Wall clock time and date at job start Mon Mar 30 2020 06:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00115 * 2 1 4 4 H 1.09004 * 109.46975 * 325.12521 * 3 2 1 5 5 C 1.50702 * 109.47065 * 205.13149 * 3 2 1 6 6 H 1.07996 * 120.00059 * 245.22757 * 5 3 2 7 7 C 1.37880 * 120.00267 * 65.22135 * 5 3 2 8 8 N 1.31517 * 119.99758 * 355.03528 * 7 5 3 9 9 Si 1.86798 * 120.00382 * 175.03054 * 7 5 3 10 10 H 1.48494 * 109.47150 * 90.00131 * 9 7 5 11 11 H 1.48503 * 109.47296 * 210.00581 * 9 7 5 12 12 H 1.48500 * 109.46822 * 330.00403 * 9 7 5 13 13 C 1.50695 * 109.47376 * 85.12973 * 3 2 1 14 14 C 1.34496 * 125.78282 * 220.32474 * 13 3 2 15 15 C 1.41390 * 106.85246 * 180.13888 * 14 13 3 16 16 C 1.34616 * 106.83119 * 359.60796 * 15 14 13 17 17 Br 1.89105 * 125.79886 * 180.22163 * 16 15 14 18 18 O 1.34307 * 108.40451 * 0.24118 * 16 15 14 19 19 H 1.09001 * 109.47236 * 64.98327 * 1 2 3 20 20 H 1.08997 * 109.47447 * 184.98484 * 1 2 3 21 21 H 1.09000 * 109.47155 * 304.98560 * 1 2 3 22 22 H 0.96999 * 120.00201 * 179.97438 * 8 7 5 23 23 H 1.08001 * 126.57315 * 0.02562 * 14 13 3 24 24 H 1.08008 * 126.58585 * 179.87350 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3878 1.9803 -0.5876 5 6 3.3897 1.2411 -0.6034 6 1 4.2557 1.4570 0.0046 7 6 3.5462 0.9065 -1.9318 8 7 2.5022 0.5486 -2.6472 9 14 5.2410 0.9615 -2.7155 10 1 5.9005 -0.3600 -2.5619 11 1 5.1086 1.2839 -4.1591 12 1 6.0610 2.0045 -2.0486 13 6 2.1044 1.8134 1.4156 14 6 1.8514 3.0715 1.8181 15 6 2.0651 3.1057 3.2153 16 6 2.4279 1.8631 3.5847 17 35 2.8375 1.3076 5.3453 18 8 2.4499 1.0849 2.4903 19 1 -0.3634 0.4346 -0.9313 20 1 -0.3634 -1.0237 0.0893 21 1 -0.3633 0.5892 0.8420 22 1 2.6122 0.3136 -3.5818 23 1 1.5455 3.8978 1.1935 24 1 1.9541 3.9631 3.8628 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184648.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:19 Heat of formation + Delta-G solvation = -25.926734 kcal Electronic energy + Delta-G solvation = -12372.886459 eV Core-core repulsion = 9913.892133 eV Total energy + Delta-G solvation = -2458.994325 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.96354 -36.56238 -32.80715 -32.56425 -31.66057 -29.47773 -26.58124 -25.10321 -22.71022 -21.27699 -19.74880 -16.95576 -16.71394 -15.41100 -14.93846 -14.86984 -14.15792 -13.58493 -12.98570 -12.45514 -12.31559 -12.09326 -11.76483 -11.10266 -10.98607 -10.86022 -10.41889 -10.29210 -10.08424 -9.53509 -9.34064 -8.76788 -8.38628 -7.78990 -6.22822 -4.36535 1.29311 2.11924 3.09315 3.24336 3.30740 3.34995 4.03134 4.29264 4.90917 5.40285 5.48170 5.73136 6.09025 6.18900 6.28437 6.38054 6.50230 6.55248 6.78531 6.98688 7.59860 7.70589 7.88044 8.60888 8.79628 9.34198 10.84407 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.006503 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.021225 B = 4304.688358 C = 4687.889593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.363 6.363 3 C 0.283 3.717 4 H 0.060 0.940 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.080 3.920 8 N -0.861 5.861 9 Si 0.904 3.096 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.056 3.944 14 C -0.246 4.246 15 C -0.150 4.150 16 C -0.064 4.064 17 Br 0.023 6.977 18 O -0.146 6.146 19 H 0.035 0.965 20 H 0.063 0.937 21 H 0.016 0.984 22 H 0.266 0.734 23 H 0.150 0.850 24 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 3.439 12.059 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.281 6.281 3 C 0.226 3.774 4 H 0.077 0.923 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.127 4.127 8 N -0.496 5.496 9 Si 0.731 3.269 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.195 1.195 13 C 0.001 3.999 14 C -0.266 4.266 15 C -0.172 4.172 16 C -0.192 4.192 17 Br 0.107 6.893 18 O -0.042 6.042 19 H 0.054 0.946 20 H 0.081 0.919 21 H 0.034 0.966 22 H 0.076 0.924 23 H 0.168 0.832 24 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.714 2.689 12.539 12.939 hybrid contribution 0.500 0.513 -0.680 0.988 sum -1.214 3.203 11.859 12.344 Atomic orbital electron populations 1.22514 0.85383 1.00270 0.98264 1.88310 1.15996 1.30189 1.93609 1.18756 0.95835 0.83292 0.79473 0.92281 1.20912 0.90553 1.49996 0.94862 0.91373 1.25047 0.97586 0.93201 0.96912 1.70003 1.29776 1.41458 1.08407 0.86398 0.83412 0.78845 0.78283 1.20175 1.20802 1.19452 1.24933 0.94542 0.90625 0.89753 1.21530 1.12598 0.98288 0.94199 1.21551 1.03946 0.95726 0.95994 1.23581 1.16187 0.92214 0.87209 1.96670 1.93903 1.92738 1.06013 1.84200 1.67400 1.38626 1.13942 0.94647 0.91859 0.96583 0.92404 0.83188 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.80 101.05 1.09 1.79 14 2 O -0.36 -9.52 9.92 -37.35 -0.37 -9.89 14 3 C 0.28 7.25 2.37 -29.04 -0.07 7.18 14 4 H 0.06 1.53 7.88 -51.93 -0.41 1.12 14 5 C -0.53 -14.61 8.74 -34.44 -0.30 -14.91 14 6 H 0.07 1.90 7.75 -52.49 -0.41 1.49 14 7 C 0.08 2.17 5.43 -17.82 -0.10 2.07 14 8 N -0.86 -24.17 12.96 55.43 0.72 -23.45 14 9 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 14 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 12 H -0.27 -6.13 7.11 56.52 0.40 -5.72 14 13 C 0.06 1.28 5.86 -35.63 -0.21 1.07 14 14 C -0.25 -4.84 10.80 -39.71 -0.43 -5.27 14 15 C -0.15 -2.64 10.86 -39.66 -0.43 -3.07 14 16 C -0.06 -1.22 7.80 29.45 0.23 -0.99 14 17 Br 0.02 0.34 34.09 -68.01 -2.32 -1.97 14 18 O -0.15 -3.34 10.65 3.45 0.04 -3.30 14 19 H 0.03 0.74 8.14 -51.93 -0.42 0.32 14 20 H 0.06 1.19 8.14 -51.93 -0.42 0.77 14 21 H 0.02 0.31 7.95 -51.93 -0.41 -0.10 14 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 14 23 H 0.15 2.61 8.06 -52.49 -0.42 2.18 14 24 H 0.15 2.09 8.06 -52.48 -0.42 1.66 14 LS Contribution 245.45 15.07 3.70 3.70 Total: -1.00 -29.21 245.45 -5.53 -34.74 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -2.05 Total: -3.53 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.21 Total: -12.12 kcal Atomic # 7 Polarization: -24.17 SS G_CDS: 0.72 Total: -23.45 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.33 Total: -13.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 35 Polarization: 0.34 SS G_CDS: -2.32 Total: -1.97 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -29.21 -5.53 -34.74 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184648.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.812 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds