Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47021 * 2 1 4 4 C 1.50694 * 109.47334 * 120.00329 * 2 1 3 5 5 H 1.07999 * 120.00529 * 84.92897 * 4 2 1 6 6 C 1.37886 * 120.00044 * 264.93266 * 4 2 1 7 7 N 1.31512 * 120.00085 * 179.50034 * 6 4 2 8 8 Si 1.86798 * 119.99825 * 359.49434 * 6 4 2 9 9 H 1.48498 * 109.47335 * 269.05836 * 8 6 4 10 10 H 1.48505 * 109.46922 * 29.05911 * 8 6 4 11 11 H 1.48502 * 109.47020 * 149.05518 * 8 6 4 12 12 C 1.50700 * 109.47058 * 240.00310 * 2 1 3 13 13 S 1.75882 * 125.20154 * 299.69557 * 12 2 1 14 14 C 1.75876 * 90.98142 * 179.97438 * 13 12 2 15 15 C 1.33392 * 109.60533 * 0.29287 * 14 13 12 16 16 C 1.33428 * 125.20441 * 119.99687 * 12 2 1 17 17 Br 1.89101 * 122.54748 * 359.94388 * 16 12 2 18 18 H 1.09005 * 109.46630 * 294.88130 * 1 2 3 19 19 H 1.09004 * 109.46849 * 54.87686 * 1 2 3 20 20 H 1.08995 * 109.47247 * 174.87898 * 1 2 3 21 21 H 0.96999 * 120.00145 * 179.97438 * 7 6 4 22 22 H 1.07997 * 125.19754 * 180.02562 * 14 13 12 23 23 H 1.08001 * 122.54809 * 179.79333 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.1345 -1.7856 1.2293 6 6 2.3616 0.0122 2.3576 7 7 2.7907 -0.6087 3.4346 8 14 2.1984 1.8730 2.3548 9 1 3.4803 2.4817 1.9173 10 1 1.1158 2.2735 1.4205 11 1 1.8692 2.3431 3.7245 12 6 2.0323 -0.7103 -1.2305 13 16 1.6990 -2.3881 -1.6397 14 6 2.6451 -2.2476 -3.1157 15 6 3.1408 -1.0131 -3.2138 16 6 2.8026 -0.1644 -2.1733 17 35 3.3877 1.6322 -2.0947 18 1 -0.3633 0.4324 0.9324 19 1 -0.3633 0.5913 -0.8406 20 1 -0.3633 -1.0235 -0.0917 21 1 3.0227 -0.1003 4.2275 22 1 2.8042 -3.0410 -3.8310 23 1 3.7588 -0.6993 -4.0420 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259542823.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = 22.832848 kcal Electronic energy + Delta-G solvation = -10384.617294 eV Core-core repulsion = 8370.490214 eV Total energy + Delta-G solvation = -2014.127080 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.65138 -34.32715 -31.68530 -30.45762 -27.56552 -25.27184 -23.35066 -20.60458 -18.67621 -16.91996 -16.35488 -15.09151 -14.28174 -13.33059 -13.02468 -12.75531 -12.43219 -12.14248 -11.67026 -11.21755 -11.04676 -10.73690 -10.52982 -10.23326 -10.01916 -9.82584 -9.67801 -9.12319 -8.63823 -7.98846 -7.82933 -6.17312 -4.18773 1.50483 1.75933 2.32347 2.94938 2.99906 3.27101 3.34448 3.37000 4.35426 5.15431 5.37295 5.54167 5.97829 6.16870 6.30254 6.43190 6.53150 6.70107 6.73063 6.98602 7.23778 7.57746 8.36085 8.84607 9.43027 10.94823 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.013136 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.977911 B = 2131.067128 C = 3004.505171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.055 3.945 3 H 0.064 0.936 4 C -0.512 4.512 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.891 5.891 8 Si 0.863 3.137 9 H -0.270 1.270 10 H -0.258 1.258 11 H -0.286 1.286 12 C -0.061 4.061 13 S 0.137 5.863 14 C -0.250 4.250 15 C -0.105 4.105 16 C -0.153 4.153 17 Br -0.050 7.050 18 H 0.055 0.945 19 H 0.028 0.972 20 H 0.046 0.954 21 H 0.266 0.734 22 H 0.161 0.839 23 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 1.868 -12.475 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 H 0.082 0.918 4 C -0.550 4.550 5 H 0.097 0.903 6 C -0.123 4.123 7 N -0.528 5.528 8 Si 0.690 3.310 9 H -0.195 1.195 10 H -0.182 1.182 11 H -0.212 1.212 12 C -0.182 4.182 13 S 0.399 5.601 14 C -0.386 4.386 15 C -0.136 4.136 16 C -0.242 4.242 17 Br 0.033 6.967 18 H 0.074 0.926 19 H 0.047 0.953 20 H 0.065 0.935 21 H 0.076 0.924 22 H 0.178 0.822 23 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.106 1.364 -11.595 11.728 hybrid contribution 0.824 1.620 -0.571 1.906 sum -0.282 2.985 -12.167 12.531 Atomic orbital electron populations 1.22080 0.97361 1.00271 0.99871 1.18251 0.92958 0.96412 0.88922 0.91804 1.20865 1.44651 0.95392 0.94063 0.90253 1.24952 0.93840 0.98242 0.95252 1.69874 1.43662 1.36073 1.03174 0.87019 0.79885 0.86481 0.77647 1.19521 1.18216 1.21173 1.25290 0.97984 0.96314 0.98569 1.84287 1.50395 1.09622 1.15755 1.25415 1.08704 1.00995 1.03456 1.19774 1.02177 0.92708 0.98987 1.20492 1.09765 0.93366 1.00613 1.96519 1.89218 1.12171 1.98805 0.92555 0.95287 0.93471 0.92373 0.82164 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.11 37.16 0.34 -2.54 14 2 C 0.06 1.29 2.16 -92.93 -0.20 1.09 14 3 H 0.06 1.52 3.88 -51.93 -0.20 1.32 14 4 C -0.51 -13.93 8.77 -34.44 -0.30 -14.23 14 5 H 0.08 2.33 7.93 -52.49 -0.42 1.91 14 6 C 0.08 2.26 5.47 -17.82 -0.10 2.16 14 7 N -0.89 -26.59 13.96 55.43 0.77 -25.82 14 8 Si 0.86 21.10 26.87 -169.99 -4.57 16.53 14 9 H -0.27 -6.55 7.11 56.52 0.40 -6.15 14 10 H -0.26 -5.97 6.72 56.52 0.38 -5.59 14 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 14 12 C -0.06 -1.28 5.08 -35.99 -0.18 -1.46 14 13 S 0.14 2.47 22.77 -107.50 -2.45 0.02 14 14 C -0.25 -3.85 11.23 29.04 0.33 -3.52 14 15 C -0.10 -1.72 10.04 -41.19 -0.41 -2.14 14 16 C -0.15 -2.96 6.17 -41.18 -0.25 -3.21 14 17 Br -0.05 -0.92 32.38 -68.01 -2.20 -3.12 14 18 H 0.06 1.19 7.97 -51.93 -0.41 0.78 14 19 H 0.03 0.54 8.14 -51.93 -0.42 0.11 14 20 H 0.05 0.93 7.84 -51.93 -0.41 0.53 14 21 H 0.27 7.46 8.31 -40.82 -0.34 7.12 14 22 H 0.16 1.92 8.06 -52.49 -0.42 1.50 14 23 H 0.14 1.89 8.06 -52.49 -0.42 1.47 14 LS Contribution 235.13 15.07 3.54 3.54 Total: -1.00 -28.68 235.13 -7.55 -36.23 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -1.86 Total: -3.53 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: -0.79 Total: -23.85 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.57 Total: 16.53 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.45 Total: 0.02 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -2.20 Total: -3.12 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -28.68 -7.55 -36.23 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542823.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.062 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds