Wall clock time and date at job start Mon Mar 30 2020 07:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36049 * 117.00203 * 2 1 4 4 C 1.39108 * 120.07152 * 270.29487 * 3 2 1 5 5 O 1.36014 * 120.04666 * 359.97438 * 4 3 2 6 6 C 1.38564 * 119.90129 * 180.25263 * 4 3 2 7 7 C 1.50699 * 119.97601 * 179.72739 * 6 4 3 8 8 C 1.50706 * 109.46817 * 84.72650 * 7 6 4 9 9 H 1.07995 * 120.00167 * 359.72198 * 8 7 6 10 10 C 1.37879 * 119.99394 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99350 * 179.97438 * 10 8 7 12 12 Si 1.86798 * 120.00608 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47353 * 89.99430 * 12 10 8 14 14 H 1.48494 * 109.47031 * 209.99977 * 12 10 8 15 15 H 1.48504 * 109.46680 * 329.99678 * 12 10 8 16 16 C 1.38275 * 120.04839 * 359.45489 * 6 4 3 17 17 C 1.38320 * 120.14474 * 0.27205 * 16 6 4 18 18 Cl 1.73589 * 119.95018 * 180.02562 * 17 16 6 19 19 C 1.38549 * 120.09522 * 359.97438 * 17 16 6 20 20 F 1.35097 * 120.01954 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.47091 * 59.99594 * 1 2 3 22 22 H 1.08999 * 109.47660 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47086 * 300.00083 * 1 2 3 24 24 H 0.96702 * 114.00118 * 270.26683 * 5 4 3 25 25 H 1.09000 * 109.47247 * 324.72713 * 7 6 4 26 26 H 1.09001 * 109.47358 * 204.72140 * 7 6 4 27 27 H 0.97005 * 119.99656 * 180.02562 * 11 10 8 28 28 H 1.07995 * 119.92954 * 180.25868 * 16 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3577 1.8361 -1.2038 5 8 2.0451 1.2348 -2.3831 6 6 2.9915 3.0682 -1.1997 7 6 3.3347 3.7427 -2.5029 8 6 2.1391 4.5144 -2.9992 9 1 1.2211 4.5126 -2.4303 10 6 2.2157 5.2185 -4.1821 11 7 1.1722 5.8915 -4.6154 12 14 3.8011 5.2155 -5.1700 13 1 3.7824 4.0849 -6.1326 14 1 3.9242 6.4957 -5.9123 15 1 4.9571 5.0634 -4.2503 16 6 3.3043 3.6820 -0.0008 17 6 2.9909 3.0660 1.1974 18 17 3.3854 3.8414 2.6996 19 6 2.3618 1.8316 1.2003 20 9 2.0569 1.2312 2.3714 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 2.7403 0.6570 -2.7265 25 1 3.6123 2.9893 -3.2400 26 1 4.1699 4.4261 -2.3495 27 1 1.2260 6.3866 -5.4479 28 1 3.7946 4.6442 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389686.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:43 Heat of formation + Delta-G solvation = -129.291250 kcal Electronic energy + Delta-G solvation = -17284.252527 eV Core-core repulsion = 14047.576456 eV Total energy + Delta-G solvation = -3236.676072 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.10837 -41.39773 -38.93438 -38.14437 -37.09919 -35.20758 -33.01258 -30.80489 -29.18645 -27.89893 -25.08663 -23.91833 -22.36330 -19.83502 -18.98195 -18.73083 -18.55745 -17.70554 -17.26375 -16.50260 -16.23267 -15.92376 -15.72378 -15.27036 -14.98371 -14.63739 -14.09064 -13.80876 -13.61140 -13.39845 -12.89342 -12.66755 -12.45761 -12.26243 -12.13081 -11.82932 -11.72432 -11.54539 -10.98163 -10.74471 -9.79462 -9.50687 -8.25134 -6.30467 -0.29225 -0.20740 0.81546 1.42561 1.44069 1.54702 1.99209 2.39582 2.53526 2.80864 3.10370 3.24327 3.71806 3.83415 4.11337 4.31732 4.41361 4.52535 4.61285 4.71037 4.76371 4.91898 5.03694 5.28222 5.49182 5.58895 6.15464 6.26044 6.73691 6.79189 7.31911 8.91724 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.021370 B = 0.007152 C = 0.005861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.912934 B = 3914.237262 C = 4776.376941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.330 6.330 3 C 0.040 3.960 4 C 0.125 3.875 5 O -0.484 6.484 6 C -0.066 4.066 7 C 0.029 3.971 8 C -0.512 4.512 9 H 0.023 0.977 10 C 0.008 3.992 11 N -0.952 5.952 12 Si 0.950 3.050 13 H -0.267 1.267 14 H -0.289 1.289 15 H -0.236 1.236 16 C -0.072 4.072 17 C -0.068 4.068 18 Cl -0.037 7.037 19 C 0.080 3.920 20 F -0.124 7.124 21 H 0.043 0.957 22 H 0.128 0.872 23 H 0.048 0.952 24 H 0.409 0.591 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.266 0.734 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 -9.679 10.052 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.246 6.246 3 C -0.006 4.006 4 C 0.079 3.921 5 O -0.296 6.296 6 C -0.067 4.067 7 C -0.008 4.008 8 C -0.550 4.550 9 H 0.042 0.958 10 C -0.188 4.188 11 N -0.592 5.592 12 Si 0.773 3.227 13 H -0.192 1.192 14 H -0.215 1.215 15 H -0.159 1.159 16 C -0.090 4.090 17 C -0.096 4.096 18 Cl -0.008 7.008 19 C 0.059 3.941 20 F -0.102 7.102 21 H 0.062 0.938 22 H 0.146 0.854 23 H 0.067 0.933 24 H 0.268 0.732 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.072 -9.421 10.158 14.753 hybrid contribution 0.194 0.185 -0.344 0.436 sum 5.266 -9.236 9.814 14.469 Atomic orbital electron populations 1.23275 0.76925 1.05298 1.00799 1.86001 1.21809 1.22691 1.94141 1.18839 1.02847 0.88629 0.90246 1.18464 0.96934 0.91749 0.84983 1.84844 1.45729 1.64721 1.34316 1.20502 0.95641 0.93650 0.96879 1.18569 0.96500 0.95589 0.90098 1.21006 0.97782 1.29395 1.06852 0.95821 1.25951 1.00230 0.94274 0.98391 1.70065 1.32541 1.33665 1.22947 0.85668 0.80143 0.77720 0.79186 1.19158 1.21474 1.15873 1.20969 0.99292 1.00490 0.88294 1.20768 1.05471 0.93751 0.89581 1.98362 1.92508 1.79885 1.30074 1.17467 1.03512 0.91812 0.81300 1.91489 1.91178 1.82860 1.44672 0.93776 0.85383 0.93342 0.73164 0.93795 0.93430 0.92479 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.13 113.37 1.26 2.04 15 2 O -0.33 -10.22 10.07 -80.21 -0.81 -11.03 15 3 C 0.04 1.34 5.74 22.59 0.13 1.47 15 4 C 0.12 4.48 6.69 22.56 0.15 4.63 15 5 O -0.48 -16.74 12.42 -79.80 -0.99 -17.73 15 6 C -0.07 -2.47 5.08 -19.78 -0.10 -2.57 15 7 C 0.03 1.26 3.89 29.10 0.11 1.37 15 8 C -0.51 -28.13 9.65 25.60 0.25 -27.88 15 9 H 0.02 1.48 7.98 -2.91 -0.02 1.46 15 10 C 0.01 0.47 5.47 84.66 0.46 0.93 15 11 N -0.95 -58.35 13.96 21.45 0.30 -58.05 15 12 Si 0.95 41.27 27.47 68.60 1.88 43.15 15 13 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 14 H -0.29 -12.59 7.11 99.48 0.71 -11.88 15 15 H -0.24 -9.07 6.54 99.48 0.65 -8.42 15 16 C -0.07 -2.39 9.45 22.30 0.21 -2.18 15 17 C -0.07 -2.13 6.32 22.36 0.14 -1.99 15 18 Cl -0.04 -1.01 28.61 -2.72 -0.08 -1.09 15 19 C 0.08 2.59 7.28 22.45 0.16 2.75 15 20 F -0.12 -3.88 16.67 44.97 0.75 -3.13 15 21 H 0.04 1.23 8.14 -2.39 -0.02 1.21 15 22 H 0.13 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 24 H 0.41 9.69 9.06 -74.06 -0.67 9.02 15 25 H 0.04 1.76 7.12 -2.39 -0.02 1.74 15 26 H 0.05 1.90 7.11 -2.39 -0.02 1.88 15 27 H 0.27 15.24 8.31 -92.70 -0.77 14.47 15 28 H 0.16 4.85 8.06 -2.91 -0.02 4.83 15 Total: -1.00 -66.30 272.73 4.32 -61.98 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.48 Total: 7.32 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 2.78 Total: -21.43 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.30 Total: -58.05 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.80 Total: -28.75 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.75 Total: -3.13 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.15 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -66.30 4.32 -61.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389686.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.314 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds