Wall clock time and date at job start Mon Mar 30 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 117.00271 * 2 1 4 4 C 1.38689 * 120.04967 * 0.02562 * 3 2 1 5 5 C 1.38263 * 119.94635 * 179.97438 * 4 3 2 6 6 Cl 1.73594 * 119.98034 * 180.02562 * 5 4 3 7 7 C 1.38398 * 120.04514 * 359.97438 * 5 4 3 8 8 C 1.38231 * 120.10762 * 0.02562 * 7 5 4 9 9 C 1.50698 * 119.96933 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47294 * 264.99884 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.38250 * 120.05547 * 0.25689 * 8 7 5 19 19 Cl 1.73602 * 120.02751 * 179.74481 * 18 8 7 20 20 H 1.09003 * 109.46639 * 300.00050 * 1 2 3 21 21 H 1.09004 * 109.46922 * 59.99228 * 1 2 3 22 22 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.03397 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.94389 * 180.02562 * 7 5 4 25 25 H 1.09001 * 109.46665 * 145.00265 * 9 8 7 26 26 H 1.09000 * 109.47722 * 25.00597 * 9 8 7 27 27 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3749 0.0005 5 6 1.9219 3.6057 0.0011 6 17 0.9786 5.0630 0.0024 7 6 3.3040 3.6766 0.0016 8 6 4.0578 2.5180 0.0011 9 6 5.5627 2.5989 0.0011 10 6 6.0709 2.5028 -1.4144 11 1 5.3739 2.3944 -2.2322 12 6 7.4257 2.5532 -1.6654 13 7 8.2745 2.6846 -0.6694 14 14 8.0556 2.4348 -3.4199 15 1 8.1483 3.7963 -4.0056 16 1 9.3993 1.8025 -3.4219 17 1 7.1201 1.6114 -4.2273 18 6 3.4324 1.2850 -0.0054 19 17 4.3798 -0.1697 -0.0127 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2133 2.3200 0.0005 24 1 3.7944 4.6389 0.0024 25 1 5.9706 1.7774 0.5901 26 1 5.8756 3.5481 0.4359 27 1 9.2276 2.7205 -0.8460 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260857863.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:11 Heat of formation + Delta-G solvation = -37.617428 kcal Electronic energy + Delta-G solvation = -14856.731134 eV Core-core repulsion = 12052.366713 eV Total energy + Delta-G solvation = -2804.364421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.96939 -37.62136 -36.37237 -35.52721 -33.33526 -31.18443 -29.96140 -27.57084 -26.81872 -23.44733 -22.24884 -20.67430 -17.64236 -16.43574 -16.35346 -15.94562 -15.69557 -14.80833 -14.49286 -13.86531 -13.34604 -13.13833 -12.35161 -12.10337 -12.01683 -11.86092 -11.35101 -11.18335 -11.07486 -10.90082 -10.67382 -10.59556 -10.30700 -10.09725 -9.63533 -9.45634 -8.42557 -8.11216 -7.84326 -6.05661 -4.08674 1.37717 1.64469 2.25184 2.86770 3.31320 3.33583 3.37764 3.42343 3.89417 4.45168 4.96784 5.03109 5.12851 5.29780 5.35057 5.39940 5.44909 5.78364 6.03857 6.12545 6.51091 6.59711 6.97337 7.36624 7.47504 7.61467 7.88884 8.23266 8.93685 9.54601 11.04768 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.007439 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.543303 B = 3763.246260 C = 4737.369984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.304 6.304 3 C 0.141 3.859 4 C -0.219 4.219 5 C 0.007 3.993 6 Cl -0.078 7.078 7 C -0.139 4.139 8 C 0.021 3.979 9 C 0.046 3.954 10 C -0.505 4.505 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.894 3.106 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.272 1.272 18 C -0.065 4.065 19 Cl -0.044 7.044 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.099 0.901 23 H 0.137 0.863 24 H 0.140 0.860 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 -1.457 2.372 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.095 3.905 4 C -0.239 4.239 5 C -0.020 4.020 6 Cl -0.050 7.050 7 C -0.158 4.158 8 C 0.019 3.981 9 C 0.009 3.991 10 C -0.544 4.544 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.722 3.278 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.093 4.093 19 Cl -0.015 7.015 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.117 0.883 23 H 0.154 0.846 24 H 0.158 0.842 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.429 -1.651 2.412 14.722 hybrid contribution 0.059 0.135 -0.992 1.003 sum -14.370 -1.516 1.420 14.519 Atomic orbital electron populations 1.23059 0.78704 1.03798 1.01306 1.86176 1.21013 1.25836 1.88639 1.18472 0.90398 0.84353 0.97283 1.20698 0.99929 0.90130 1.13156 1.20634 0.91793 0.86511 1.03058 1.98339 1.72922 1.36768 1.96933 1.20917 0.90484 0.99657 1.04707 1.20484 1.00090 0.88699 0.88781 1.18517 0.82236 0.99474 0.98840 1.20861 0.91647 1.50765 0.91083 0.92441 1.24925 0.96769 0.95050 0.97152 1.69949 1.02463 1.49875 1.30768 0.86551 0.78251 0.78270 0.84776 1.20599 1.21155 1.19721 1.20160 0.87890 0.89755 1.11494 1.98345 1.71812 1.34566 1.96779 0.92699 0.92671 0.88269 0.84572 0.84205 0.93533 0.94593 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 15 2 O -0.30 -4.66 9.96 -19.51 -0.19 -4.85 15 3 C 0.14 2.43 6.68 -39.20 -0.26 2.17 15 4 C -0.22 -3.37 8.82 -39.41 -0.35 -3.71 15 5 C 0.01 0.11 6.32 -39.51 -0.25 -0.14 15 6 Cl -0.08 -1.09 28.95 -51.86 -1.50 -2.60 15 7 C -0.14 -2.59 9.46 -39.52 -0.37 -2.96 15 8 C 0.02 0.44 5.07 -104.62 -0.53 -0.09 15 9 C 0.05 1.14 4.61 -29.03 -0.13 1.01 15 10 C -0.51 -13.69 9.09 -34.44 -0.31 -14.00 15 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 13 N -0.89 -25.73 13.29 55.43 0.74 -24.99 15 14 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 17 H -0.27 -6.47 7.11 56.52 0.40 -6.06 15 18 C -0.07 -1.31 6.33 -39.36 -0.25 -1.56 15 19 Cl -0.04 -0.90 26.95 -51.86 -1.40 -2.30 15 20 H 0.05 0.48 7.66 -51.93 -0.40 0.09 15 21 H 0.05 0.50 7.66 -51.93 -0.40 0.11 15 22 H 0.10 0.76 8.14 -51.93 -0.42 0.34 15 23 H 0.14 1.68 6.30 -52.49 -0.33 1.35 15 24 H 0.14 2.51 8.06 -52.48 -0.42 2.09 15 25 H 0.05 1.22 7.13 -51.93 -0.37 0.85 15 26 H 0.04 0.92 8.05 -51.93 -0.42 0.50 15 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 270.70 15.07 4.08 4.08 Total: -1.00 -28.85 270.70 -7.16 -36.01 By element: Atomic # 1 Polarization: -3.01 SS G_CDS: -2.30 Total: -5.31 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -1.56 Total: -16.39 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -24.99 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.19 Total: -4.85 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -2.90 Total: -4.89 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.85 -7.16 -36.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857863.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.607 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds