Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99899 * 2 1 4 4 C 1.50701 * 109.47230 * 179.97438 * 3 2 1 5 5 C 1.39684 * 126.32872 * 0.02562 * 4 3 2 6 6 C 1.39584 * 106.48128 * 179.97438 * 5 4 3 7 7 C 1.39709 * 126.18939 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00234 * 359.97438 * 7 6 5 9 9 C 1.40135 * 119.99824 * 180.02562 * 7 6 5 10 10 N 1.30833 * 119.99985 * 359.72664 * 9 7 6 11 11 Si 1.86795 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47273 * 59.99814 * 11 9 7 13 13 H 1.48495 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47290 * 300.00010 * 11 9 7 15 15 O 1.35112 * 107.61701 * 0.25999 * 6 5 4 16 16 C 1.34268 * 109.37972 * 359.56467 * 15 6 5 17 17 Br 1.89098 * 125.41391 * 180.17238 * 16 15 6 18 18 H 1.09004 * 109.47189 * 59.99791 * 1 2 3 19 19 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.47464 * 299.99879 * 1 2 3 21 21 H 1.09007 * 109.47412 * 60.00051 * 3 2 1 22 22 H 1.09000 * 109.47149 * 299.99932 * 3 2 1 23 23 H 1.07993 * 126.75856 * 359.97438 * 5 4 3 24 24 H 0.97000 * 120.00270 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2486 -0.0006 0.0006 6 6 5.5948 0.3682 0.0007 7 6 6.6884 -0.5013 0.0013 8 1 6.5290 -1.5695 0.0021 9 6 7.9921 0.0126 0.0019 10 7 8.1852 1.3066 -0.0035 11 14 9.4542 -1.1499 0.0019 12 1 9.4064 -2.0055 -1.2109 13 1 10.7130 -0.3621 0.0032 14 1 9.4057 -2.0064 1.2141 15 8 5.6490 1.7182 0.0066 16 6 4.4013 2.2142 0.0006 17 35 3.9522 4.0511 0.0006 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6885 1.8465 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.8539 -1.0058 0.0006 24 1 9.0876 1.6623 -0.0035 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260026293.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = -65.123346 kcal Electronic energy + Delta-G solvation = -12129.535846 eV Core-core repulsion = 9668.841829 eV Total energy + Delta-G solvation = -2460.694018 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.39769 -38.74158 -35.71544 -33.94957 -32.43947 -30.78712 -28.33677 -26.87175 -25.52953 -21.90189 -21.27963 -19.07639 -17.37216 -17.14095 -16.91265 -16.42581 -16.11893 -15.61978 -14.90261 -13.92878 -13.59038 -13.42031 -13.00193 -12.99640 -12.73467 -12.51798 -12.11377 -11.95276 -11.80530 -11.28252 -11.28112 -10.80016 -10.02162 -9.18939 -8.82367 -6.56436 0.51191 1.05800 1.38648 1.51532 1.54634 2.01764 2.16238 2.88292 3.13797 3.39148 4.12884 4.36125 4.46358 4.58379 4.63561 4.84823 4.93533 5.03620 5.30111 5.46428 5.86176 5.99123 6.33161 6.48689 6.57091 7.04893 8.18953 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.008410 C = 0.006163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.830703 B = 3328.453846 C = 4541.835637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.409 6.409 3 C 0.144 3.856 4 C -0.087 4.087 5 C -0.382 4.382 6 C 0.185 3.815 7 C -0.467 4.467 8 H 0.118 0.882 9 C 0.021 3.979 10 N -0.809 5.809 11 Si 1.009 2.991 12 H -0.252 1.252 13 H -0.265 1.265 14 H -0.252 1.252 15 O -0.169 6.169 16 C -0.189 4.189 17 Br 0.020 6.980 18 H 0.053 0.947 19 H 0.099 0.901 20 H 0.053 0.947 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.124 0.876 24 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 2.515 0.006 7.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C 0.067 3.933 4 C -0.091 4.091 5 C -0.404 4.404 6 C 0.131 3.869 7 C -0.495 4.495 8 H 0.135 0.865 9 C -0.197 4.197 10 N -0.435 5.435 11 Si 0.827 3.173 12 H -0.176 1.176 13 H -0.189 1.189 14 H -0.176 1.176 15 O -0.068 6.068 16 C -0.314 4.314 17 Br 0.103 6.897 18 H 0.072 0.928 19 H 0.118 0.882 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.086 0.914 23 H 0.142 0.858 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.090 3.433 0.004 7.878 hybrid contribution 0.385 -0.396 0.004 0.552 sum -6.705 3.037 0.008 7.361 Atomic orbital electron populations 1.22990 0.79174 1.04022 1.01084 1.87912 1.21685 1.27723 1.95569 1.20595 0.87276 0.84640 1.00752 1.19706 0.94974 0.92016 1.02385 1.21236 0.91159 0.97586 1.30374 1.20266 0.95065 0.79374 0.92245 1.19255 0.89131 0.94559 1.46554 0.86453 1.27292 1.04015 0.97653 0.90786 1.69857 1.26212 1.15088 1.32318 0.84843 0.74192 0.77596 0.80689 1.17584 1.18925 1.17582 1.84427 1.26537 1.21174 1.74654 1.22957 0.85255 0.90874 1.32315 1.96355 1.90081 1.04666 1.98628 0.92848 0.88222 0.92859 0.91366 0.91357 0.85757 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 14 2 O -0.41 -15.25 10.10 -148.98 -1.51 -16.76 14 3 C 0.14 5.48 6.17 71.24 0.44 5.92 14 4 C -0.09 -4.26 6.10 -20.06 -0.12 -4.38 14 5 C -0.38 -20.73 10.28 22.94 0.24 -20.49 14 6 C 0.18 10.74 6.79 22.95 0.16 10.90 14 7 C -0.47 -25.48 9.32 23.09 0.22 -25.26 14 8 H 0.12 5.89 7.85 -2.91 -0.02 5.87 14 9 C 0.02 1.04 5.50 85.30 0.47 1.51 14 10 N -0.81 -43.63 12.01 21.87 0.26 -43.37 14 11 Si 1.01 36.95 29.56 68.60 2.03 38.98 14 12 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14 13 H -0.27 -9.16 7.11 99.48 0.71 -8.45 14 14 H -0.25 -8.80 7.11 99.48 0.71 -8.10 14 15 O -0.17 -9.97 8.97 -10.30 -0.09 -10.06 14 16 C -0.19 -9.67 7.80 67.27 0.52 -9.15 14 17 Br 0.02 0.78 33.77 -20.37 -0.69 0.09 14 18 H 0.05 1.13 8.14 -2.38 -0.02 1.11 14 19 H 0.10 2.05 8.14 -2.39 -0.02 2.03 14 20 H 0.05 1.12 8.14 -2.38 -0.02 1.10 14 21 H 0.07 2.35 8.14 -2.38 -0.02 2.33 14 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 14 23 H 0.12 6.52 7.96 -2.91 -0.02 6.50 14 24 H 0.30 14.25 8.30 -92.71 -0.77 13.48 14 Total: -1.00 -64.53 243.52 4.38 -60.15 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.21 Total: 10.11 kcal Atomic # 6 Polarization: -42.31 SS G_CDS: 3.17 Total: -39.14 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.26 Total: -43.37 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.60 Total: -26.82 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 35 Polarization: 0.78 SS G_CDS: -0.69 Total: 0.09 kcal Total: -64.53 4.38 -60.15 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260026293.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.970 kcal (2) G-P(sol) polarization free energy of solvation -64.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds