Wall clock time and date at job start Mon Mar 30 2020 06:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48503 * 109.46782 * 269.99532 * 3 2 1 5 5 H 1.48495 * 109.46891 * 29.99921 * 3 2 1 6 6 H 1.48497 * 109.47042 * 149.99893 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 11 11 F 1.39905 * 109.47157 * 59.99916 * 9 7 2 12 12 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 13 13 S 1.81404 * 109.47118 * 179.97438 * 12 9 7 14 14 C 1.76203 * 103.00050 * 180.02562 * 13 12 9 15 15 C 1.38965 * 120.06596 * 359.72189 * 14 13 12 16 16 C 1.38082 * 119.93039 * 179.79322 * 15 14 13 17 17 C 1.38396 * 120.06791 * 0.48769 * 16 15 14 18 18 Cl 1.73600 * 119.93539 * 179.72472 * 17 16 15 19 19 C 1.38398 * 120.13619 * 359.74420 * 17 16 15 20 20 C 1.38087 * 120.06258 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99684 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47375 * 299.99958 * 12 9 7 23 23 H 1.09002 * 109.47045 * 60.00033 * 12 9 7 24 24 H 1.08005 * 120.03189 * 0.02562 * 15 14 13 25 25 H 1.07997 * 119.96714 * 180.20853 * 16 15 14 26 26 H 1.08001 * 119.96881 * 180.02562 * 19 17 16 27 27 H 1.08008 * 120.03457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8889 11 9 3.9774 -0.5343 1.1435 12 6 4.0215 -2.6366 0.0023 13 16 5.8355 -2.6366 0.0022 14 6 6.2318 -4.3535 0.0028 15 6 5.2166 -5.3024 0.0091 16 6 5.5304 -6.6471 0.0052 17 6 6.8543 -7.0502 0.0054 18 17 7.2449 -8.7417 0.0078 19 6 7.8677 -6.1076 0.0040 20 6 7.5602 -4.7614 0.0031 21 1 -0.4850 0.8401 -0.0004 22 1 3.6578 -3.1499 0.8925 23 1 3.6584 -3.1510 -0.8875 24 1 4.1832 -4.9884 0.0131 25 1 4.7418 -7.3850 0.0067 26 1 8.8999 -6.4252 0.0037 27 1 8.3513 -4.0261 0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261338099.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:47 Heat of formation + Delta-G solvation = -51.671508 kcal Electronic energy + Delta-G solvation = -14210.140442 eV Core-core repulsion = 11419.583086 eV Total energy + Delta-G solvation = -2790.557356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.013 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.28059 -40.11302 -37.42651 -35.27880 -33.20658 -32.06090 -31.77110 -27.89528 -24.11029 -23.81538 -22.63120 -19.46239 -18.91689 -17.55491 -17.35337 -16.87622 -16.54442 -15.86544 -15.53442 -15.04759 -14.86696 -14.71003 -14.54520 -14.37962 -13.92897 -13.08583 -13.03652 -12.74375 -12.69069 -12.41606 -12.20341 -11.84144 -11.42823 -11.29037 -11.06533 -10.90078 -10.50711 -10.14984 -8.47963 -8.45476 -6.67051 -0.05715 0.21539 0.40457 1.11501 1.31496 1.36568 1.37604 1.54200 2.27400 2.48078 2.88800 3.70670 3.73676 3.83634 3.97374 4.09119 4.20747 4.32117 4.49018 4.73864 4.87892 4.96861 5.06308 5.15175 5.17910 5.27393 5.62995 6.00228 6.44503 7.09173 8.65724 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.050922 B = 0.004191 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.733967 B = 6679.673927 C = 7141.452943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.034 3.966 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.233 1.233 7 C -0.569 4.569 8 H 0.058 0.942 9 C 0.199 3.801 10 H 0.056 0.944 11 F -0.237 7.237 12 C -0.104 4.104 13 S -0.122 6.122 14 C -0.087 4.087 15 C -0.135 4.135 16 C -0.091 4.091 17 C -0.051 4.051 18 Cl -0.065 7.065 19 C -0.086 4.086 20 C -0.094 4.094 21 H 0.274 0.726 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.132 0.868 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.114 -12.560 -1.186 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.207 1.207 6 H -0.155 1.155 7 C -0.608 4.608 8 H 0.076 0.924 9 C 0.161 3.839 10 H 0.074 0.926 11 F -0.219 7.219 12 C -0.252 4.252 13 S 0.125 5.875 14 C -0.201 4.201 15 C -0.159 4.159 16 C -0.111 4.111 17 C -0.081 4.081 18 Cl -0.036 7.036 19 C -0.107 4.107 20 C -0.118 4.118 21 H 0.083 0.917 22 H 0.109 0.891 23 H 0.127 0.873 24 H 0.150 0.850 25 H 0.168 0.832 26 H 0.181 0.819 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 16.663 -11.513 -1.152 20.286 hybrid contribution -1.250 -0.450 0.100 1.332 sum 15.413 -11.963 -1.052 19.539 Atomic orbital electron populations 1.69999 1.08003 1.28925 1.49059 1.25802 0.95601 1.03237 0.92142 0.86192 0.81023 0.78437 0.79617 1.18784 1.20744 1.15544 1.21392 0.89739 0.94803 1.54874 0.92376 1.19179 0.93515 0.87993 0.83171 0.92612 1.92741 1.90441 1.82910 1.55783 1.24189 0.92533 1.01689 1.06790 1.85560 1.07450 1.03035 1.91474 1.22066 0.97612 0.96478 1.03914 1.21342 0.99167 0.92803 1.02617 1.21123 0.95600 0.95694 0.98697 1.21033 0.94675 0.85618 1.06752 1.98366 1.94354 1.13911 1.96974 1.21222 1.00091 0.90953 0.98397 1.20953 0.94140 0.96261 1.00471 0.91711 0.89146 0.87310 0.85000 0.83199 0.81943 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.17 13.96 21.45 0.30 -54.87 15 2 C 0.03 1.94 5.47 84.66 0.46 2.40 15 3 Si 0.93 42.96 27.07 68.60 1.86 44.82 15 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 15 6 H -0.23 -10.59 5.49 99.48 0.55 -10.04 15 7 C -0.57 -31.08 9.44 25.60 0.24 -30.84 15 8 H 0.06 3.40 7.99 -2.91 -0.02 3.37 15 9 C 0.20 9.06 2.65 29.85 0.08 9.14 15 10 H 0.06 2.45 7.57 -2.39 -0.02 2.43 15 11 F -0.24 -11.38 13.90 44.97 0.63 -10.76 15 12 C -0.10 -3.83 4.05 71.98 0.29 -3.54 15 13 S -0.12 -3.91 21.66 -56.49 -1.22 -5.13 15 14 C -0.09 -2.35 6.11 22.62 0.14 -2.22 15 15 C -0.14 -3.48 9.36 22.41 0.21 -3.27 15 16 C -0.09 -1.99 9.82 22.27 0.22 -1.77 15 17 C -0.05 -1.04 6.32 22.35 0.14 -0.90 15 18 Cl -0.06 -1.17 28.95 -2.72 -0.08 -1.25 15 19 C -0.09 -1.62 9.82 22.27 0.22 -1.40 15 20 C -0.09 -2.06 9.79 22.41 0.22 -1.84 15 21 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 22 H 0.09 3.36 7.74 -2.39 -0.02 3.34 15 23 H 0.11 3.73 7.76 -2.39 -0.02 3.71 15 24 H 0.13 3.47 5.88 -2.91 -0.02 3.46 15 25 H 0.15 2.73 8.06 -2.91 -0.02 2.71 15 26 H 0.16 2.12 8.06 -2.91 -0.02 2.10 15 27 H 0.15 2.77 8.06 -2.91 -0.02 2.75 15 Total: -1.00 -60.85 267.50 4.72 -56.13 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.02 Total: 5.28 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 2.22 Total: -34.23 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.30 Total: -54.87 kcal Atomic # 9 Polarization: -11.38 SS G_CDS: 0.63 Total: -10.76 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.86 Total: 44.82 kcal Atomic # 16 Polarization: -3.91 SS G_CDS: -1.22 Total: -5.13 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -60.85 4.72 -56.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261338099.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.459 kcal (2) G-P(sol) polarization free energy of solvation -60.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds