Wall clock time and date at job start Mon Mar 30 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47046 * 2 1 4 4 C 1.50704 * 109.47240 * 119.99595 * 2 1 3 5 5 H 1.07993 * 120.00066 * 119.99744 * 4 2 1 6 6 C 1.37875 * 119.99891 * 300.00323 * 4 2 1 7 7 N 1.31512 * 119.99935 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00404 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46974 * 89.99938 * 8 6 4 10 10 H 1.48497 * 109.47127 * 210.00214 * 8 6 4 11 11 H 1.48502 * 109.46664 * 330.00133 * 8 6 4 12 12 C 1.50693 * 109.47519 * 239.99637 * 2 1 3 13 13 C 1.33365 * 122.53815 * 300.02890 * 12 2 1 14 14 S 1.75879 * 109.61534 * 179.97438 * 13 12 2 15 15 C 1.75879 * 90.98031 * 359.97438 * 14 13 12 16 16 Br 1.89101 * 125.20944 * 180.02562 * 15 14 13 17 17 C 1.33479 * 109.58360 * 359.97438 * 15 14 13 18 18 H 1.09000 * 109.47134 * 60.00230 * 1 2 3 19 19 H 1.09004 * 109.47309 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47375 * 300.00314 * 1 2 3 21 21 H 0.97008 * 120.00357 * 179.97438 * 7 6 4 22 22 H 1.07998 * 125.18736 * 0.25905 * 13 12 2 23 23 H 1.08004 * 122.55083 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1372 -0.8594 3.5566 8 14 0.6257 1.2799 2.6541 9 1 -0.8022 0.8745 2.6993 10 1 0.9771 1.9955 3.9070 11 1 0.8490 2.1774 1.4922 12 6 2.0324 -0.7104 -1.2303 13 6 1.7410 -1.9854 -1.4917 14 16 2.4975 -2.4656 -3.0051 15 6 3.1872 -0.8600 -3.2048 16 35 4.2684 -0.3106 -4.6557 17 6 2.8296 -0.0884 -2.1761 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 1.9031 -0.5277 4.4376 22 1 1.1298 -2.6239 -0.8712 23 1 3.1392 0.9426 -2.0877 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259721596.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:32 Heat of formation + Delta-G solvation = 13.629062 kcal Electronic energy + Delta-G solvation = -10216.969915 eV Core-core repulsion = 8202.443729 eV Total energy + Delta-G solvation = -2014.526186 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 259.957 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.57164 -35.66796 -33.54276 -32.17384 -29.03609 -27.08780 -25.45073 -22.19785 -19.76789 -18.83449 -18.14500 -16.88963 -15.89845 -14.93857 -14.74743 -14.48608 -14.07548 -13.97026 -13.33201 -13.01537 -12.91997 -12.54577 -12.05834 -11.77205 -11.67718 -11.32493 -11.20315 -11.10712 -10.72100 -9.57485 -9.18783 -8.27398 -6.31778 -0.11788 0.11960 0.82248 0.99535 1.33891 1.39627 1.49823 1.77676 2.34578 3.08539 4.15521 4.27447 4.49295 4.68458 4.70529 4.84677 4.99501 5.13462 5.35431 5.40382 5.64683 5.82254 6.32227 6.74372 7.32877 8.88936 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.043910 B = 0.006201 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.508719 B = 4513.954449 C = 4714.134557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 H 0.037 0.963 4 C -0.509 4.509 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.266 1.266 10 H -0.302 1.302 11 H -0.244 1.244 12 C -0.081 4.081 13 C -0.197 4.197 14 S 0.156 5.844 15 C -0.218 4.218 16 Br 0.016 6.984 17 C -0.090 4.090 18 H 0.062 0.938 19 H 0.054 0.946 20 H 0.034 0.966 21 H 0.265 0.735 22 H 0.165 0.835 23 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 1.496 -17.801 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.038 3.962 3 H 0.055 0.945 4 C -0.547 4.547 5 H 0.053 0.947 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.192 1.192 10 H -0.230 1.230 11 H -0.168 1.168 12 C -0.093 4.093 13 C -0.333 4.333 14 S 0.418 5.582 15 C -0.414 4.414 16 Br 0.099 6.901 17 C -0.124 4.124 18 H 0.081 0.919 19 H 0.074 0.926 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.183 0.817 23 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.189 0.320 -19.043 19.083 hybrid contribution -0.514 1.522 1.972 2.544 sum 0.675 1.842 -17.071 17.183 Atomic orbital electron populations 1.22091 0.96537 1.01469 0.99736 1.17967 0.93249 0.95385 0.89628 0.94542 1.21220 1.30958 1.12364 0.90153 0.94712 1.25852 0.97294 0.99937 0.95361 1.70043 1.47723 1.42561 0.98611 0.85845 0.79124 0.80100 0.77330 1.19201 1.22996 1.16783 1.19018 0.98778 0.94531 0.96928 1.25668 1.07356 0.99553 1.00713 1.83726 1.46931 1.08926 1.18573 1.26046 1.11725 1.01442 1.02142 1.96616 1.65052 1.90097 1.38303 1.20279 0.98064 1.01772 0.92287 0.91931 0.92641 0.94777 0.92581 0.81704 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.50 71.98 0.61 -4.96 14 2 C 0.06 2.62 2.14 -12.29 -0.03 2.59 14 3 H 0.04 1.62 7.09 -2.38 -0.02 1.60 14 4 C -0.51 -28.06 8.88 25.60 0.23 -27.84 14 5 H 0.03 2.14 7.88 -2.91 -0.02 2.12 14 6 C 0.01 0.71 5.45 84.65 0.46 1.17 14 7 N -0.95 -58.49 13.96 21.45 0.30 -58.19 14 8 Si 0.95 43.65 24.37 68.60 1.67 45.32 14 9 H -0.27 -11.61 6.87 99.48 0.68 -10.93 14 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 14 11 H -0.24 -10.28 6.53 99.48 0.65 -9.63 14 12 C -0.08 -3.14 4.62 -20.92 -0.10 -3.24 14 13 C -0.20 -7.04 10.04 66.72 0.67 -6.37 14 14 S 0.16 4.53 23.34 -56.49 -1.32 3.21 14 15 C -0.22 -6.60 6.97 66.74 0.47 -6.14 14 16 Br 0.02 0.39 34.07 -20.37 -0.69 -0.30 14 17 C -0.09 -3.05 9.85 21.24 0.21 -2.84 14 18 H 0.06 2.08 8.14 -2.39 -0.02 2.06 14 19 H 0.05 2.13 7.74 -2.38 -0.02 2.12 14 20 H 0.03 1.39 3.27 -2.39 -0.01 1.38 14 21 H 0.27 15.36 8.31 -92.70 -0.77 14.59 14 22 H 0.17 5.93 7.94 -2.91 -0.02 5.90 14 23 H 0.15 4.75 8.06 -2.91 -0.02 4.72 14 Total: -1.00 -60.57 231.13 3.62 -56.96 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: 1.14 Total: 0.62 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 2.52 Total: -47.62 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.30 Total: -58.19 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.67 Total: 45.32 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.32 Total: 3.21 kcal Atomic # 35 Polarization: 0.39 SS G_CDS: -0.69 Total: -0.30 kcal Total: -60.57 3.62 -56.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259721596.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.585 kcal (2) G-P(sol) polarization free energy of solvation -60.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds