Wall clock time and date at job start Mon Mar 30 2020 07:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36054 * 116.99755 * 2 1 4 4 C 1.38761 * 119.91959 * 359.97298 * 3 2 1 5 5 C 1.38785 * 120.55882 * 180.02562 * 4 3 2 6 6 Cl 1.73602 * 119.80537 * 179.97438 * 5 4 3 7 7 C 1.37863 * 120.38452 * 359.72233 * 5 4 3 8 8 F 1.35099 * 120.08544 * 180.27725 * 7 5 4 9 9 C 1.40998 * 119.82341 * 0.55766 * 7 5 4 10 10 C 1.41116 * 120.27199 * 179.72161 * 9 7 5 11 11 H 1.08000 * 120.00311 * 143.81017 * 10 9 7 12 12 C 1.39906 * 119.99744 * 323.80973 * 10 9 7 13 13 N 1.30898 * 120.00011 * 320.91163 * 12 10 9 14 14 Si 1.86796 * 120.00013 * 140.63943 * 12 10 9 15 15 H 1.48496 * 109.47350 * 180.27858 * 14 12 10 16 16 H 1.48506 * 109.47093 * 300.27407 * 14 12 10 17 17 H 1.48501 * 109.47468 * 60.27254 * 14 12 10 18 18 C 1.38696 * 119.91394 * 180.02562 * 3 2 1 19 19 O 1.35780 * 120.19764 * 359.97438 * 18 3 2 20 20 C 1.42902 * 117.00089 * 269.97930 * 19 18 3 21 21 H 1.09002 * 109.47268 * 300.00225 * 1 2 3 22 22 H 1.09002 * 109.47099 * 60.00497 * 1 2 3 23 23 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 24 24 H 1.08002 * 119.71841 * 0.02562 * 4 3 2 25 25 H 0.96994 * 120.00108 * 353.94881 * 13 12 10 26 26 H 1.08995 * 109.46913 * 59.99946 * 20 19 18 27 27 H 1.09003 * 109.46942 * 179.97438 * 20 19 18 28 28 H 1.09002 * 109.46802 * 299.99802 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2123 0.0000 4 6 1.2892 2.3749 -0.0006 5 6 1.9054 3.6185 -0.0011 6 17 0.9387 5.0605 -0.0025 7 6 3.2806 3.7153 0.0047 8 9 3.8741 4.9290 0.0098 9 6 4.0660 2.5444 -0.0007 10 6 5.4744 2.6325 -0.0008 11 1 6.0607 1.9104 0.5481 12 6 6.1112 3.6552 -0.7120 13 7 5.6525 4.0229 -1.8815 14 14 7.6116 4.5013 0.0109 15 1 8.0918 5.5458 -0.9291 16 1 7.2490 5.1302 1.3064 17 1 8.6866 3.5006 0.2302 18 6 3.4318 1.2828 -0.0005 19 8 4.1736 0.1456 -0.0005 20 6 4.5289 -0.3973 1.2727 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.2110 2.3116 -0.0006 25 1 4.9267 3.5297 -2.2947 26 1 3.6238 -0.6379 1.8304 27 1 5.1187 -1.3027 1.1298 28 1 5.1147 0.3345 1.8290 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258388370.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:07 Heat of formation + Delta-G solvation = -131.590076 kcal Electronic energy + Delta-G solvation = -17791.879123 eV Core-core repulsion = 14555.103367 eV Total energy + Delta-G solvation = -3236.775756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.31698 -41.03894 -38.91476 -37.99904 -37.00600 -35.53605 -31.49331 -30.41596 -28.08726 -27.89432 -26.56668 -23.08392 -23.00775 -20.36634 -18.78907 -18.36259 -18.15451 -16.97913 -16.72538 -16.17029 -15.98752 -15.77911 -15.76167 -15.32488 -15.14897 -14.40536 -14.03043 -13.62688 -13.56232 -13.19390 -12.93758 -12.70003 -12.51132 -12.25686 -11.98695 -11.97312 -11.63083 -11.31014 -10.87187 -10.60514 -9.76542 -9.38155 -8.86997 -6.63344 0.24902 0.56176 1.09242 1.46804 1.55714 1.77464 2.22018 2.36072 2.46491 2.84011 3.25673 3.74219 4.22234 4.30355 4.41676 4.53030 4.54118 4.58786 4.68489 4.71712 4.81640 5.00213 5.13767 5.41402 5.48285 5.68495 5.85049 6.27574 6.43392 6.55103 7.02588 7.79451 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.018168 B = 0.010447 C = 0.007075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.760299 B = 2679.499868 C = 3956.461597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.325 6.325 3 C 0.150 3.850 4 C -0.291 4.291 5 C 0.003 3.997 6 Cl -0.069 7.069 7 C -0.049 4.049 8 F -0.148 7.148 9 C 0.063 3.937 10 C -0.524 4.524 11 H 0.090 0.910 12 C 0.024 3.976 13 N -0.767 5.767 14 Si 1.102 2.898 15 H -0.268 1.268 16 H -0.266 1.266 17 H -0.248 1.248 18 C -0.054 4.054 19 O -0.328 6.328 20 C 0.032 3.968 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.124 0.876 24 H 0.154 0.846 25 H 0.281 0.719 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.442 -3.780 4.429 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.103 3.897 4 C -0.312 4.312 5 C -0.025 4.025 6 Cl -0.040 7.040 7 C -0.070 4.070 8 F -0.127 7.127 9 C 0.059 3.941 10 C -0.549 4.549 11 H 0.108 0.892 12 C -0.199 4.199 13 N -0.385 5.385 14 Si 0.918 3.082 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.172 1.172 18 C -0.100 4.100 19 O -0.245 6.245 20 C -0.062 4.062 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.142 0.858 24 H 0.171 0.829 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.330 -2.698 3.930 6.439 hybrid contribution -1.575 -0.622 0.314 1.722 sum -5.905 -3.320 4.244 7.994 Atomic orbital electron populations 1.23332 0.76942 1.05362 1.02003 1.86112 1.23138 1.25908 1.88707 1.19010 0.90716 0.84536 0.95427 1.20225 1.00036 0.88397 1.22496 1.20528 0.88862 0.88494 1.04614 1.98287 1.70866 1.37827 1.96992 1.17458 0.88845 0.80791 1.19928 1.91325 1.84459 1.41788 1.95163 1.17733 0.94401 0.89062 0.92950 1.20396 0.91201 1.13789 1.29539 0.89197 1.28367 1.05202 0.93635 0.92684 1.70602 1.19957 1.35505 1.12434 0.83234 0.71563 0.76840 0.76564 1.19284 1.19058 1.17151 1.18017 0.86205 0.85623 1.20151 1.85959 1.71112 1.38142 1.29271 1.23030 0.99301 0.98431 0.85476 0.91942 0.92309 0.85803 0.82893 0.90791 0.94159 0.87495 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 15 2 O -0.32 -12.18 10.27 -79.99 -0.82 -13.00 15 3 C 0.15 6.52 6.69 22.50 0.15 6.67 15 4 C -0.29 -11.89 8.82 22.53 0.20 -11.69 15 5 C 0.00 0.13 6.31 22.31 0.14 0.27 15 6 Cl -0.07 -2.64 28.58 -2.72 -0.08 -2.72 15 7 C -0.05 -2.53 6.78 22.86 0.15 -2.38 15 8 F -0.15 -7.91 14.55 44.97 0.65 -7.26 15 9 C 0.06 3.32 5.04 -21.17 -0.11 3.21 15 10 C -0.52 -27.59 8.29 23.38 0.19 -27.40 15 11 H 0.09 4.62 7.32 -2.91 -0.02 4.60 15 12 C 0.02 1.22 3.79 85.24 0.32 1.54 15 13 N -0.77 -41.15 12.68 21.82 0.28 -40.88 15 14 Si 1.10 43.04 30.06 68.60 2.06 45.11 15 15 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 16 H -0.27 -10.14 7.11 99.48 0.71 -9.44 15 17 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 18 C -0.05 -2.67 5.77 23.11 0.13 -2.54 15 19 O -0.33 -15.51 9.61 -76.90 -0.74 -16.24 15 20 C 0.03 1.19 11.03 113.37 1.25 2.44 15 21 H 0.06 1.42 7.65 -2.39 -0.02 1.40 15 22 H 0.06 1.39 7.65 -2.39 -0.02 1.38 15 23 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.15 5.14 6.26 -2.91 -0.02 5.12 15 25 H 0.28 15.80 8.15 -92.71 -0.76 15.05 15 26 H 0.04 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.11 3.20 8.14 -2.39 -0.02 3.18 15 28 H 0.03 1.21 7.56 -2.39 -0.02 1.19 15 Total: -1.00 -60.81 268.42 6.12 -54.69 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 1.21 Total: 8.62 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 3.55 Total: -28.32 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.28 Total: -40.88 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -1.56 Total: -29.25 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.65 Total: -7.26 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.06 Total: 45.11 kcal Atomic # 17 Polarization: -2.64 SS G_CDS: -0.08 Total: -2.72 kcal Total: -60.81 6.12 -54.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258388370.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.904 kcal (2) G-P(sol) polarization free energy of solvation -60.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds