Wall clock time and date at job start Mon Mar 30 2020 07:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35926 * 117.00271 * 2 1 4 4 C 1.38689 * 120.04967 * 0.02562 * 3 2 1 5 5 C 1.38263 * 119.94635 * 179.97438 * 4 3 2 6 6 Cl 1.73594 * 119.98034 * 180.02562 * 5 4 3 7 7 C 1.38398 * 120.04514 * 359.97438 * 5 4 3 8 8 C 1.38231 * 120.10762 * 0.02562 * 7 5 4 9 9 C 1.50698 * 119.96933 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47294 * 264.99884 * 9 8 7 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99883 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00043 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47293 * 89.99746 * 14 12 10 16 16 H 1.48504 * 109.47104 * 209.99992 * 14 12 10 17 17 H 1.48495 * 109.47249 * 329.99739 * 14 12 10 18 18 C 1.38250 * 120.05547 * 0.25689 * 8 7 5 19 19 Cl 1.73602 * 120.02751 * 179.74481 * 18 8 7 20 20 H 1.09003 * 109.46639 * 300.00050 * 1 2 3 21 21 H 1.09004 * 109.46922 * 59.99228 * 1 2 3 22 22 H 1.08997 * 109.46902 * 179.97438 * 1 2 3 23 23 H 1.07999 * 120.03397 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.94389 * 180.02562 * 7 5 4 25 25 H 1.09001 * 109.46665 * 145.00265 * 9 8 7 26 26 H 1.09000 * 109.47722 * 25.00597 * 9 8 7 27 27 H 0.97004 * 119.99507 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 1.2919 2.3749 0.0005 5 6 1.9219 3.6057 0.0011 6 17 0.9786 5.0630 0.0024 7 6 3.3040 3.6766 0.0016 8 6 4.0578 2.5180 0.0011 9 6 5.5627 2.5989 0.0011 10 6 6.0709 2.5028 -1.4144 11 1 5.3739 2.3944 -2.2322 12 6 7.4257 2.5532 -1.6654 13 7 8.2745 2.6846 -0.6694 14 14 8.0556 2.4348 -3.4199 15 1 8.1483 3.7963 -4.0056 16 1 9.3993 1.8025 -3.4219 17 1 7.1201 1.6114 -4.2273 18 6 3.4324 1.2850 -0.0054 19 17 4.3798 -0.1697 -0.0127 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 0.2133 2.3200 0.0005 24 1 3.7944 4.6389 0.0024 25 1 5.9706 1.7774 0.5901 26 1 5.8756 3.5481 0.4359 27 1 9.2276 2.7205 -0.8460 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260857863.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:11 Heat of formation + Delta-G solvation = -53.457173 kcal Electronic energy + Delta-G solvation = -14857.417997 eV Core-core repulsion = 12052.366713 eV Total energy + Delta-G solvation = -2805.051284 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.25811 -38.90483 -37.69040 -37.00184 -35.27056 -32.89405 -31.25807 -29.14822 -28.01184 -25.31299 -23.61416 -22.16883 -18.95292 -18.44492 -17.71293 -17.32640 -16.77235 -16.55523 -16.02351 -15.04833 -14.77642 -14.63040 -14.08333 -13.53361 -13.47720 -13.25647 -13.06944 -12.65691 -12.53368 -12.29741 -12.27236 -12.08208 -11.85213 -11.78818 -11.33698 -11.27785 -10.54586 -9.61406 -9.20024 -8.16520 -6.26197 -0.02963 0.25222 0.96505 1.38391 1.41966 1.42860 1.53604 2.22873 2.38351 2.53385 3.17176 3.71788 3.95952 4.03426 4.30047 4.37851 4.43047 4.62849 4.72375 4.77865 5.03636 5.08852 5.35653 5.50763 5.70798 5.76769 6.16865 6.24509 6.82511 7.40533 8.93947 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.007439 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.543303 B = 3763.246260 C = 4737.369984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.149 3.851 4 C -0.201 4.201 5 C 0.012 3.988 6 Cl -0.050 7.050 7 C -0.149 4.149 8 C -0.005 4.005 9 C 0.056 3.944 10 C -0.512 4.512 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.955 3.045 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.087 4.087 19 Cl -0.061 7.061 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.124 0.876 23 H 0.176 0.824 24 H 0.138 0.862 25 H 0.023 0.977 26 H 0.015 0.985 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.286 -1.336 1.579 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.102 3.898 4 C -0.220 4.220 5 C -0.015 4.015 6 Cl -0.021 7.021 7 C -0.168 4.168 8 C -0.006 4.006 9 C 0.019 3.981 10 C -0.550 4.550 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.566 5.566 14 Si 0.780 3.220 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.115 4.115 19 Cl -0.032 7.032 20 H 0.091 0.909 21 H 0.088 0.912 22 H 0.142 0.858 23 H 0.193 0.807 24 H 0.156 0.844 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.042 -1.529 1.619 17.187 hybrid contribution 0.668 0.105 -0.698 0.972 sum -16.374 -1.425 0.920 16.462 Atomic orbital electron populations 1.23500 0.75664 1.06130 1.02805 1.86177 1.24075 1.24852 1.88091 1.18442 0.89464 0.85810 0.96072 1.21069 1.01629 0.88790 1.10522 1.20649 0.91134 0.88101 1.01567 1.98352 1.71820 1.35221 1.96696 1.20867 0.91764 0.98706 1.05445 1.20101 0.98141 0.90396 0.91951 1.18190 0.85320 0.97272 0.97315 1.21107 0.91806 1.50039 0.92071 0.93029 1.25725 0.97075 0.94812 1.00982 1.70061 1.02732 1.51049 1.32784 0.85591 0.77642 0.78588 0.80166 1.19639 1.20764 1.19317 1.20276 0.89302 0.88733 1.13170 1.98325 1.72535 1.35339 1.96970 0.90934 0.91232 0.85807 0.80720 0.84369 0.95888 0.96643 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 15 2 O -0.32 -8.99 9.96 -92.71 -0.92 -9.92 15 3 C 0.15 4.86 6.68 22.52 0.15 5.01 15 4 C -0.20 -5.50 8.82 22.38 0.20 -5.30 15 5 C 0.01 0.38 6.32 22.31 0.14 0.52 15 6 Cl -0.05 -1.24 28.95 -2.72 -0.08 -1.32 15 7 C -0.15 -5.51 9.46 22.31 0.21 -5.30 15 8 C 0.00 -0.20 5.07 -19.86 -0.10 -0.30 15 9 C 0.06 2.90 4.61 29.10 0.13 3.03 15 10 C -0.51 -28.48 9.09 25.60 0.23 -28.25 15 11 H 0.05 2.86 7.74 -2.91 -0.02 2.84 15 12 C 0.01 0.70 5.46 84.65 0.46 1.17 15 13 N -0.93 -54.87 13.29 21.45 0.28 -54.59 15 14 Si 0.96 44.21 29.54 68.60 2.03 46.23 15 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 15 16 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 18 C -0.09 -3.51 6.33 22.41 0.14 -3.37 15 19 Cl -0.06 -2.53 26.95 -2.72 -0.07 -2.60 15 20 H 0.07 0.94 7.66 -2.39 -0.02 0.92 15 21 H 0.07 0.95 7.66 -2.38 -0.02 0.93 15 22 H 0.12 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.18 3.39 6.30 -2.91 -0.02 3.37 15 24 H 0.14 5.02 8.06 -2.91 -0.02 5.00 15 25 H 0.02 1.27 7.13 -2.39 -0.02 1.26 15 26 H 0.02 0.83 8.05 -2.39 -0.02 0.81 15 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -63.17 270.70 5.11 -58.06 By element: Atomic # 1 Polarization: -5.58 SS G_CDS: 1.19 Total: -4.39 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 2.68 Total: -31.48 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.59 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.92 Total: -9.92 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 17 Polarization: -3.77 SS G_CDS: -0.15 Total: -3.93 kcal Total: -63.17 5.11 -58.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260857863.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.604 kcal (2) G-P(sol) polarization free energy of solvation -63.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds