Wall clock time and date at job start Mon Mar 30 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48499 * 109.47102 * 210.00327 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 13 13 H 1.08995 * 110.62562 * 303.10347 * 12 2 1 14 14 C 1.55136 * 110.70711 * 66.39668 * 12 2 1 15 15 C 1.54910 * 101.65215 * 154.03467 * 14 12 2 16 16 N 1.47847 * 104.79734 * 322.93492 * 15 14 12 17 17 C 1.46896 * 111.00091 * 146.36292 * 16 15 14 18 18 C 1.50701 * 109.47351 * 69.15412 * 17 16 15 19 19 C 1.38234 * 119.99923 * 269.72674 * 18 17 16 20 20 C 1.38239 * 119.99786 * 179.78461 * 19 18 17 21 21 C 1.38233 * 120.00178 * 0.46899 * 20 19 18 22 22 C 1.38233 * 119.99840 * 359.76138 * 21 20 19 23 23 C 1.38236 * 119.99910 * 89.99983 * 18 17 16 24 24 C 1.47441 * 108.56700 * 24.09086 * 16 15 14 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 29 29 H 1.08997 * 110.99330 * 272.12735 * 14 12 2 30 30 H 1.09002 * 110.98670 * 35.94857 * 14 12 2 31 31 H 1.09003 * 110.37649 * 204.10003 * 15 14 12 32 32 H 1.09003 * 110.37180 * 81.76248 * 15 14 12 33 33 H 1.09001 * 109.47312 * 189.15396 * 17 16 15 34 34 H 1.08999 * 109.47125 * 309.15248 * 17 16 15 35 35 H 1.08003 * 120.00499 * 0.02562 * 19 18 17 36 36 H 1.08006 * 119.99561 * 180.25333 * 20 19 18 37 37 H 1.07996 * 119.99820 * 179.78819 * 21 20 19 38 38 H 1.07994 * 120.00216 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.99901 * 359.97438 * 23 18 17 40 40 H 1.09004 * 109.88794 * 239.60839 * 24 16 15 41 41 H 1.09002 * 110.02348 * 118.49694 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3432 -0.9495 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2494 13 1 1.6427 -1.7350 -1.2965 14 6 1.6750 0.0751 -2.5298 15 6 2.7827 -0.3845 -3.5104 16 7 3.9961 -0.5139 -2.6756 17 6 4.8498 -1.6094 -3.1541 18 6 5.4496 -1.2344 -4.4848 19 6 4.7883 -1.5545 -5.6558 20 6 5.3363 -1.2066 -6.8763 21 6 6.5502 -0.5472 -6.9262 22 6 7.2137 -0.2313 -5.7554 23 6 6.6637 -0.5753 -4.5347 24 6 3.5828 -0.7378 -1.2781 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 0.7096 1.1617 3.4844 29 1 0.6878 -0.2060 -2.8963 30 1 1.7325 1.1489 -2.3514 31 1 2.9352 0.3637 -4.2883 32 1 2.5224 -1.3459 -3.9532 33 1 5.6479 -1.7893 -2.4338 34 1 4.2516 -2.5135 -3.2670 35 1 3.8416 -2.0730 -5.6170 36 1 4.8176 -1.4532 -7.7910 37 1 6.9798 -0.2785 -7.8799 38 1 8.1619 0.2842 -5.7943 39 1 7.1822 -0.3288 -3.6200 40 1 3.9741 0.0576 -0.6438 41 1 3.9499 -1.7035 -0.9305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261279421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:27 Heat of formation + Delta-G solvation = 1.000345 kcal Electronic energy + Delta-G solvation = -19130.036853 eV Core-core repulsion = 16394.288655 eV Total energy + Delta-G solvation = -2735.748198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65150 -39.45176 -36.38274 -34.12206 -32.35060 -31.72900 -30.59395 -29.02554 -27.08917 -26.18604 -23.51490 -23.01809 -22.37909 -21.41906 -20.66606 -18.29644 -17.63440 -16.85938 -16.76630 -16.26509 -16.03320 -15.53743 -15.01737 -14.71812 -14.31403 -14.22970 -14.01352 -13.72043 -13.54415 -13.17616 -13.11712 -12.88216 -12.80772 -12.63269 -12.26767 -12.20160 -12.14634 -11.85041 -11.71046 -11.56500 -11.42857 -10.89545 -10.65877 -10.40178 -9.74929 -9.64298 -9.17264 -8.05050 -6.17807 0.48906 0.57221 1.41346 1.42422 1.51635 2.45028 2.83465 3.22178 3.32607 3.78724 3.94556 3.97485 4.05982 4.18055 4.23567 4.33210 4.41282 4.47215 4.62697 4.69024 4.70999 4.80466 4.83316 4.89641 5.01138 5.08052 5.12294 5.17453 5.19517 5.22647 5.29452 5.45269 5.54716 5.62214 5.64752 5.67727 5.77989 5.98906 6.09881 6.14506 6.19233 6.24561 6.42683 6.93798 7.50144 8.99693 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.034308 B = 0.004217 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.945368 B = 6638.167986 C = 7148.752394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.054 3.946 3 H -0.006 1.006 4 C -0.521 4.521 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.948 3.052 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C -0.089 4.089 13 H 0.057 0.943 14 C -0.120 4.120 15 C 0.055 3.945 16 N -0.534 5.534 17 C 0.089 3.911 18 C -0.084 4.084 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.118 4.118 24 C 0.067 3.933 25 H 0.051 0.949 26 H 0.024 0.976 27 H 0.030 0.970 28 H 0.258 0.742 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.719 -4.430 -18.009 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.035 3.965 3 H 0.012 0.988 4 C -0.560 4.560 5 H 0.071 0.929 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.108 4.108 13 H 0.076 0.924 14 C -0.158 4.158 15 C -0.072 4.072 16 N -0.258 5.258 17 C -0.039 4.039 18 C -0.085 4.085 19 C -0.142 4.142 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.136 4.136 24 C -0.060 4.060 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.944 -3.883 -17.892 20.376 hybrid contribution -0.361 -0.906 1.466 1.760 sum 8.583 -4.789 -16.426 19.142 Atomic orbital electron populations 1.21644 0.98590 0.98586 0.99625 1.18574 0.92586 0.93831 0.91459 0.98825 1.21531 1.30495 1.12136 0.91792 0.92913 1.25710 0.95468 0.95743 1.01816 1.70027 1.38022 1.24316 1.23646 0.85705 0.78020 0.79252 0.79581 1.20361 1.21152 1.19266 1.22277 0.94685 0.98450 0.95423 0.92437 1.22738 0.98558 0.99799 0.94734 1.22987 0.88398 1.00261 0.95583 1.63634 1.17621 1.42476 1.02106 1.21241 0.96686 0.91882 0.94077 1.19807 0.95329 0.99018 0.94324 1.21235 0.99933 1.00708 0.92364 1.21411 0.96334 0.98722 0.97949 1.21468 0.95454 0.98638 0.99038 1.21419 1.00814 1.00108 0.92276 1.21201 0.95629 0.98130 0.98650 1.22568 0.95073 0.99702 0.88661 0.93045 0.95676 0.95108 0.93243 0.90240 0.92361 0.90426 0.92789 0.90322 0.93727 0.85823 0.84075 0.83875 0.84351 0.86166 0.92586 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.15 8.82 71.98 0.63 -5.52 16 2 C 0.05 2.72 1.69 -11.54 -0.02 2.70 16 3 H -0.01 -0.36 8.10 -2.39 -0.02 -0.38 16 4 C -0.52 -28.47 7.99 25.60 0.20 -28.26 16 5 H 0.05 2.82 7.47 -2.91 -0.02 2.80 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 C -0.09 -3.60 2.45 -9.61 -0.02 -3.62 16 13 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.12 -4.10 5.68 31.98 0.18 -3.92 16 15 C 0.05 1.62 5.62 86.77 0.49 2.11 16 16 N -0.53 -17.36 5.15 -890.08 -4.59 -21.94 16 17 C 0.09 2.43 4.73 85.56 0.40 2.84 16 18 C -0.08 -2.09 5.09 -19.87 -0.10 -2.19 16 19 C -0.12 -2.69 8.93 22.27 0.20 -2.49 16 20 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 22 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 23 C -0.12 -2.75 9.70 22.27 0.22 -2.54 16 24 C 0.07 2.59 5.62 86.65 0.49 3.08 16 25 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 26 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.03 1.30 7.48 -2.38 -0.02 1.28 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 30 H 0.06 2.14 8.02 -2.39 -0.02 2.12 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.05 1.42 7.01 -2.39 -0.02 1.41 16 33 H 0.08 2.13 7.98 -2.39 -0.02 2.11 16 34 H 0.04 1.18 7.79 -2.39 -0.02 1.16 16 35 H 0.12 2.44 7.50 -2.91 -0.02 2.42 16 36 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.12 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.06 2.47 7.77 -2.38 -0.02 2.45 16 41 H 0.05 1.75 7.56 -2.39 -0.02 1.74 16 Total: -1.00 -60.94 324.93 2.45 -58.50 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.97 Total: 14.25 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 3.79 Total: -43.14 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -4.34 Total: -75.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.94 2.45 -58.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261279421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.498 kcal (2) G-P(sol) polarization free energy of solvation -60.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds