Wall clock time and date at job start Mon Mar 30 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47046 * 2 1 4 4 C 1.50704 * 109.47240 * 119.99595 * 2 1 3 5 5 H 1.07993 * 120.00066 * 119.99744 * 4 2 1 6 6 C 1.37875 * 119.99891 * 300.00323 * 4 2 1 7 7 N 1.31512 * 119.99935 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00404 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46974 * 89.99938 * 8 6 4 10 10 H 1.48497 * 109.47127 * 210.00214 * 8 6 4 11 11 H 1.48502 * 109.46664 * 330.00133 * 8 6 4 12 12 C 1.50693 * 109.47519 * 239.99637 * 2 1 3 13 13 C 1.33365 * 122.53815 * 300.02890 * 12 2 1 14 14 S 1.75879 * 109.61534 * 179.97438 * 13 12 2 15 15 C 1.75879 * 90.98031 * 359.97438 * 14 13 12 16 16 Br 1.89101 * 125.20944 * 180.02562 * 15 14 13 17 17 C 1.33479 * 109.58360 * 359.97438 * 15 14 13 18 18 H 1.09000 * 109.47134 * 60.00230 * 1 2 3 19 19 H 1.09004 * 109.47309 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47375 * 300.00314 * 1 2 3 21 21 H 0.97008 * 120.00357 * 179.97438 * 7 6 4 22 22 H 1.07998 * 125.18736 * 0.25905 * 13 12 2 23 23 H 1.08004 * 122.55083 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8490 2.1774 1.4922 12 6 2.0324 -0.7104 -1.2303 13 6 1.7410 -1.9854 -1.4917 14 16 2.4975 -2.4656 -3.0051 15 6 3.1872 -0.8600 -3.2048 16 35 4.2684 -0.3106 -4.6557 17 6 2.8296 -0.0884 -2.1761 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.9031 -0.5277 4.4376 22 1 1.1298 -2.6239 -0.8712 23 1 3.1392 0.9426 -2.0877 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259721596.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:32 Heat of formation + Delta-G solvation = 30.050862 kcal Electronic energy + Delta-G solvation = -10216.257812 eV Core-core repulsion = 8202.443729 eV Total energy + Delta-G solvation = -2013.814083 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.09733 -33.88491 -31.80289 -30.66236 -27.64618 -25.16560 -23.85864 -20.59460 -18.27533 -17.16499 -16.37242 -15.14101 -14.32658 -13.26312 -13.09988 -12.84127 -12.60635 -12.27949 -11.91713 -11.38882 -11.20923 -10.89256 -10.48559 -10.25822 -10.09852 -9.97894 -9.44866 -9.18321 -8.62746 -8.26147 -7.80737 -6.12825 -4.13256 1.24633 1.39166 2.10896 2.37400 3.21733 3.25031 3.33938 3.36360 4.35344 5.19440 5.64821 5.70767 5.90768 6.20566 6.29404 6.45960 6.56785 6.76432 6.92922 6.96966 7.44244 7.65519 8.44778 8.91022 9.47738 10.99889 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.043910 B = 0.006201 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.508719 B = 4513.954449 C = 4714.134557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.037 0.963 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.888 3.112 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.266 1.266 12 C -0.059 4.059 13 C -0.180 4.180 14 S 0.098 5.902 15 C -0.214 4.214 16 Br -0.014 7.014 17 C -0.074 4.074 18 H 0.031 0.969 19 H 0.053 0.947 20 H 0.042 0.958 21 H 0.265 0.735 22 H 0.170 0.830 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 0.631 -15.756 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.038 3.962 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.206 1.206 10 H -0.225 1.225 11 H -0.191 1.191 12 C -0.071 4.071 13 C -0.316 4.316 14 S 0.360 5.640 15 C -0.409 4.409 16 Br 0.070 6.930 17 C -0.109 4.109 18 H 0.050 0.950 19 H 0.072 0.928 20 H 0.061 0.939 21 H 0.075 0.925 22 H 0.188 0.812 23 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.768 -0.540 -16.961 17.061 hybrid contribution -0.803 1.910 1.457 2.533 sum 0.965 1.370 -15.503 15.594 Atomic orbital electron populations 1.22172 0.98225 1.00956 0.98750 1.18080 0.91847 0.95873 0.90365 0.94462 1.20970 1.32299 1.13626 0.88004 0.90536 1.24996 0.95686 0.96627 0.95774 1.69886 1.45396 1.40278 0.97959 0.86847 0.80572 0.83765 0.77017 1.20555 1.22453 1.19085 1.19146 0.97100 0.93812 0.96995 1.25562 1.07200 0.99770 0.99091 1.83948 1.48649 1.10060 1.21389 1.25763 1.12222 1.01191 1.01764 1.96582 1.66014 1.90241 1.40193 1.20297 0.97525 1.01013 0.92023 0.94974 0.92760 0.93943 0.92538 0.81230 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.50 37.15 0.32 -2.67 14 2 C 0.06 1.35 2.14 -92.93 -0.20 1.15 14 3 H 0.04 0.85 7.09 -51.93 -0.37 0.49 14 4 C -0.51 -13.81 8.88 -34.44 -0.31 -14.12 14 5 H 0.08 2.26 7.88 -52.49 -0.41 1.85 14 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 14 7 N -0.90 -26.83 13.96 55.43 0.77 -26.06 14 8 Si 0.89 21.31 24.37 -169.99 -4.14 17.17 14 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 14 10 H -0.30 -7.19 7.11 56.52 0.40 -6.79 14 11 H -0.27 -6.08 6.53 56.52 0.37 -5.71 14 12 C -0.06 -1.18 4.62 -106.25 -0.49 -1.67 14 13 C -0.18 -3.30 10.04 29.03 0.29 -3.01 14 14 S 0.10 1.53 23.34 -107.50 -2.51 -0.98 14 15 C -0.21 -3.49 6.97 29.07 0.20 -3.29 14 16 Br -0.01 -0.19 34.07 -68.01 -2.32 -2.50 14 17 C -0.07 -1.32 9.85 -41.17 -0.41 -1.72 14 18 H 0.03 0.58 8.14 -51.93 -0.42 0.15 14 19 H 0.05 1.08 7.74 -51.93 -0.40 0.68 14 20 H 0.04 0.92 3.27 -51.93 -0.17 0.75 14 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 14 22 H 0.17 3.04 7.94 -52.49 -0.42 2.62 14 23 H 0.14 2.36 8.06 -52.48 -0.42 1.93 14 LS Contribution 231.13 15.07 3.48 3.48 Total: -1.00 -28.17 231.13 -7.20 -35.37 By element: Atomic # 1 Polarization: -1.25 SS G_CDS: -1.80 Total: -3.05 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: -0.69 Total: -23.43 kcal Atomic # 7 Polarization: -26.83 SS G_CDS: 0.77 Total: -26.06 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.17 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.51 Total: -0.98 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.32 Total: -2.50 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.17 -7.20 -35.37 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721596.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.420 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds