Wall clock time and date at job start Mon Mar 30 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 13 13 H 1.08995 * 110.62562 * 303.10347 * 12 2 1 14 14 C 1.55136 * 110.70711 * 66.39668 * 12 2 1 15 15 C 1.54910 * 101.65215 * 154.03467 * 14 12 2 16 16 N 1.47847 * 104.79734 * 322.93492 * 15 14 12 17 17 C 1.46896 * 111.00091 * 146.36292 * 16 15 14 18 18 C 1.50701 * 109.47351 * 69.15412 * 17 16 15 19 19 C 1.38234 * 119.99923 * 269.72674 * 18 17 16 20 20 C 1.38239 * 119.99786 * 179.78461 * 19 18 17 21 21 C 1.38233 * 120.00178 * 0.46899 * 20 19 18 22 22 C 1.38233 * 119.99840 * 359.76138 * 21 20 19 23 23 C 1.38236 * 119.99910 * 89.99983 * 18 17 16 24 24 C 1.47441 * 108.56700 * 24.09086 * 16 15 14 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.99330 * 272.12735 * 14 12 2 30 30 H 1.09002 * 110.98670 * 35.94857 * 14 12 2 31 31 H 1.09003 * 110.37649 * 204.10003 * 15 14 12 32 32 H 1.09003 * 110.37180 * 81.76248 * 15 14 12 33 33 H 1.09001 * 109.47312 * 189.15396 * 17 16 15 34 34 H 1.08999 * 109.47125 * 309.15248 * 17 16 15 35 35 H 1.08003 * 120.00499 * 0.02562 * 19 18 17 36 36 H 1.08006 * 119.99561 * 180.25333 * 20 19 18 37 37 H 1.07996 * 119.99820 * 179.78819 * 21 20 19 38 38 H 1.07994 * 120.00216 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.99901 * 359.97438 * 23 18 17 40 40 H 1.09004 * 109.88794 * 239.60839 * 24 16 15 41 41 H 1.09002 * 110.02348 * 118.49694 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2494 13 1 1.6427 -1.7350 -1.2965 14 6 1.6750 0.0751 -2.5298 15 6 2.7827 -0.3845 -3.5104 16 7 3.9961 -0.5139 -2.6756 17 6 4.8498 -1.6094 -3.1541 18 6 5.4496 -1.2344 -4.4848 19 6 4.7883 -1.5545 -5.6558 20 6 5.3363 -1.2066 -6.8763 21 6 6.5502 -0.5472 -6.9262 22 6 7.2137 -0.2313 -5.7554 23 6 6.6637 -0.5753 -4.5347 24 6 3.5828 -0.7378 -1.2781 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 0.6878 -0.2060 -2.8963 30 1 1.7325 1.1489 -2.3514 31 1 2.9352 0.3637 -4.2883 32 1 2.5224 -1.3459 -3.9532 33 1 5.6479 -1.7893 -2.4338 34 1 4.2516 -2.5135 -3.2670 35 1 3.8416 -2.0730 -5.6170 36 1 4.8176 -1.4532 -7.7910 37 1 6.9798 -0.2785 -7.8799 38 1 8.1619 0.2842 -5.7943 39 1 7.1822 -0.3288 -3.6200 40 1 3.9741 0.0576 -0.6438 41 1 3.9499 -1.7035 -0.9305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261279421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:27 Heat of formation + Delta-G solvation = 15.351747 kcal Electronic energy + Delta-G solvation = -19129.414530 eV Core-core repulsion = 16394.288655 eV Total energy + Delta-G solvation = -2735.125875 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.55705 -38.22873 -34.66605 -32.58143 -30.91660 -30.78771 -29.22707 -27.46560 -25.14030 -24.89071 -22.59708 -21.38844 -21.28068 -20.16539 -18.92064 -16.82175 -16.19433 -15.58011 -15.36392 -15.07111 -14.69441 -14.21024 -13.64496 -13.35973 -13.09247 -12.95027 -12.76548 -12.34679 -12.13084 -11.72515 -11.50693 -11.35446 -11.18077 -10.92583 -10.89322 -10.75418 -10.57898 -10.42585 -10.20286 -9.93912 -9.68369 -9.08005 -8.90445 -8.71815 -8.68210 -8.29288 -7.86497 -5.94498 -4.00661 1.35684 1.41495 3.31903 3.38847 3.41408 3.75557 4.46064 4.53665 4.82241 4.88217 4.98950 5.10104 5.30167 5.34023 5.36151 5.49523 5.51728 5.66702 5.70434 5.79070 5.89969 6.02813 6.04260 6.08118 6.33304 6.44140 6.45995 6.49436 6.54025 6.68405 6.78731 6.80824 6.98286 6.99990 7.01375 7.29579 7.40978 7.43445 7.50679 7.77392 8.04813 8.19000 8.49693 9.02854 9.64050 11.11284 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.004217 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.945368 B = 6638.167986 C = 7148.752394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.055 3.945 3 H 0.028 0.972 4 C -0.509 4.509 5 H 0.053 0.947 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.887 3.113 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.276 1.276 12 C -0.092 4.092 13 H 0.057 0.943 14 C -0.126 4.126 15 C 0.045 3.955 16 N -0.527 5.527 17 C 0.086 3.914 18 C -0.067 4.067 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.123 4.123 23 C -0.100 4.100 24 C 0.057 3.943 25 H 0.080 0.920 26 H 0.021 0.979 27 H 0.007 0.993 28 H 0.259 0.741 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.086 0.914 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.013 -3.479 -16.035 18.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.036 3.964 3 H 0.046 0.954 4 C -0.548 4.548 5 H 0.071 0.929 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.111 4.111 13 H 0.075 0.925 14 C -0.164 4.164 15 C -0.082 4.082 16 N -0.251 5.251 17 C -0.042 4.042 18 C -0.067 4.067 19 C -0.133 4.133 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.119 4.119 24 C -0.069 4.069 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.230 -2.923 -15.903 18.143 hybrid contribution -0.177 -1.232 0.920 1.548 sum 8.053 -4.155 -14.983 17.510 Atomic orbital electron populations 1.21795 0.98940 0.98651 0.99975 1.18648 0.92308 0.95491 0.89955 0.95388 1.21188 1.30781 1.12162 0.90641 0.92857 1.24953 0.95151 0.95002 0.98876 1.69888 1.36911 1.23020 1.23142 0.86676 0.78612 0.80076 0.83104 1.20737 1.21350 1.20064 1.22438 0.93892 0.98728 0.96056 0.92470 1.22795 0.96848 1.01058 0.95657 1.23034 0.89766 0.99215 0.96226 1.63702 1.17009 1.41021 1.03380 1.21248 0.97137 0.92592 0.93215 1.19866 0.94615 0.97524 0.94702 1.21082 0.99554 1.00463 0.92193 1.21083 0.96121 0.99375 0.97549 1.21089 0.95728 0.99683 0.98107 1.21131 0.99994 1.00362 0.92624 1.21060 0.95459 0.97557 0.97827 1.22838 0.96031 1.00874 0.87173 0.90102 0.95942 0.97397 0.93138 0.91863 0.90999 0.91346 0.94502 0.90167 0.94166 0.86485 0.86419 0.86510 0.86319 0.85962 0.89602 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.82 37.16 0.33 -2.94 16 2 C 0.05 1.34 1.69 -91.77 -0.16 1.18 16 3 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 4 C -0.51 -13.68 7.99 -34.44 -0.28 -13.96 16 5 H 0.05 1.41 7.47 -52.49 -0.39 1.02 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C -0.09 -1.86 2.45 -88.80 -0.22 -2.08 16 13 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.13 -2.21 5.68 -24.59 -0.14 -2.34 16 15 C 0.05 0.71 5.62 -2.30 -0.01 0.69 16 16 N -0.53 -8.73 5.15 -232.69 -1.20 -9.93 16 17 C 0.09 1.22 4.73 -4.98 -0.02 1.20 16 18 C -0.07 -0.87 5.09 -104.62 -0.53 -1.40 16 19 C -0.11 -1.37 8.93 -39.58 -0.35 -1.72 16 20 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.10 -1.24 9.70 -39.58 -0.38 -1.62 16 24 C 0.06 1.09 5.62 -2.84 -0.02 1.08 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.01 0.15 7.48 -51.93 -0.39 -0.23 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 30 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.54 7.01 -51.93 -0.36 0.17 16 33 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 34 H 0.04 0.56 7.79 -51.93 -0.40 0.15 16 35 H 0.12 1.30 7.50 -52.48 -0.39 0.91 16 36 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.09 1.82 7.77 -51.93 -0.40 1.41 16 41 H 0.05 0.86 7.56 -51.93 -0.39 0.46 16 LS Contribution 324.93 15.07 4.90 4.90 Total: -1.00 -28.29 324.93 -10.59 -38.88 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.82 Total: 0.29 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -3.07 Total: -25.49 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.57 Total: -34.80 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.29 -10.59 -38.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.231 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds