Wall clock time and date at job start Mon Mar 30 2020 07:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38572 * 120.00245 * 89.99907 * 11 10 9 13 13 O 1.36008 * 120.05022 * 0.02562 * 12 11 10 14 14 C 1.39122 * 119.89972 * 179.97438 * 12 11 10 15 15 O 1.36036 * 120.04385 * 180.02562 * 14 12 11 16 16 C 1.38554 * 119.91629 * 0.02562 * 14 12 11 17 17 C 1.38330 * 120.00807 * 359.97438 * 16 14 12 18 18 Cl 1.73601 * 119.94687 * 180.02562 * 17 16 14 19 19 C 1.38409 * 120.00663 * 269.72706 * 11 10 9 20 20 F 1.35097 * 119.95628 * 0.02562 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 0.96700 * 113.99958 * 90.00255 * 13 12 11 27 27 H 0.96701 * 114.00206 * 90.00169 * 15 14 12 28 28 H 1.08003 * 119.99502 * 179.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1447 -5.5676 -1.1986 13 8 1.4842 -4.9802 -2.3774 14 6 0.4496 -6.7727 -1.1955 15 8 0.1080 -7.3650 -2.3716 16 6 0.1056 -7.3690 0.0070 17 6 0.4537 -6.7664 1.2025 18 17 0.0225 -7.5152 2.7082 19 6 1.1509 -5.5692 1.2000 20 9 1.4938 -4.9857 2.3693 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 2.3473 -5.2524 -2.7182 27 1 0.7745 -7.9776 -2.7116 28 1 -0.4344 -8.3043 0.0108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963955.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:14 Heat of formation + Delta-G solvation = -149.351037 kcal Electronic energy + Delta-G solvation = -17045.813990 eV Core-core repulsion = 13808.268061 eV Total energy + Delta-G solvation = -3237.545929 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 260.040 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.05987 -41.37093 -38.24532 -38.16128 -37.07540 -35.75574 -33.78690 -30.60479 -29.95198 -27.16635 -24.21820 -23.78953 -22.16996 -19.88125 -19.21866 -18.61861 -18.49943 -17.86607 -16.95453 -16.49210 -16.39970 -15.94089 -15.16130 -15.08754 -14.86201 -14.40922 -14.21185 -13.85733 -13.54498 -13.17668 -12.81385 -12.72281 -12.59249 -12.22714 -12.04900 -11.85154 -11.62074 -11.47814 -11.15412 -10.57301 -9.79545 -9.53521 -8.20671 -6.33528 -0.31889 -0.16928 0.82302 1.39677 1.43746 1.51490 2.05994 2.40797 2.78481 2.99995 3.12372 3.17804 3.53433 3.94467 4.12919 4.44315 4.56082 4.68569 4.71771 4.78390 4.99455 5.05353 5.37785 5.45706 5.63801 5.79651 6.17819 6.60321 6.82360 6.89156 7.35932 8.91369 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023595 B = 0.005920 C = 0.005048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.392625 B = 4728.560066 C = 5545.242490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.041 3.959 10 C -0.058 4.058 11 C -0.121 4.121 12 C 0.114 3.886 13 O -0.486 6.486 14 C 0.098 3.902 15 O -0.483 6.483 16 C -0.094 4.094 17 C -0.068 4.068 18 Cl -0.039 7.039 19 C 0.095 3.905 20 F -0.133 7.133 21 H 0.264 0.736 22 H -0.020 1.020 23 H -0.009 1.009 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.411 0.589 27 H 0.415 0.585 28 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -18.745 -1.886 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.004 3.996 10 C -0.095 4.095 11 C -0.123 4.123 12 C 0.067 3.933 13 O -0.299 6.299 14 C 0.052 3.948 15 O -0.297 6.297 16 C -0.113 4.113 17 C -0.096 4.096 18 Cl -0.010 7.010 19 C 0.075 3.925 20 F -0.112 7.112 21 H 0.072 0.928 22 H -0.002 1.002 23 H 0.009 0.991 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.271 0.729 27 H 0.276 0.724 28 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.895 -18.090 -1.620 18.392 hybrid contribution 0.921 0.692 0.387 1.215 sum 3.816 -17.398 -1.233 17.854 Atomic orbital electron populations 1.70121 1.08058 1.27917 1.51393 1.26045 0.95750 1.03614 0.94530 0.85440 0.78207 0.77675 0.79357 1.18724 1.20951 1.19070 1.21617 0.93699 0.91862 1.50956 0.91511 1.18836 0.93900 0.92498 0.94343 1.20386 0.97436 0.89068 1.02609 1.20460 1.01928 0.98436 0.91500 1.18478 0.97706 0.91917 0.85155 1.84949 1.42325 1.68776 1.33853 1.18381 0.98366 0.91461 0.86626 1.84909 1.47736 1.62677 1.34351 1.21222 1.00355 1.01883 0.87853 1.20753 1.04070 0.94776 0.89977 1.98375 1.91626 1.80780 1.30261 1.17281 1.01141 0.92613 0.81507 1.91500 1.90225 1.83903 1.45567 0.92753 1.00176 0.99076 0.89669 0.91753 0.72894 0.72449 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.02 13.29 21.45 0.28 -58.74 15 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 15 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 7 C -0.54 -31.68 9.11 25.60 0.23 -31.45 15 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 15 9 C 0.04 2.29 4.95 29.85 0.15 2.44 15 10 C -0.06 -2.44 4.88 29.85 0.15 -2.29 15 11 C -0.12 -4.39 5.15 -19.74 -0.10 -4.49 15 12 C 0.11 3.47 6.69 22.56 0.15 3.63 15 13 O -0.49 -14.24 12.33 -79.71 -0.98 -15.23 15 14 C 0.10 2.39 6.72 22.56 0.15 2.54 15 15 O -0.48 -9.33 13.29 -80.03 -1.06 -10.39 15 16 C -0.09 -2.13 9.76 22.37 0.22 -1.92 15 17 C -0.07 -1.90 6.32 22.36 0.14 -1.76 15 18 Cl -0.04 -0.99 28.61 -2.72 -0.08 -1.07 15 19 C 0.09 3.30 7.21 22.38 0.16 3.46 15 20 F -0.13 -5.17 16.03 44.97 0.72 -4.45 15 21 H 0.26 15.62 8.31 -92.71 -0.77 14.85 15 22 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 15 23 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 15 24 H 0.08 3.26 7.53 -2.39 -0.02 3.24 15 25 H 0.06 2.69 7.63 -2.39 -0.02 2.68 15 26 H 0.41 6.87 9.06 -74.06 -0.67 6.20 15 27 H 0.42 2.87 9.07 -74.06 -0.67 2.20 15 28 H 0.18 2.87 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -75.20 274.33 2.51 -72.69 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -0.11 Total: -0.37 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: 1.71 Total: -29.47 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: 0.28 Total: -58.74 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -2.05 Total: -25.62 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.72 Total: -4.45 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -75.20 2.51 -72.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963955.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.661 kcal (2) G-P(sol) polarization free energy of solvation -75.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds