 2.13 7.43 -52.49 -0.39 1.74 16 36 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.12 2.72 8.00 -52.48 -0.42 2.30 16 40 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -26.19 329.59 -10.32 -36.51 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -6.80 Total: 9.99 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -3.61 Total: -29.56 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.14 Total: -37.58 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.19 -10.32 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253262058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.030 kcal (2) G-P(sol) polarization free energy of solvation -26.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds