Wall clock time and date at job start Mon Mar 30 2020 06:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46809 * 2 1 4 4 C 1.50696 * 109.47407 * 239.99714 * 2 1 3 5 5 H 1.07999 * 120.00430 * 240.00167 * 4 2 1 6 6 C 1.37888 * 119.99917 * 59.99791 * 4 2 1 7 7 N 1.31511 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47400 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46886 * 120.00278 * 8 6 4 11 11 H 1.48501 * 109.47068 * 239.99691 * 8 6 4 12 12 C 1.53003 * 109.47270 * 119.99841 * 2 1 3 13 13 H 1.09001 * 110.27553 * 62.08847 * 12 2 1 14 14 C 1.54595 * 110.31000 * 184.28520 * 12 2 1 15 15 C 1.54940 * 102.91803 * 140.87055 * 14 12 2 16 16 N 1.48526 * 103.23098 * 322.58210 * 15 14 12 17 17 C 1.46901 * 111.00021 * 159.71703 * 16 15 14 18 18 C 1.50706 * 109.46600 * 52.61074 * 17 16 15 19 19 C 1.38234 * 120.00196 * 90.00059 * 18 17 16 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 17 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00076 * 0.02562 * 21 20 19 23 23 C 1.38235 * 119.99598 * 359.97438 * 22 21 20 24 24 C 1.47903 * 105.81778 * 39.20973 * 16 15 14 25 25 H 1.09001 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47165 * 300.00174 * 1 2 3 27 27 H 1.08996 * 109.46788 * 60.00444 * 1 2 3 28 28 H 0.97004 * 119.99407 * 180.02562 * 7 6 4 29 29 H 1.09001 * 110.72212 * 259.23068 * 14 12 2 30 30 H 1.09003 * 110.72461 * 22.33701 * 14 12 2 31 31 H 1.09004 * 110.66444 * 204.14838 * 15 14 12 32 32 H 1.08997 * 110.66557 * 81.02544 * 15 14 12 33 33 H 1.08998 * 109.47552 * 292.60952 * 17 16 15 34 34 H 1.08998 * 109.47006 * 172.60720 * 17 16 15 35 35 H 1.08000 * 119.99516 * 0.24808 * 19 18 17 36 36 H 1.08000 * 119.99318 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00391 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.00221 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.99789 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.91805 * 94.01719 * 24 16 15 41 41 H 1.08994 * 109.91761 * 215.11408 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 6 2.0401 -0.7212 1.2493 13 1 1.7147 -1.7615 1.2441 14 6 3.5820 -0.6394 1.3242 15 6 3.8443 -0.4216 2.8356 16 7 2.7310 0.4704 3.2488 17 6 2.5197 0.4105 4.7013 18 6 3.8245 0.6694 5.4097 19 6 4.1829 1.9609 5.7480 20 6 5.3795 2.1983 6.3982 21 6 6.2174 1.1442 6.7105 22 6 5.8590 -0.1474 6.3722 23 6 4.6624 -0.3848 5.7220 24 6 1.5374 -0.0103 2.5195 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1612 -3.4845 29 1 4.0347 -1.5709 0.9843 30 1 3.9524 0.2033 0.7403 31 1 4.8065 0.0660 2.9927 32 1 3.7992 -1.3682 3.3742 33 1 2.1480 -0.5771 4.9741 34 1 1.7912 1.1666 4.9940 35 1 3.5260 2.7839 5.5082 36 1 5.6596 3.2074 6.6621 37 1 7.1521 1.3296 7.2189 38 1 6.5138 -0.9710 6.6158 39 1 4.3826 -1.3938 5.4573 40 1 0.9796 -0.7108 3.1409 41 1 0.9024 0.8335 2.2497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:22 Heat of formation + Delta-G solvation = 18.294210 kcal Electronic energy + Delta-G solvation = -19195.892134 eV Core-core repulsion = 16460.893854 eV Total energy + Delta-G solvation = -2734.998280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65400 -38.19544 -34.68454 -32.55166 -30.95343 -30.71140 -29.50496 -27.04326 -25.47120 -24.73096 -22.63260 -21.61299 -21.18574 -20.14423 -18.65486 -16.80082 -16.37319 -15.54311 -15.44991 -15.11714 -14.70288 -14.21412 -13.61874 -13.42895 -13.14906 -12.94342 -12.71028 -12.37932 -12.05371 -11.71842 -11.52391 -11.39678 -11.03042 -10.96929 -10.89481 -10.69111 -10.57960 -10.36748 -10.08231 -10.02670 -9.54761 -9.01907 -8.92067 -8.75376 -8.65015 -8.26248 -7.99466 -5.91515 -3.96964 1.31763 1.38907 3.32751 3.40931 3.44365 3.72717 4.48593 4.52036 4.75638 4.84206 4.96240 5.07373 5.29625 5.36557 5.41475 5.47252 5.51562 5.63996 5.73805 5.78521 5.83508 5.99290 6.03727 6.10265 6.32566 6.42378 6.46702 6.47796 6.54930 6.64067 6.82552 6.88043 6.97420 7.01334 7.03220 7.23481 7.40624 7.45050 7.47262 7.81120 8.10520 8.22720 8.54061 9.07033 9.67326 11.14467 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035869 B = 0.004149 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.427393 B = 6747.080157 C = 7037.517372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.054 3.946 3 H 0.030 0.970 4 C -0.506 4.506 5 H 0.054 0.946 6 C 0.060 3.940 7 N -0.891 5.891 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.084 4.084 13 H 0.057 0.943 14 C -0.105 4.105 15 C 0.035 3.965 16 N -0.509 5.509 17 C 0.082 3.918 18 C -0.073 4.073 19 C -0.100 4.100 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.123 4.123 23 C -0.113 4.113 24 C 0.039 3.961 25 H 0.021 0.979 26 H 0.008 0.992 27 H 0.080 0.920 28 H 0.257 0.743 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.030 0.970 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -0.427 17.319 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.035 3.965 3 H 0.048 0.952 4 C -0.544 4.544 5 H 0.072 0.928 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.103 4.103 13 H 0.076 0.924 14 C -0.143 4.143 15 C -0.092 4.092 16 N -0.233 5.233 17 C -0.046 4.046 18 C -0.073 4.073 19 C -0.118 4.118 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.089 4.089 25 H 0.041 0.959 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.048 0.952 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.476 0.226 17.057 18.246 hybrid contribution 0.115 -1.343 -0.669 1.505 sum 6.591 -1.116 16.388 17.699 Atomic orbital electron populations 1.21862 0.99138 0.98655 0.99994 1.18709 0.92113 0.95665 0.89999 0.95219 1.21224 1.30558 1.12047 0.90606 0.92811 1.24957 0.95255 0.95018 0.98862 1.69905 1.37105 1.23052 1.22955 0.86623 0.78598 0.79742 0.83533 1.19903 1.21207 1.21140 1.22085 0.94232 0.98770 0.95225 0.92425 1.22423 0.96807 1.01861 0.93255 1.23284 0.94998 0.94005 0.96932 1.64928 1.05466 1.49818 1.03080 1.21264 0.93832 1.00425 0.89037 1.19844 0.96415 0.93462 0.97625 1.21062 0.96779 0.96384 0.97611 1.21139 0.94747 0.98927 0.99274 1.21109 0.99565 0.92983 1.00759 1.21089 0.96768 0.96910 0.99321 1.21100 0.94578 0.98743 0.98783 1.23138 0.91915 0.98822 0.94976 0.95939 0.97265 0.90092 0.93252 0.92127 0.90401 0.91018 0.94775 0.94235 0.90117 0.85876 0.86240 0.86430 0.86333 0.86432 0.95163 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.71 37.16 0.32 -3.03 16 2 C 0.05 1.33 1.62 -91.77 -0.15 1.18 16 3 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 4 C -0.51 -13.77 8.08 -34.44 -0.28 -14.04 16 5 H 0.05 1.45 7.62 -52.49 -0.40 1.05 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C -0.08 -1.73 2.52 -89.26 -0.22 -1.95 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.11 -2.01 5.98 -24.87 -0.15 -2.16 16 15 C 0.04 0.58 4.97 -1.90 -0.01 0.57 16 16 N -0.51 -8.44 5.39 -231.89 -1.25 -9.69 16 17 C 0.08 1.12 5.19 -4.97 -0.03 1.10 16 18 C -0.07 -0.94 4.59 -104.62 -0.48 -1.42 16 19 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 20 C -0.12 -1.32 10.05 -39.59 -0.40 -1.71 16 21 C -0.13 -1.29 10.05 -39.58 -0.40 -1.68 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 23 C -0.11 -1.35 8.35 -39.58 -0.33 -1.68 16 24 C 0.04 0.69 5.85 -2.75 -0.02 0.68 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.01 0.18 6.46 -51.93 -0.34 -0.15 16 27 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.08 1.64 7.84 -51.93 -0.41 1.23 16 31 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 32 H 0.03 0.51 7.09 -51.93 -0.37 0.15 16 33 H 0.04 0.52 7.75 -51.93 -0.40 0.12 16 34 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.31 7.39 -52.48 -0.39 0.92 16 40 H 0.03 0.50 7.57 -51.93 -0.39 0.11 16 41 H 0.08 1.59 6.29 -51.93 -0.33 1.26 16 LS Contribution 321.55 15.07 4.85 4.85 Total: -1.00 -28.74 321.55 -10.48 -39.22 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.67 Total: 0.19 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: -3.01 Total: -25.88 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.62 Total: -34.78 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.74 -10.48 -39.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.515 kcal (2) G-P(sol) polarization free energy of solvation -28.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds