Wall clock time and date at job start Mon Mar 30 2020 06:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48497 * 109.47042 * 149.99893 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 11 11 F 1.39905 * 109.47157 * 59.99916 * 9 7 2 12 12 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 13 13 S 1.81404 * 109.47118 * 179.97438 * 12 9 7 14 14 C 1.76203 * 103.00050 * 180.02562 * 13 12 9 15 15 C 1.38965 * 120.06596 * 359.72189 * 14 13 12 16 16 C 1.38082 * 119.93039 * 179.79322 * 15 14 13 17 17 C 1.38396 * 120.06791 * 0.48769 * 16 15 14 18 18 Cl 1.73600 * 119.93539 * 179.72472 * 17 16 15 19 19 C 1.38398 * 120.13619 * 359.74420 * 17 16 15 20 20 C 1.38087 * 120.06258 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47375 * 299.99958 * 12 9 7 23 23 H 1.09002 * 109.47045 * 60.00033 * 12 9 7 24 24 H 1.08005 * 120.03189 * 0.02562 * 15 14 13 25 25 H 1.07997 * 119.96714 * 180.20853 * 16 15 14 26 26 H 1.08001 * 119.96881 * 180.02562 * 19 17 16 27 27 H 1.08008 * 120.03457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8889 11 9 3.9774 -0.5343 1.1435 12 6 4.0215 -2.6366 0.0023 13 16 5.8355 -2.6366 0.0022 14 6 6.2318 -4.3535 0.0028 15 6 5.2166 -5.3024 0.0091 16 6 5.5304 -6.6471 0.0052 17 6 6.8543 -7.0502 0.0054 18 17 7.2449 -8.7417 0.0078 19 6 7.8677 -6.1076 0.0040 20 6 7.5602 -4.7614 0.0031 21 1 -0.4850 0.8401 -0.0004 22 1 3.6578 -3.1499 0.8925 23 1 3.6584 -3.1510 -0.8875 24 1 4.1832 -4.9884 0.0131 25 1 4.7418 -7.3850 0.0067 26 1 8.8999 -6.4252 0.0037 27 1 8.3513 -4.0261 0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261338099.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:48 Heat of formation + Delta-G solvation = -37.185336 kcal Electronic energy + Delta-G solvation = -14209.512275 eV Core-core repulsion = 11419.583086 eV Total energy + Delta-G solvation = -2789.929188 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -46.37768 -39.16489 -36.55184 -33.27127 -31.64349 -30.95133 -30.68972 -26.00467 -22.99820 -22.84573 -20.92906 -17.88543 -17.43853 -16.47524 -15.56590 -15.48042 -15.01880 -14.68063 -13.93948 -13.77630 -13.70584 -13.47107 -13.00288 -12.57451 -12.38728 -11.92642 -11.74285 -11.62798 -11.13683 -10.96785 -10.57792 -10.43086 -9.97544 -9.49590 -9.39829 -9.22114 -9.18794 -8.82092 -7.24791 -6.34565 -4.49733 0.92292 1.14958 1.65619 2.03787 2.65319 3.21920 3.32060 3.43582 3.45993 4.28080 4.62987 4.72278 4.98851 5.13679 5.23721 5.39230 5.41113 5.49148 5.76462 5.81842 5.92039 6.08900 6.13395 6.36990 6.56267 6.99689 7.17192 8.11746 8.61164 9.23196 10.75720 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.050922 B = 0.004191 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.733967 B = 6679.673927 C = 7141.452943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.089 3.911 3 Si 0.866 3.134 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.563 4.563 8 H 0.085 0.915 9 C 0.201 3.799 10 H 0.047 0.953 11 F -0.231 7.231 12 C -0.110 4.110 13 S -0.115 6.115 14 C -0.070 4.070 15 C -0.124 4.124 16 C -0.087 4.087 17 C -0.051 4.051 18 Cl -0.078 7.078 19 C -0.092 4.092 20 C -0.096 4.096 21 H 0.270 0.730 22 H 0.094 0.906 23 H 0.099 0.901 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.841 -11.861 -0.979 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.601 4.601 8 H 0.104 0.896 9 C 0.163 3.837 10 H 0.065 0.935 11 F -0.212 7.212 12 C -0.258 4.258 13 S 0.133 5.867 14 C -0.184 4.184 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.080 4.080 18 Cl -0.050 7.050 19 C -0.113 4.113 20 C -0.120 4.120 21 H 0.080 0.920 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.156 0.844 25 H 0.153 0.847 26 H 0.153 0.847 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.382 -10.785 -0.939 18.001 hybrid contribution -0.592 -0.461 0.028 0.750 sum 13.790 -11.246 -0.911 17.817 Atomic orbital electron populations 1.69886 1.06427 1.27881 1.47258 1.24935 0.94865 0.99632 0.92322 0.87135 0.82321 0.82582 0.78900 1.20287 1.20960 1.15984 1.21094 0.87284 0.95862 1.55910 0.89647 1.19239 0.95830 0.85290 0.83342 0.93532 1.92772 1.90591 1.82494 1.55331 1.24533 0.90226 1.04660 1.06427 1.85720 1.10216 1.00317 1.90416 1.22086 0.96448 0.98224 1.01656 1.21304 0.99434 0.92094 1.02062 1.20950 0.94682 0.96053 0.99111 1.20850 0.94652 0.84704 1.07835 1.98355 1.94482 1.15015 1.97110 1.20925 0.98795 0.91736 0.99821 1.20726 0.94702 0.95240 1.01361 0.91986 0.88733 0.88233 0.84432 0.84737 0.84730 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.77 13.96 55.43 0.77 -25.00 15 2 C 0.09 2.48 5.47 -17.82 -0.10 2.39 15 3 Si 0.87 20.89 27.07 -169.99 -4.60 16.29 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.24 -5.67 5.49 56.52 0.31 -5.36 15 7 C -0.56 -15.10 9.44 -34.44 -0.32 -15.43 15 8 H 0.09 2.40 7.99 -52.49 -0.42 1.98 15 9 C 0.20 4.60 2.65 -27.88 -0.07 4.53 15 10 H 0.05 1.05 7.57 -51.93 -0.39 0.65 15 11 F -0.23 -5.62 13.90 2.25 0.03 -5.59 15 12 C -0.11 -2.04 4.05 37.16 0.15 -1.89 15 13 S -0.11 -1.91 21.66 -107.50 -2.33 -4.23 15 14 C -0.07 -1.00 6.11 -39.05 -0.24 -1.24 15 15 C -0.12 -1.67 9.36 -39.37 -0.37 -2.04 15 16 C -0.09 -1.04 9.82 -39.58 -0.39 -1.43 15 17 C -0.05 -0.58 6.32 -39.46 -0.25 -0.83 15 18 Cl -0.08 -0.81 28.95 -51.86 -1.50 -2.31 15 19 C -0.09 -1.01 9.82 -39.58 -0.39 -1.40 15 20 C -0.10 -1.17 9.79 -39.37 -0.39 -1.55 15 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.09 1.73 7.74 -51.92 -0.40 1.33 15 23 H 0.10 1.70 7.76 -51.92 -0.40 1.30 15 24 H 0.14 1.82 5.88 -52.48 -0.31 1.51 15 25 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 26 H 0.13 1.16 8.06 -52.49 -0.42 0.73 15 27 H 0.14 1.44 8.06 -52.48 -0.42 1.02 15 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -28.67 267.50 -8.38 -37.05 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.42 Total: -1.35 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -2.37 Total: -18.90 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.77 Total: -25.00 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.03 Total: -5.59 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.60 Total: 16.29 kcal Atomic # 16 Polarization: -1.91 SS G_CDS: -2.33 Total: -4.23 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -28.67 -8.38 -37.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261338099.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.132 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds