Wall clock time and date at job start Mon Mar 30 2020 06:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47021 * 2 1 4 4 C 1.50694 * 109.47334 * 120.00329 * 2 1 3 5 5 H 1.07999 * 120.00529 * 84.92897 * 4 2 1 6 6 C 1.37886 * 120.00044 * 264.93266 * 4 2 1 7 7 N 1.31512 * 120.00085 * 179.50034 * 6 4 2 8 8 Si 1.86798 * 119.99825 * 359.49434 * 6 4 2 9 9 H 1.48498 * 109.47335 * 269.05836 * 8 6 4 10 10 H 1.48505 * 109.46922 * 29.05911 * 8 6 4 11 11 H 1.48502 * 109.47020 * 149.05518 * 8 6 4 12 12 C 1.50700 * 109.47058 * 240.00310 * 2 1 3 13 13 S 1.75882 * 125.20154 * 299.69557 * 12 2 1 14 14 C 1.75876 * 90.98142 * 179.97438 * 13 12 2 15 15 C 1.33392 * 109.60533 * 0.29287 * 14 13 12 16 16 C 1.33428 * 125.20441 * 119.99687 * 12 2 1 17 17 Br 1.89101 * 122.54748 * 359.94388 * 16 12 2 18 18 H 1.09005 * 109.46630 * 294.88130 * 1 2 3 19 19 H 1.09004 * 109.46849 * 54.87686 * 1 2 3 20 20 H 1.08995 * 109.47247 * 174.87898 * 1 2 3 21 21 H 0.96999 * 120.00145 * 179.97438 * 7 6 4 22 22 H 1.07997 * 125.19754 * 180.02562 * 14 13 12 23 23 H 1.08001 * 122.54809 * 179.79333 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.1345 -1.7856 1.2293 6 6 2.3616 0.0122 2.3576 7 7 2.7907 -0.6087 3.4346 8 14 2.1984 1.8730 2.3548 9 1 3.4803 2.4817 1.9173 10 1 1.1158 2.2735 1.4205 11 1 1.8692 2.3431 3.7245 12 6 2.0323 -0.7103 -1.2305 13 16 1.6990 -2.3881 -1.6397 14 6 2.6451 -2.2476 -3.1157 15 6 3.1408 -1.0131 -3.2138 16 6 2.8026 -0.1644 -2.1733 17 35 3.3877 1.6322 -2.0947 18 1 -0.3633 0.4324 0.9324 19 1 -0.3633 0.5913 -0.8406 20 1 -0.3633 -1.0235 -0.0917 21 1 3.0227 -0.1003 4.2275 22 1 2.8042 -3.0410 -3.8310 23 1 3.7588 -0.6993 -4.0420 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259542823.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:24 Heat of formation + Delta-G solvation = 6.445747 kcal Electronic energy + Delta-G solvation = -10385.327892 eV Core-core repulsion = 8370.490214 eV Total energy + Delta-G solvation = -2014.837678 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.09246 -36.11058 -33.65810 -31.91518 -29.04966 -27.24588 -24.78455 -22.30760 -20.19804 -18.83328 -17.92031 -16.58573 -16.12000 -14.94185 -14.64721 -14.53473 -14.05135 -13.69423 -13.14613 -12.99674 -12.76109 -12.57981 -12.08827 -11.80095 -11.63412 -11.62048 -11.26332 -10.92796 -10.71977 -9.41410 -9.26121 -8.31337 -6.35764 0.08691 0.31844 1.00364 1.32202 1.35596 1.43926 1.51541 1.63350 2.32646 3.06418 3.96939 4.27118 4.51884 4.58324 4.80723 4.89470 4.98936 5.16993 5.21581 5.37392 5.51900 5.62900 6.23860 6.69308 7.29191 8.84542 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.021853 B = 0.013136 C = 0.009317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.977911 B = 2131.067128 C = 3004.505171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.055 3.945 3 H 0.059 0.941 4 C -0.508 4.508 5 H 0.044 0.956 6 C 0.026 3.974 7 N -0.941 5.941 8 Si 0.915 3.085 9 H -0.267 1.267 10 H -0.237 1.237 11 H -0.284 1.284 12 C -0.110 4.110 13 S 0.127 5.873 14 C -0.217 4.217 15 C -0.119 4.119 16 C -0.148 4.148 17 Br -0.046 7.046 18 H 0.048 0.952 19 H 0.052 0.948 20 H 0.050 0.950 21 H 0.267 0.733 22 H 0.203 0.797 23 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.678 2.373 -14.780 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.035 3.965 3 H 0.077 0.923 4 C -0.546 4.546 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.581 5.581 8 Si 0.738 3.262 9 H -0.192 1.192 10 H -0.160 1.160 11 H -0.210 1.210 12 C -0.230 4.230 13 S 0.389 5.611 14 C -0.353 4.353 15 C -0.150 4.150 16 C -0.239 4.239 17 Br 0.037 6.963 18 H 0.067 0.933 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.220 0.780 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.216 1.873 -13.923 14.100 hybrid contribution 0.874 1.343 0.024 1.603 sum -0.342 3.216 -13.899 14.270 Atomic orbital electron populations 1.21979 0.95770 1.01017 1.00468 1.18091 0.94191 0.95861 0.88367 0.92303 1.21088 1.43467 0.94134 0.95917 0.93762 1.25707 0.93976 1.02631 0.94924 1.70007 1.46159 1.37840 1.04079 0.86187 0.80554 0.81318 0.78126 1.19196 1.16010 1.20956 1.25046 1.00747 0.98049 0.99155 1.84295 1.51183 1.08091 1.17536 1.25897 1.05770 1.01584 1.02037 1.20047 1.03094 0.92598 0.99237 1.20872 1.08304 0.93927 1.00788 1.96516 1.89030 1.11963 1.98804 0.93331 0.92868 0.93099 0.92402 0.78012 0.81635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 9.11 71.98 0.66 -4.80 14 2 C 0.06 2.54 2.16 -12.29 -0.03 2.51 14 3 H 0.06 2.72 3.88 -2.39 -0.01 2.71 14 4 C -0.51 -28.10 8.77 25.60 0.22 -27.88 14 5 H 0.04 2.69 7.93 -2.91 -0.02 2.67 14 6 C 0.03 1.48 5.47 84.66 0.46 1.94 14 7 N -0.94 -57.83 13.96 21.45 0.30 -57.53 14 8 Si 0.91 43.37 26.87 68.60 1.84 45.21 14 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 14 10 H -0.24 -10.32 6.72 99.48 0.67 -9.65 14 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 14 12 C -0.11 -4.46 5.08 24.60 0.13 -4.33 14 13 S 0.13 4.35 22.77 -56.49 -1.29 3.06 14 14 C -0.22 -5.83 11.23 66.72 0.75 -5.08 14 15 C -0.12 -3.49 10.04 21.23 0.21 -3.28 14 16 C -0.15 -5.39 6.17 21.24 0.13 -5.26 14 17 Br -0.05 -1.60 32.38 -20.37 -0.66 -2.26 14 18 H 0.05 2.00 7.97 -2.38 -0.02 1.98 14 19 H 0.05 1.87 8.14 -2.39 -0.02 1.86 14 20 H 0.05 1.98 7.84 -2.39 -0.02 1.96 14 21 H 0.27 15.40 8.31 -92.71 -0.77 14.63 14 22 H 0.20 3.69 8.06 -2.91 -0.02 3.67 14 23 H 0.17 3.85 8.06 -2.91 -0.02 3.83 14 Total: -1.00 -62.19 235.13 3.91 -58.28 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: 1.18 Total: -0.58 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 2.53 Total: -46.18 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.30 Total: -57.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.84 Total: 45.21 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.29 Total: 3.06 kcal Atomic # 35 Polarization: -1.60 SS G_CDS: -0.66 Total: -2.26 kcal Total: -62.19 3.91 -58.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542823.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.724 kcal (2) G-P(sol) polarization free energy of solvation -62.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds