Wall clock time and date at job start Mon Mar 30 2020 06:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46809 * 2 1 4 4 C 1.50696 * 109.47407 * 239.99714 * 2 1 3 5 5 H 1.07999 * 120.00430 * 240.00167 * 4 2 1 6 6 C 1.37888 * 119.99917 * 59.99791 * 4 2 1 7 7 N 1.31511 * 119.99586 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47400 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46886 * 120.00278 * 8 6 4 11 11 H 1.48501 * 109.47068 * 239.99691 * 8 6 4 12 12 C 1.53003 * 109.47270 * 119.99841 * 2 1 3 13 13 H 1.09001 * 110.27553 * 62.08847 * 12 2 1 14 14 C 1.54595 * 110.31000 * 184.28520 * 12 2 1 15 15 C 1.54940 * 102.91803 * 140.87055 * 14 12 2 16 16 N 1.48526 * 103.23098 * 322.58210 * 15 14 12 17 17 C 1.46901 * 111.00021 * 159.71703 * 16 15 14 18 18 C 1.50706 * 109.46600 * 52.61074 * 17 16 15 19 19 C 1.38234 * 120.00196 * 90.00059 * 18 17 16 20 20 C 1.38235 * 119.99814 * 179.97438 * 19 18 17 21 21 C 1.38230 * 120.00326 * 359.97438 * 20 19 18 22 22 C 1.38243 * 120.00076 * 0.02562 * 21 20 19 23 23 C 1.38235 * 119.99598 * 359.97438 * 22 21 20 24 24 C 1.47903 * 105.81778 * 39.20973 * 16 15 14 25 25 H 1.09001 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47165 * 300.00174 * 1 2 3 27 27 H 1.08996 * 109.46788 * 60.00444 * 1 2 3 28 28 H 0.97004 * 119.99407 * 180.02562 * 7 6 4 29 29 H 1.09001 * 110.72212 * 259.23068 * 14 12 2 30 30 H 1.09003 * 110.72461 * 22.33701 * 14 12 2 31 31 H 1.09004 * 110.66444 * 204.14838 * 15 14 12 32 32 H 1.08997 * 110.66557 * 81.02544 * 15 14 12 33 33 H 1.08998 * 109.47552 * 292.60952 * 17 16 15 34 34 H 1.08998 * 109.47006 * 172.60720 * 17 16 15 35 35 H 1.08000 * 119.99516 * 0.24808 * 19 18 17 36 36 H 1.08000 * 119.99318 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.00391 * 180.02562 * 21 20 19 38 38 H 1.07999 * 120.00221 * 179.97438 * 22 21 20 39 39 H 1.08005 * 119.99789 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.91805 * 94.01719 * 24 16 15 41 41 H 1.08994 * 109.91761 * 215.11408 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 3.1456 -2.2878 -3.6036 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1875 -4.8165 12 6 2.0401 -0.7212 1.2493 13 1 1.7147 -1.7615 1.2441 14 6 3.5820 -0.6394 1.3242 15 6 3.8443 -0.4216 2.8356 16 7 2.7310 0.4704 3.2488 17 6 2.5197 0.4105 4.7013 18 6 3.8245 0.6694 5.4097 19 6 4.1829 1.9609 5.7480 20 6 5.3795 2.1983 6.3982 21 6 6.2174 1.1442 6.7105 22 6 5.8590 -0.1474 6.3722 23 6 4.6624 -0.3848 5.7220 24 6 1.5374 -0.0103 2.5195 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7089 1.1612 -3.4845 29 1 4.0347 -1.5709 0.9843 30 1 3.9524 0.2033 0.7403 31 1 4.8065 0.0660 2.9927 32 1 3.7992 -1.3682 3.3742 33 1 2.1480 -0.5771 4.9741 34 1 1.7912 1.1666 4.9940 35 1 3.5260 2.7839 5.5082 36 1 5.6596 3.2074 6.6621 37 1 7.1521 1.3296 7.2189 38 1 6.5138 -0.9710 6.6158 39 1 4.3826 -1.3938 5.4573 40 1 0.9796 -0.7108 3.1409 41 1 0.9024 0.8335 2.2497 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279419.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:21 Heat of formation + Delta-G solvation = 3.191310 kcal Electronic energy + Delta-G solvation = -19196.547045 eV Core-core repulsion = 16460.893854 eV Total energy + Delta-G solvation = -2735.653191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.72824 -39.42589 -36.38163 -34.10994 -32.33886 -31.74122 -30.84757 -28.60035 -27.25055 -26.20462 -23.48808 -23.16604 -22.44341 -21.36526 -20.39260 -18.43729 -17.58670 -16.95982 -16.72144 -16.33463 -16.06135 -15.57564 -14.89290 -14.77269 -14.36095 -14.21415 -13.95728 -13.86434 -13.55514 -13.12349 -13.01395 -12.90658 -12.77345 -12.55222 -12.30975 -12.11422 -12.08730 -11.88457 -11.76039 -11.61913 -11.30356 -10.82256 -10.66258 -10.39110 -9.75830 -9.69225 -9.23006 -8.03997 -6.16454 0.46528 0.55803 1.40619 1.42752 1.53446 2.45835 2.83243 3.23799 3.31894 3.74512 3.94351 3.98642 4.11139 4.18116 4.22788 4.31713 4.39047 4.46921 4.64041 4.69130 4.70489 4.80476 4.82383 4.89595 4.97650 5.06263 5.10809 5.15320 5.21317 5.25628 5.35664 5.46396 5.54941 5.61602 5.66552 5.66950 5.75921 5.93410 6.12283 6.14687 6.19288 6.21519 6.44843 6.95871 7.51265 9.01082 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035869 B = 0.004149 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.427393 B = 6747.080157 C = 7037.517372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.054 3.946 3 H -0.008 1.008 4 C -0.519 4.519 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.949 3.051 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.284 1.284 12 C -0.082 4.082 13 H 0.058 0.942 14 C -0.105 4.105 15 C 0.052 3.948 16 N -0.523 5.523 17 C 0.085 3.915 18 C -0.091 4.091 19 C -0.116 4.116 20 C -0.129 4.129 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.124 4.124 24 C 0.048 3.952 25 H 0.025 0.975 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.258 0.742 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.124 0.876 40 H 0.050 0.950 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -1.466 18.836 20.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.036 3.964 3 H 0.010 0.990 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.210 1.210 12 C -0.101 4.101 13 H 0.077 0.923 14 C -0.143 4.143 15 C -0.076 4.076 16 N -0.248 5.248 17 C -0.042 4.042 18 C -0.091 4.091 19 C -0.135 4.135 20 C -0.147 4.147 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.142 4.142 24 C -0.080 4.080 25 H 0.044 0.956 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.161 0.839 38 H 0.158 0.842 39 H 0.142 0.858 40 H 0.068 0.932 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.704 -0.818 18.588 20.138 hybrid contribution -0.231 -0.973 -1.090 1.479 sum 7.474 -1.791 17.498 19.112 Atomic orbital electron populations 1.21708 0.98739 0.98627 0.99632 1.18620 0.92440 0.93800 0.91573 0.99017 1.21563 1.30344 1.12033 0.91781 0.92894 1.25730 0.95554 0.95763 1.01863 1.70046 1.38170 1.24357 1.23520 0.85634 0.78111 0.78776 0.79902 1.19043 1.20822 1.20970 1.21944 0.95257 0.98358 0.94521 0.92312 1.22350 0.95738 1.00943 0.95297 1.23125 0.94998 0.94861 0.94599 1.64861 1.04796 1.50078 1.05031 1.21274 0.94832 1.01080 0.87026 1.19835 0.96409 0.94159 0.98692 1.21221 0.97638 0.96299 0.98318 1.21430 0.94254 1.00270 0.98717 1.21476 1.00297 0.92667 1.00084 1.21407 0.96569 0.97923 0.98604 1.21250 0.95031 0.98766 0.99163 1.22928 0.92468 0.98314 0.94258 0.95597 0.94954 0.93112 0.93306 0.91548 0.93243 0.90767 0.92883 0.93358 0.89681 0.85904 0.84330 0.83929 0.84163 0.85849 0.93177 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.34 8.71 71.98 0.63 -5.71 16 2 C 0.05 2.75 1.62 -11.54 -0.02 2.73 16 3 H -0.01 -0.48 8.11 -2.39 -0.02 -0.50 16 4 C -0.52 -28.64 8.08 25.60 0.21 -28.43 16 5 H 0.05 2.86 7.62 -2.91 -0.02 2.84 16 6 C 0.01 0.49 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 C -0.08 -3.34 2.52 -9.91 -0.02 -3.37 16 13 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.11 -4.00 5.98 31.80 0.19 -3.81 16 15 C 0.05 1.60 4.97 86.65 0.43 2.03 16 16 N -0.52 -16.81 5.39 -887.56 -4.78 -21.59 16 17 C 0.09 2.19 5.19 85.56 0.44 2.64 16 18 C -0.09 -2.18 4.59 -19.86 -0.09 -2.27 16 19 C -0.12 -2.66 9.70 22.27 0.22 -2.44 16 20 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.12 -2.66 8.35 22.27 0.19 -2.47 16 24 C 0.05 1.68 5.85 86.45 0.51 2.18 16 25 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.03 1.38 6.46 -2.39 -0.02 1.37 16 27 H 0.05 2.79 6.07 -2.39 -0.01 2.78 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 2.14 7.84 -2.39 -0.02 2.12 16 31 H 0.07 2.28 7.74 -2.38 -0.02 2.27 16 32 H 0.05 1.46 7.09 -2.39 -0.02 1.44 16 33 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 34 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 35 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.12 2.43 7.39 -2.91 -0.02 2.41 16 40 H 0.05 1.55 7.57 -2.39 -0.02 1.54 16 41 H 0.07 2.57 6.29 -2.39 -0.02 2.56 16 Total: -1.00 -61.97 321.55 2.26 -59.71 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.98 Total: 14.13 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 3.79 Total: -44.38 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -4.54 Total: -75.75 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -61.97 2.26 -59.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279419.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.900 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds