Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38572 * 120.00245 * 89.99907 * 11 10 9 13 13 O 1.36008 * 120.05022 * 0.02562 * 12 11 10 14 14 C 1.39122 * 119.89972 * 179.97438 * 12 11 10 15 15 O 1.36036 * 120.04385 * 180.02562 * 14 12 11 16 16 C 1.38554 * 119.91629 * 0.02562 * 14 12 11 17 17 C 1.38330 * 120.00807 * 359.97438 * 16 14 12 18 18 Cl 1.73601 * 119.94687 * 180.02562 * 17 16 14 19 19 C 1.38409 * 120.00663 * 269.72706 * 11 10 9 20 20 F 1.35097 * 119.95628 * 0.02562 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 0.96700 * 113.99958 * 90.00255 * 13 12 11 27 27 H 0.96701 * 114.00206 * 90.00169 * 15 14 12 28 28 H 1.08003 * 119.99502 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1447 -5.5676 -1.1986 13 8 1.4842 -4.9802 -2.3774 14 6 0.4496 -6.7727 -1.1955 15 8 0.1080 -7.3650 -2.3716 16 6 0.1056 -7.3690 0.0070 17 6 0.4537 -6.7664 1.2025 18 17 0.0225 -7.5152 2.7082 19 6 1.1509 -5.5692 1.2000 20 9 1.4938 -4.9857 2.3693 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 2.3473 -5.2524 -2.7182 27 1 0.7745 -7.9776 -2.7116 28 1 -0.4344 -8.3043 0.0108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = -124.466212 kcal Electronic energy + Delta-G solvation = -17044.734903 eV Core-core repulsion = 13808.268061 eV Total energy + Delta-G solvation = -3236.466842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.70085 -40.22819 -37.14079 -37.09462 -35.89235 -33.89291 -31.96942 -28.95766 -28.80426 -25.33428 -22.68317 -22.49118 -20.53988 -18.71394 -18.10136 -17.39047 -16.66566 -16.34174 -15.62730 -15.28023 -14.77265 -14.46229 -13.95189 -13.81068 -13.31238 -12.77865 -12.63776 -12.37717 -12.11821 -11.57694 -11.41867 -11.14233 -10.91733 -10.81473 -10.62467 -10.27422 -9.91455 -9.72632 -9.14795 -8.47638 -8.38068 -8.33848 -5.98445 -4.02059 0.83231 1.00757 1.94431 3.20863 3.34468 3.38869 3.40991 3.91370 3.99753 4.31419 4.46246 4.75487 5.10780 5.37185 5.40682 5.58464 5.74860 5.82310 6.05491 6.39632 6.47050 6.54904 6.93271 7.33565 7.65584 7.76508 7.78204 7.99408 8.38117 9.03514 9.61514 11.12781 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.005920 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.392625 B = 4728.560066 C = 5545.242490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.094 4.094 12 C 0.116 3.884 13 O -0.467 6.467 14 C 0.081 3.919 15 O -0.479 6.479 16 C -0.113 4.113 17 C -0.067 4.067 18 Cl -0.052 7.052 19 C 0.118 3.882 20 F -0.116 7.116 21 H 0.262 0.738 22 H 0.016 0.984 23 H 0.024 0.976 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.387 0.613 27 H 0.386 0.614 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -17.511 -1.077 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.004 4.004 10 C -0.110 4.110 11 C -0.096 4.096 12 C 0.070 3.930 13 O -0.276 6.276 14 C 0.035 3.965 15 O -0.289 6.289 16 C -0.132 4.132 17 C -0.095 4.095 18 Cl -0.023 7.023 19 C 0.097 3.903 20 F -0.094 7.094 21 H 0.071 0.929 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.243 0.757 27 H 0.241 0.759 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.166 -16.816 -0.792 16.973 hybrid contribution 1.183 0.440 0.211 1.279 sum 3.349 -16.376 -0.581 16.725 Atomic orbital electron populations 1.69964 1.06084 1.26791 1.50294 1.25012 0.94841 0.99240 0.95213 0.86633 0.79556 0.83057 0.78591 1.20212 1.21265 1.20211 1.21122 0.92926 0.90732 1.51288 0.92599 1.19056 0.93519 0.90044 0.97791 1.20764 0.98613 0.89468 1.02139 1.20685 0.99994 0.98846 0.90059 1.18356 0.97546 0.91302 0.85815 1.85020 1.40356 1.68080 1.34181 1.18490 1.00076 0.92346 0.85584 1.84970 1.46463 1.62066 1.35366 1.20881 1.01914 1.01346 0.89108 1.20690 1.04552 0.95536 0.88672 1.98371 1.91841 1.81285 1.30806 1.17037 0.99670 0.91359 0.82206 1.91555 1.89813 1.83354 1.44711 0.92862 0.96518 0.95807 0.91040 0.91427 0.75734 0.75870 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.67 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.87 4.95 -27.88 -0.14 0.73 15 10 C -0.07 -1.49 4.88 -27.89 -0.14 -1.63 15 11 C -0.09 -1.68 5.15 -104.44 -0.54 -2.22 15 12 C 0.12 1.83 6.69 -39.13 -0.26 1.57 15 13 O -0.47 -7.09 12.33 -34.33 -0.42 -7.51 15 14 C 0.08 1.09 6.72 -39.14 -0.26 0.83 15 15 O -0.48 -5.51 13.29 -34.42 -0.46 -5.96 15 16 C -0.11 -1.45 9.76 -39.43 -0.38 -1.83 15 17 C -0.07 -0.98 6.32 -39.43 -0.25 -1.23 15 18 Cl -0.05 -0.69 28.61 -51.86 -1.48 -2.17 15 19 C 0.12 2.03 7.21 -39.41 -0.28 1.75 15 20 F -0.12 -2.17 16.03 2.25 0.04 -2.14 15 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 22 H 0.02 0.48 8.14 -51.93 -0.42 0.05 15 23 H 0.02 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.07 1.36 7.53 -51.93 -0.39 0.97 15 25 H 0.07 1.37 7.63 -51.93 -0.40 0.97 15 26 H 0.39 3.55 9.06 45.56 0.41 3.96 15 27 H 0.39 2.16 9.07 45.56 0.41 2.58 15 28 H 0.15 1.50 8.06 -52.48 -0.42 1.08 15 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -33.96 274.33 -5.91 -39.87 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: -0.77 Total: -0.73 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -2.67 Total: -15.64 kcal Atomic # 7 Polarization: -27.40 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.88 Total: -13.48 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.96 -5.91 -39.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.592 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds