Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99899 * 2 1 4 4 C 1.50701 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.39684 * 126.32872 * 0.02562 * 4 3 2 6 6 C 1.39584 * 106.48128 * 179.97438 * 5 4 3 7 7 C 1.39709 * 126.18939 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00234 * 359.97438 * 7 6 5 9 9 C 1.40135 * 119.99824 * 180.02562 * 7 6 5 10 10 N 1.30833 * 119.99985 * 359.72664 * 9 7 6 11 11 Si 1.86795 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47273 * 59.99814 * 11 9 7 13 13 H 1.48495 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47290 * 300.00010 * 11 9 7 15 15 O 1.35112 * 107.61701 * 0.25999 * 6 5 4 16 16 C 1.34268 * 109.37972 * 359.56467 * 15 6 5 17 17 Br 1.89098 * 125.41391 * 180.17238 * 16 15 6 18 18 H 1.09004 * 109.47189 * 59.99791 * 1 2 3 19 19 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47464 * 299.99879 * 1 2 3 21 21 H 1.09007 * 109.47412 * 60.00051 * 3 2 1 22 22 H 1.09000 * 109.47149 * 299.99932 * 3 2 1 23 23 H 1.07993 * 126.75856 * 359.97438 * 5 4 3 24 24 H 0.97000 * 120.00270 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2486 -0.0006 0.0006 6 6 5.5948 0.3682 0.0007 7 6 6.6884 -0.5013 0.0013 8 1 6.5290 -1.5695 0.0021 9 6 7.9921 0.0126 0.0019 10 7 8.1852 1.3066 -0.0035 11 14 9.4542 -1.1499 0.0019 12 1 9.4064 -2.0055 -1.2109 13 1 10.7130 -0.3621 0.0032 14 1 9.4057 -2.0064 1.2141 15 8 5.6490 1.7182 0.0066 16 6 4.4013 2.2142 0.0006 17 35 3.9522 4.0511 0.0006 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6885 1.8465 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.8539 -1.0058 0.0006 24 1 9.0876 1.6623 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260026293.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = -46.333200 kcal Electronic energy + Delta-G solvation = -12128.721045 eV Core-core repulsion = 9668.841829 eV Total energy + Delta-G solvation = -2459.879216 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.41374 -37.33366 -33.78389 -32.09967 -30.57794 -28.90388 -26.89601 -25.27810 -23.78159 -19.93268 -19.34489 -17.20569 -15.73411 -15.46438 -15.42562 -14.76016 -14.22340 -14.05402 -13.19986 -12.30948 -12.16933 -11.58848 -11.36953 -11.33503 -11.06105 -10.71003 -10.62100 -10.22945 -10.07307 -9.54042 -9.47760 -9.42430 -8.10573 -7.22437 -6.93373 -4.54683 2.37362 2.84319 3.00195 3.03483 3.24563 3.81469 3.90737 4.22224 5.13095 5.33463 5.49562 5.53238 5.78120 5.83399 6.03262 6.03881 6.80463 6.95068 7.27247 7.37896 7.68981 7.88110 7.93562 8.44622 8.57217 9.06314 10.05019 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.008410 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.830703 B = 3328.453846 C = 4541.835637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.137 3.863 4 C -0.084 4.084 5 C -0.360 4.360 6 C 0.219 3.781 7 C -0.437 4.437 8 H 0.108 0.892 9 C 0.065 3.935 10 N -0.770 5.770 11 Si 0.926 3.074 12 H -0.261 1.261 13 H -0.276 1.276 14 H -0.261 1.261 15 O -0.140 6.140 16 C -0.162 4.162 17 Br -0.026 7.026 18 H 0.036 0.964 19 H 0.081 0.919 20 H 0.036 0.964 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.125 0.875 24 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 2.715 0.005 7.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.061 3.939 4 C -0.089 4.089 5 C -0.381 4.381 6 C 0.165 3.835 7 C -0.466 4.466 8 H 0.125 0.875 9 C -0.157 4.157 10 N -0.395 5.395 11 Si 0.750 3.250 12 H -0.185 1.185 13 H -0.200 1.200 14 H -0.186 1.186 15 O -0.038 6.038 16 C -0.288 4.288 17 Br 0.057 6.943 18 H 0.055 0.945 19 H 0.100 0.900 20 H 0.055 0.945 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.143 0.857 24 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.798 3.625 0.004 7.704 hybrid contribution 0.435 -0.545 0.004 0.697 sum -6.364 3.080 0.008 7.070 Atomic orbital electron populations 1.22687 0.82224 1.02195 0.99472 1.87964 1.18373 1.28058 1.95269 1.20621 0.90224 0.83796 0.99231 1.19180 0.92325 0.93092 1.04275 1.21089 0.91136 0.96753 1.29093 1.19711 0.93749 0.78953 0.91122 1.18777 0.88109 0.93988 1.45731 0.87456 1.26195 1.01277 0.95897 0.92301 1.69777 1.24835 1.12894 1.31993 0.86056 0.78622 0.80158 0.80206 1.18549 1.20050 1.18556 1.84476 1.24624 1.20823 1.73873 1.22147 0.85943 0.88091 1.32607 1.96370 1.90627 1.08600 1.98684 0.94513 0.90023 0.94522 0.93089 0.93082 0.85717 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 14 2 O -0.38 -7.29 10.10 -35.23 -0.36 -7.64 14 3 C 0.14 2.72 6.17 36.01 0.22 2.94 14 4 C -0.08 -2.06 6.10 -104.93 -0.64 -2.70 14 5 C -0.36 -9.48 10.28 -38.54 -0.40 -9.88 14 6 C 0.22 6.17 6.79 -38.53 -0.26 5.91 14 7 C -0.44 -11.65 9.32 -38.32 -0.36 -12.01 14 8 H 0.11 2.64 7.85 -52.49 -0.41 2.23 14 9 C 0.07 1.64 5.50 -17.27 -0.09 1.54 14 10 N -0.77 -20.46 12.01 55.56 0.67 -19.80 14 11 Si 0.93 18.28 29.56 -169.99 -5.03 13.26 14 12 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 13 H -0.28 -5.29 7.11 56.52 0.40 -4.89 14 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 14 15 O -0.14 -4.03 8.97 3.53 0.03 -3.99 14 16 C -0.16 -4.12 7.80 29.88 0.23 -3.88 14 17 Br -0.03 -0.52 33.77 -68.01 -2.30 -2.82 14 18 H 0.04 0.44 8.14 -51.93 -0.42 0.02 14 19 H 0.08 0.94 8.14 -51.93 -0.42 0.52 14 20 H 0.04 0.44 8.14 -51.93 -0.42 0.02 14 21 H 0.05 0.93 8.14 -51.92 -0.42 0.51 14 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 14 23 H 0.12 3.17 7.96 -52.49 -0.42 2.75 14 24 H 0.29 6.87 8.30 -40.82 -0.34 6.53 14 LS Contribution 243.52 15.07 3.67 3.67 Total: -1.00 -29.40 243.52 -5.57 -34.97 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -2.08 Total: -1.10 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.18 Total: -16.55 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.67 Total: -19.80 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.32 Total: -11.64 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 35 Polarization: -0.52 SS G_CDS: -2.30 Total: -2.82 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.40 -5.57 -34.97 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026293.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.364 kcal (2) G-P(sol) polarization free energy of solvation -29.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds