Wall clock time and date at job start Mon Mar 30 2020 06:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00115 * 2 1 4 4 H 1.09004 * 109.46975 * 325.12521 * 3 2 1 5 5 C 1.50702 * 109.47065 * 205.13149 * 3 2 1 6 6 H 1.07996 * 120.00059 * 245.22757 * 5 3 2 7 7 C 1.37880 * 120.00267 * 65.22135 * 5 3 2 8 8 N 1.31517 * 119.99758 * 355.03528 * 7 5 3 9 9 Si 1.86798 * 120.00382 * 175.03054 * 7 5 3 10 10 H 1.48494 * 109.47150 * 90.00131 * 9 7 5 11 11 H 1.48503 * 109.47296 * 210.00581 * 9 7 5 12 12 H 1.48500 * 109.46822 * 330.00403 * 9 7 5 13 13 C 1.50695 * 109.47376 * 85.12973 * 3 2 1 14 14 C 1.34496 * 125.78282 * 220.32474 * 13 3 2 15 15 C 1.41390 * 106.85246 * 180.13888 * 14 13 3 16 16 C 1.34616 * 106.83119 * 359.60796 * 15 14 13 17 17 Br 1.89105 * 125.79886 * 180.22163 * 16 15 14 18 18 O 1.34307 * 108.40451 * 0.24118 * 16 15 14 19 19 H 1.09001 * 109.47236 * 64.98327 * 1 2 3 20 20 H 1.08997 * 109.47447 * 184.98484 * 1 2 3 21 21 H 1.09000 * 109.47155 * 304.98560 * 1 2 3 22 22 H 0.96999 * 120.00201 * 179.97438 * 8 7 5 23 23 H 1.08001 * 126.57315 * 0.02562 * 14 13 3 24 24 H 1.08008 * 126.58585 * 179.87350 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3878 1.9803 -0.5876 5 6 3.3897 1.2411 -0.6034 6 1 4.2557 1.4570 0.0046 7 6 3.5462 0.9065 -1.9318 8 7 2.5022 0.5486 -2.6472 9 14 5.2410 0.9615 -2.7155 10 1 5.9005 -0.3600 -2.5619 11 1 5.1086 1.2839 -4.1591 12 1 6.0610 2.0045 -2.0486 13 6 2.1044 1.8134 1.4156 14 6 1.8514 3.0715 1.8181 15 6 2.0651 3.1057 3.2153 16 6 2.4279 1.8631 3.5847 17 35 2.8375 1.3076 5.3453 18 8 2.4499 1.0849 2.4903 19 1 -0.3634 0.4346 -0.9313 20 1 -0.3634 -1.0237 0.0893 21 1 -0.3633 0.5892 0.8420 22 1 2.6122 0.3136 -3.5818 23 1 1.5455 3.8978 1.1935 24 1 1.9541 3.9631 3.8628 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184648.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:19 Heat of formation + Delta-G solvation = -44.260030 kcal Electronic energy + Delta-G solvation = -12373.681450 eV Core-core repulsion = 9913.892133 eV Total energy + Delta-G solvation = -2459.789317 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.53684 -38.45465 -34.80187 -34.12905 -33.12274 -31.17582 -28.31757 -26.94604 -24.56666 -22.81031 -21.35404 -18.96294 -18.34644 -17.09920 -16.79482 -16.64520 -15.96181 -15.41149 -14.59764 -13.98592 -13.81577 -13.76896 -13.60804 -12.89191 -12.74777 -12.30290 -12.10653 -12.04313 -11.64977 -11.45917 -10.88309 -10.77014 -10.27563 -9.34710 -8.26939 -6.49407 -0.10100 0.57521 1.41542 1.42458 1.53425 1.59075 2.36492 2.44909 2.93147 3.65762 4.02350 4.11464 4.53417 4.57677 4.64773 4.82918 4.86054 4.88974 4.95966 5.45985 5.60695 5.86991 6.04023 6.54939 6.90870 7.25454 8.80000 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.032971 B = 0.006503 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.021225 B = 4304.688358 C = 4687.889593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.396 6.396 3 C 0.286 3.714 4 H 0.045 0.955 5 C -0.553 4.553 6 H 0.056 0.944 7 C 0.034 3.966 8 N -0.890 5.890 9 Si 0.969 3.031 10 H -0.276 1.276 11 H -0.270 1.270 12 H -0.264 1.264 13 C 0.013 3.987 14 C -0.232 4.232 15 C -0.140 4.140 16 C -0.077 4.077 17 Br 0.062 6.938 18 O -0.175 6.175 19 H 0.031 0.969 20 H 0.084 0.916 21 H 0.030 0.970 22 H 0.270 0.730 23 H 0.169 0.831 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 4.272 13.153 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C 0.229 3.771 4 H 0.063 0.937 5 C -0.589 4.589 6 H 0.075 0.925 7 C -0.170 4.170 8 N -0.526 5.526 9 Si 0.792 3.208 10 H -0.202 1.202 11 H -0.195 1.195 12 H -0.189 1.189 13 C -0.040 4.040 14 C -0.252 4.252 15 C -0.162 4.162 16 C -0.204 4.204 17 Br 0.146 6.854 18 O -0.072 6.072 19 H 0.050 0.950 20 H 0.103 0.897 21 H 0.049 0.951 22 H 0.079 0.921 23 H 0.187 0.813 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.381 3.532 13.639 14.156 hybrid contribution 0.342 0.247 -0.865 0.962 sum -1.040 3.779 12.774 13.361 Atomic orbital electron populations 1.22637 0.83092 1.01935 0.98655 1.88190 1.18611 1.30714 1.94015 1.18431 0.94586 0.82712 0.81357 0.93714 1.21193 0.91507 1.50676 0.95558 0.92530 1.25862 1.01358 0.92574 0.97249 1.70090 1.31679 1.42086 1.08766 0.85412 0.78826 0.78756 0.77814 1.20159 1.19500 1.18869 1.24467 0.98325 0.91936 0.89248 1.21872 1.10348 0.97349 0.95598 1.21975 1.02410 0.96476 0.95300 1.24348 1.15392 0.92717 0.87896 1.96699 1.93674 1.92660 1.02416 1.84131 1.68264 1.39924 1.14909 0.95042 0.89713 0.95121 0.92084 0.81299 0.79295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.43 10.80 113.37 1.22 2.65 14 2 O -0.40 -21.27 9.92 -146.96 -1.46 -22.72 14 3 C 0.29 15.00 2.37 29.10 0.07 15.07 14 4 H 0.05 2.41 7.88 -2.39 -0.02 2.39 14 5 C -0.55 -31.39 8.74 25.60 0.22 -31.17 14 6 H 0.06 3.23 7.75 -2.91 -0.02 3.21 14 7 C 0.03 1.86 5.43 84.65 0.46 2.32 14 8 N -0.89 -50.73 12.96 21.45 0.28 -50.45 14 9 Si 0.97 43.00 29.54 68.60 2.03 45.02 14 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 14 11 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 12 H -0.26 -11.38 7.11 99.48 0.71 -10.67 14 13 C 0.01 0.62 5.86 24.83 0.15 0.76 14 14 C -0.23 -8.80 10.80 22.19 0.24 -8.57 14 15 C -0.14 -4.55 10.86 22.22 0.24 -4.31 14 16 C -0.08 -2.78 7.80 66.99 0.52 -2.25 14 17 Br 0.06 1.70 34.09 -20.37 -0.69 1.00 14 18 O -0.18 -8.00 10.65 -0.98 -0.01 -8.01 14 19 H 0.03 1.33 8.14 -2.39 -0.02 1.31 14 20 H 0.08 3.15 8.14 -2.39 -0.02 3.13 14 21 H 0.03 1.18 7.95 -2.39 -0.02 1.17 14 22 H 0.27 14.36 8.31 -92.71 -0.77 13.59 14 23 H 0.17 5.58 8.06 -2.91 -0.02 5.56 14 24 H 0.19 4.47 8.06 -2.91 -0.02 4.45 14 Total: -1.00 -63.10 245.45 4.47 -58.63 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.20 Total: 2.02 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.13 Total: -25.49 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.28 Total: -50.45 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -1.47 Total: -30.73 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 35 Polarization: 1.70 SS G_CDS: -0.69 Total: 1.00 kcal Total: -63.10 4.47 -58.63 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184648.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.366 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds