Wall clock time and date at job start Mon Mar 30 2020 07:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36043 * 116.99819 * 2 1 4 4 C 1.38549 * 120.04104 * 0.02562 * 3 2 1 5 5 C 1.38335 * 120.00764 * 179.97438 * 4 3 2 6 6 Cl 1.73600 * 119.94944 * 179.97438 * 5 4 3 7 7 C 1.38541 * 120.09671 * 359.97438 * 5 4 3 8 8 F 1.35100 * 119.95418 * 180.02562 * 7 5 4 9 9 C 1.38413 * 120.08824 * 0.02562 * 7 5 4 10 10 C 1.50695 * 120.00559 * 180.02562 * 9 7 5 11 11 C 1.50695 * 109.47164 * 90.00091 * 10 9 7 12 12 H 1.07997 * 120.00278 * 359.97438 * 11 10 9 13 13 C 1.37885 * 119.99692 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99597 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00237 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47182 * 90.00056 * 15 13 11 17 17 H 1.48505 * 109.46980 * 210.00300 * 15 13 11 18 18 H 1.48502 * 109.47094 * 329.99562 * 15 13 11 19 19 C 1.38560 * 119.98566 * 0.02562 * 9 7 5 20 20 O 1.36016 * 120.04925 * 180.02562 * 19 9 7 21 21 H 1.09000 * 109.46969 * 60.00204 * 1 2 3 22 22 H 1.09003 * 109.47170 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47730 * 299.99908 * 1 2 3 24 24 H 1.07999 * 119.99806 * 0.25180 * 4 3 2 25 25 H 1.09002 * 109.47088 * 210.00567 * 10 9 7 26 26 H 1.09001 * 109.47366 * 329.99668 * 10 9 7 27 27 H 0.96994 * 119.99953 * 179.97438 * 14 13 11 28 28 H 0.96692 * 114.00552 * 89.98758 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2122 0.0000 4 6 1.2927 2.3747 0.0005 5 6 1.9214 3.6069 0.0011 6 17 0.9755 5.0625 0.0011 7 6 3.3049 3.6810 0.0016 8 9 3.9159 4.8859 0.0027 9 6 4.0618 2.5222 0.0011 10 6 5.5665 2.6049 0.0022 11 6 6.0670 2.6311 1.4234 12 1 5.3657 2.5922 2.2438 13 6 7.4205 2.7048 1.6763 14 7 7.8574 2.7272 2.9167 15 14 8.6335 2.7728 0.2575 16 1 8.8785 4.1888 -0.1168 17 1 9.9128 2.1411 0.6693 18 1 8.0735 2.0424 -0.9080 19 6 3.4358 1.2861 -0.0005 20 8 4.1784 0.1465 -0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3635 0.5138 0.8900 24 1 0.2142 2.3188 0.0051 25 1 5.9785 1.7367 -0.5122 26 1 5.8808 3.5139 -0.5106 27 1 8.8094 2.7786 3.0946 28 1 4.3923 -0.1836 0.8828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:10 Heat of formation + Delta-G solvation = -130.811433 kcal Electronic energy + Delta-G solvation = -17318.955073 eV Core-core repulsion = 14082.213081 eV Total energy + Delta-G solvation = -3236.741992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.88174 -41.50716 -39.01259 -38.13487 -36.92627 -35.30711 -33.14679 -30.48794 -29.52116 -27.98732 -25.10540 -23.69457 -22.28206 -19.69923 -19.06711 -18.73966 -18.59367 -17.73148 -16.95302 -16.46326 -16.37205 -16.11507 -15.57813 -15.14309 -14.97233 -14.41927 -14.29015 -13.87340 -13.63648 -13.40780 -12.83027 -12.61998 -12.53735 -12.32858 -12.16179 -11.94407 -11.77020 -11.55509 -11.36567 -10.80968 -9.72382 -9.12975 -8.32566 -6.38086 -0.21897 0.00885 0.83239 1.36483 1.37407 1.49114 2.17059 2.18699 2.33747 2.98551 3.03006 3.27415 3.61990 3.86850 4.22948 4.35888 4.44114 4.47276 4.52701 4.66996 4.81324 4.87337 5.00720 5.32218 5.37381 5.51313 6.16486 6.17896 6.64791 6.76826 7.25553 8.83122 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.007690 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.370421 B = 3640.186304 C = 4615.129530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.314 6.314 3 C 0.114 3.886 4 C -0.163 4.163 5 C -0.041 4.041 6 Cl -0.038 7.038 7 C 0.063 3.937 8 F -0.136 7.136 9 C -0.075 4.075 10 C 0.027 3.973 11 C -0.517 4.517 12 H 0.035 0.965 13 C 0.019 3.981 14 N -0.941 5.941 15 Si 0.941 3.059 16 H -0.270 1.270 17 H -0.278 1.278 18 H -0.247 1.247 19 C 0.097 3.903 20 O -0.485 6.485 21 H 0.072 0.928 22 H 0.125 0.875 23 H 0.070 0.930 24 H 0.186 0.814 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.269 0.731 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.587 -3.119 -7.501 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.227 6.227 3 C 0.067 3.933 4 C -0.183 4.183 5 C -0.069 4.069 6 Cl -0.009 7.009 7 C 0.043 3.957 8 F -0.114 7.114 9 C -0.076 4.076 10 C -0.011 4.011 11 C -0.555 4.555 12 H 0.053 0.947 13 C -0.179 4.179 14 N -0.581 5.581 15 Si 0.764 3.236 16 H -0.195 1.195 17 H -0.203 1.203 18 H -0.170 1.170 19 C 0.050 3.950 20 O -0.296 6.296 21 H 0.091 0.909 22 H 0.143 0.857 23 H 0.089 0.911 24 H 0.203 0.797 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -16.457 -3.093 -7.994 18.556 hybrid contribution 0.839 0.684 0.490 1.188 sum -15.619 -2.409 -7.504 17.495 Atomic orbital electron populations 1.23542 0.75807 1.06277 1.02857 1.86195 1.23907 1.24398 1.88193 1.19101 0.90572 0.85729 0.97902 1.20976 1.02087 0.87843 1.07344 1.20647 0.88971 0.90077 1.07234 1.98359 1.70882 1.34840 1.96836 1.17146 0.89210 0.80831 1.08526 1.91465 1.83590 1.42229 1.94160 1.20288 0.98153 0.91050 0.98157 1.18485 0.87354 0.98264 0.96949 1.20917 0.92391 1.51430 0.90754 0.94658 1.25796 1.00177 0.93745 0.98184 1.70018 1.15470 1.51607 1.21001 0.85797 0.78315 0.79267 0.80239 1.19484 1.20347 1.17046 1.17349 0.86840 0.85874 1.04915 1.84703 1.72063 1.38023 1.34837 0.90948 0.85695 0.91127 0.79726 0.93415 0.95426 0.92186 0.73798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 15 2 O -0.31 -8.02 10.28 -80.11 -0.82 -8.84 15 3 C 0.11 3.44 6.70 22.56 0.15 3.59 15 4 C -0.16 -4.29 8.82 22.37 0.20 -4.10 15 5 C -0.04 -1.32 6.32 22.37 0.14 -1.18 15 6 Cl -0.04 -1.04 28.61 -2.72 -0.08 -1.12 15 7 C 0.06 2.52 7.21 22.38 0.16 2.68 15 8 F -0.14 -5.87 16.03 44.97 0.72 -5.15 15 9 C -0.07 -3.18 5.09 -19.75 -0.10 -3.28 15 10 C 0.03 1.30 3.77 29.10 0.11 1.41 15 11 C -0.52 -29.53 9.65 25.60 0.25 -29.28 15 12 H 0.04 2.22 7.98 -2.91 -0.02 2.19 15 13 C 0.02 1.11 5.47 84.66 0.46 1.57 15 14 N -0.94 -58.01 13.96 21.45 0.30 -57.71 15 15 Si 0.94 44.14 27.47 68.60 1.88 46.02 15 16 H -0.27 -12.37 7.11 99.48 0.71 -11.67 15 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 18 H -0.25 -10.89 6.54 99.48 0.65 -10.24 15 19 C 0.10 3.61 6.69 22.56 0.15 3.76 15 20 O -0.48 -17.80 12.33 -79.81 -0.98 -18.78 15 21 H 0.07 0.81 7.67 -2.39 -0.02 0.79 15 22 H 0.12 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.07 0.82 7.66 -2.38 -0.02 0.80 15 24 H 0.19 3.27 6.29 -2.91 -0.02 3.25 15 25 H 0.05 2.29 6.58 -2.39 -0.02 2.28 15 26 H 0.03 1.35 7.06 -2.39 -0.02 1.34 15 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 15 28 H 0.40 12.70 9.06 -74.06 -0.67 12.03 15 Total: -1.00 -68.62 267.71 4.15 -64.48 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.49 Total: 4.69 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 2.63 Total: -23.58 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.30 Total: -57.71 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.81 Total: -27.62 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.72 Total: -5.15 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -68.62 4.15 -64.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.333 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds