Wall clock time and date at job start Mon Mar 30 2020 06:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.43406 * 2 1 4 4 C 1.54270 * 110.60032 * 237.38204 * 2 1 3 5 5 C 1.53874 * 106.59954 * 217.65628 * 4 2 1 6 6 C 1.54271 * 106.59514 * 0.02562 * 5 4 2 7 7 H 1.09002 * 110.59611 * 264.87328 * 6 5 4 8 8 N 1.46902 * 110.48368 * 142.28871 * 6 5 4 9 9 C 1.46901 * 110.99732 * 90.22126 * 8 6 5 10 10 H 1.09001 * 109.47464 * 35.00131 * 9 8 6 11 11 C 1.50697 * 109.47275 * 274.99461 * 9 8 6 12 12 H 1.07994 * 120.00547 * 325.45566 * 11 9 8 13 13 C 1.37880 * 119.99842 * 145.45428 * 11 9 8 14 14 N 1.31519 * 119.99972 * 4.15041 * 13 11 9 15 15 Si 1.86801 * 120.00153 * 184.15750 * 13 11 9 16 16 H 1.48507 * 109.46970 * 59.99704 * 15 13 11 17 17 H 1.48491 * 109.47511 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46881 * 300.00276 * 15 13 11 19 19 C 1.50700 * 109.46783 * 154.99786 * 9 8 6 20 20 C 1.38242 * 120.00238 * 45.14031 * 19 9 8 21 21 C 1.38233 * 120.00265 * 180.28140 * 20 19 9 22 22 C 1.38240 * 119.99719 * 359.46015 * 21 20 19 23 23 C 1.38228 * 119.99945 * 0.26100 * 22 21 20 24 24 C 1.38233 * 120.00400 * 224.86327 * 19 9 8 25 25 C 1.54883 * 104.20047 * 23.60853 * 6 5 4 26 26 H 1.08996 * 109.47366 * 297.45828 * 1 2 3 27 27 H 1.09006 * 109.46889 * 57.46215 * 1 2 3 28 28 H 1.09000 * 109.47039 * 177.45077 * 1 2 3 29 29 H 1.09001 * 110.03034 * 336.94218 * 4 2 1 30 30 H 1.09002 * 110.02987 * 98.32021 * 4 2 1 31 31 H 1.08992 * 110.03011 * 240.71805 * 5 4 2 32 32 H 1.08997 * 110.03148 * 119.28352 * 5 4 2 33 33 H 1.00899 * 111.00235 * 326.26940 * 8 6 5 34 34 H 0.96995 * 119.99533 * 179.97438 * 14 13 11 35 35 H 1.07999 * 119.99627 * 0.02562 * 20 19 9 36 36 H 1.08001 * 120.00149 * 179.74241 * 21 20 19 37 37 H 1.08003 * 119.99660 * 180.28269 * 22 21 20 38 38 H 1.08008 * 119.99852 * 180.02562 * 23 22 21 39 39 H 1.08008 * 119.99919 * 359.97438 * 24 19 9 40 40 H 1.09004 * 110.75640 * 80.36846 * 25 6 5 41 41 H 1.08995 * 110.76009 * 203.74608 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0728 -0.7784 -1.2163 5 6 3.3203 -1.5376 -0.7313 6 6 3.4916 -1.1945 0.7630 7 1 4.1894 -0.3666 0.8888 8 7 3.9523 -2.3718 1.5112 9 6 5.4196 -2.4289 1.5514 10 1 5.8212 -1.4172 1.6086 11 6 5.9305 -3.1024 0.3038 12 1 5.3648 -3.9040 -0.1474 13 6 7.1202 -2.6950 -0.2616 14 7 7.8496 -1.7755 0.3320 15 14 7.6961 -3.4489 -1.8708 16 1 6.6877 -3.1870 -2.9290 17 1 8.9941 -2.8445 -2.2641 18 1 7.8638 -4.9143 -1.6987 19 6 5.8588 -3.2129 2.7611 20 6 5.2373 -4.4075 3.0737 21 6 5.6362 -5.1237 4.1867 22 6 6.6642 -4.6509 4.9809 23 6 7.2895 -3.4593 4.6651 24 6 6.8870 -2.7404 3.5552 25 6 2.0716 -0.7813 1.2232 26 1 -0.3634 0.4738 0.9118 27 1 -0.3633 0.5528 -0.8664 28 1 -0.3633 -1.0266 -0.0457 29 1 1.3222 -1.4833 -1.5737 30 1 2.3429 -0.0852 -2.0129 31 1 4.1965 -1.2127 -1.2922 32 1 3.1750 -2.6109 -0.8533 33 1 3.5679 -3.2201 1.1230 34 1 8.6867 -1.4893 -0.0657 35 1 4.4373 -4.7791 2.4506 36 1 5.1479 -6.0549 4.4332 37 1 6.9789 -5.2128 5.8479 38 1 8.0929 -3.0901 5.2854 39 1 7.3759 -1.8094 3.3083 40 1 1.4589 -1.6606 1.4224 41 1 2.1221 -0.1373 2.1011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253262058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:39 Heat of formation + Delta-G solvation = -11.900326 kcal Electronic energy + Delta-G solvation = -19555.504747 eV Core-core repulsion = 16819.197133 eV Total energy + Delta-G solvation = -2736.307613 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.13590 -39.29933 -36.40596 -34.11834 -32.22868 -31.47771 -30.52946 -29.08411 -27.47327 -25.36091 -24.20135 -23.08705 -21.51732 -21.18247 -20.48181 -18.61208 -17.52530 -16.95908 -16.53325 -16.09255 -15.72623 -15.35124 -15.03989 -14.45123 -14.19191 -14.08354 -13.89310 -13.72249 -13.50555 -13.31336 -13.15216 -12.83321 -12.80579 -12.52882 -12.16590 -11.93358 -11.85995 -11.66074 -11.54309 -11.47047 -11.37135 -11.25875 -11.13828 -10.56498 -9.52714 -9.27924 -8.96465 -8.09119 -6.27078 0.80008 0.87219 1.35387 1.36085 1.42356 2.36551 3.09832 3.29084 3.60228 3.84564 3.92556 4.16433 4.29542 4.35197 4.45350 4.48872 4.56725 4.68166 4.73022 4.77682 4.81564 4.90996 4.94436 5.02708 5.07402 5.12609 5.22399 5.23299 5.25716 5.39562 5.43178 5.47602 5.50478 5.54395 5.65613 5.67332 5.84340 5.93232 6.04632 6.25218 6.39265 6.49725 6.90748 6.98042 7.40988 8.88591 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.007731 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.191143 B = 3620.936752 C = 5056.707483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.133 4.133 6 C 0.095 3.905 7 H 0.041 0.959 8 N -0.675 5.675 9 C 0.241 3.759 10 H 0.028 0.972 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.027 3.973 14 N -0.910 5.910 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.037 4.037 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.132 4.132 24 C -0.139 4.139 25 C -0.097 4.097 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.054 0.946 33 H 0.330 0.670 34 H 0.261 0.739 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 -0.545 2.461 10.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.172 4.172 6 C -0.016 4.016 7 H 0.059 0.941 8 N -0.303 5.303 9 C 0.132 3.868 10 H 0.046 0.954 11 C -0.570 4.570 12 H 0.070 0.930 13 C -0.174 4.174 14 N -0.549 5.549 15 Si 0.767 3.233 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.038 4.038 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.135 4.135 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.147 0.853 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.971 -0.124 3.063 10.432 hybrid contribution 1.387 -0.379 -2.048 2.502 sum -8.585 -0.503 1.015 8.659 Atomic orbital electron populations 1.21734 0.93265 1.02101 1.02099 1.21943 0.96655 0.98636 0.94147 0.91303 1.22168 0.96420 0.98757 0.97685 1.22635 0.97380 0.99747 0.97434 1.22234 0.95912 0.92607 0.90837 0.94054 1.60925 1.09353 1.04743 1.55249 1.18105 0.84385 0.94663 0.89628 0.95364 1.21758 1.06691 1.19091 1.09489 0.92959 1.25597 0.96805 0.95245 0.99802 1.70024 1.13724 1.31130 1.39981 0.85883 0.77570 0.78810 0.81067 1.19596 1.21219 1.20012 1.20469 0.94001 0.95419 0.93959 1.20941 1.00482 0.94983 0.97926 1.21350 0.97915 1.00186 0.95169 1.21234 0.97682 0.96654 1.01128 1.21261 1.00454 0.96131 0.97108 1.21024 0.98317 1.00451 0.95997 1.22480 0.94287 0.99580 0.97148 0.92084 0.91937 0.92415 0.90869 0.92208 0.94896 0.92686 0.85252 0.92990 0.86883 0.84180 0.83893 0.85282 0.89012 0.90912 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.14 71.98 0.66 -1.98 16 2 C -0.09 -2.41 3.45 -9.71 -0.03 -2.45 16 3 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 4 C -0.11 -3.13 6.38 31.32 0.20 -2.93 16 5 C -0.13 -4.83 5.73 31.32 0.18 -4.65 16 6 C 0.09 3.64 3.17 45.99 0.15 3.79 16 7 H 0.04 1.83 7.44 -2.39 -0.02 1.81 16 8 N -0.67 -28.21 5.71 -471.67 -2.69 -30.90 16 9 C 0.24 11.89 2.26 43.42 0.10 11.99 16 10 H 0.03 1.62 6.48 -2.39 -0.02 1.60 16 11 C -0.53 -27.93 7.49 25.60 0.19 -27.74 16 12 H 0.05 2.73 7.75 -2.91 -0.02 2.70 16 13 C 0.03 1.44 5.46 84.65 0.46 1.90 16 14 N -0.91 -52.08 12.84 21.45 0.28 -51.81 16 15 Si 0.94 43.48 29.54 68.60 2.03 45.51 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C -0.04 -1.75 4.93 -19.86 -0.10 -1.84 16 20 C -0.12 -5.10 9.28 22.27 0.21 -4.89 16 21 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 22 C -0.15 -4.94 10.05 22.27 0.22 -4.72 16 23 C -0.13 -4.96 10.05 22.27 0.22 -4.74 16 24 C -0.14 -6.39 9.67 22.27 0.22 -6.17 16 25 C -0.10 -2.90 6.00 31.89 0.19 -2.71 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.06 16 28 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 29 H 0.07 1.81 7.80 -2.39 -0.02 1.79 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 2.03 7.52 -2.39 -0.02 2.02 16 33 H 0.33 13.28 7.19 -89.69 -0.64 12.64 16 34 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 35 H 0.11 4.38 7.43 -2.91 -0.02 4.36 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.09 4.57 8.00 -2.91 -0.02 4.55 16 40 H 0.07 2.09 8.06 -2.38 -0.02 2.07 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -59.03 329.59 3.04 -55.99 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.34 Total: 32.55 kcal Atomic # 6 Polarization: -54.43 SS G_CDS: 3.09 Total: -51.34 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -2.42 Total: -82.71 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -59.03 3.04 -55.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253262058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.092 kcal (2) G-P(sol) polarization free energy of solvation -59.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds