Wall clock time and date at job start Mon Mar 30 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47314 * 2 1 4 4 C 1.53008 * 109.46635 * 119.99458 * 2 1 3 5 5 C 1.50698 * 109.47067 * 295.00201 * 4 2 1 6 6 C 1.38230 * 120.00135 * 90.00463 * 5 4 2 7 7 C 1.38232 * 120.00017 * 179.72171 * 6 5 4 8 8 C 1.38241 * 120.00089 * 0.25648 * 7 6 5 9 9 C 1.38231 * 119.99883 * 359.97438 * 8 7 6 10 10 C 1.38232 * 120.00028 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47467 * 239.99448 * 2 1 3 12 12 N 1.46504 * 109.46753 * 65.00121 * 11 2 1 13 13 C 1.36939 * 119.99678 * 90.00130 * 12 11 2 14 14 H 1.07994 * 119.99631 * 214.58337 * 13 12 11 15 15 C 1.38811 * 119.99846 * 34.58921 * 13 12 11 16 16 N 1.31612 * 120.00581 * 23.53318 * 15 13 12 17 17 Si 1.86808 * 119.99466 * 203.53452 * 15 13 12 18 18 H 1.48502 * 109.47130 * 90.00199 * 17 15 13 19 19 H 1.48502 * 109.46764 * 209.99784 * 17 15 13 20 20 H 1.48491 * 109.47404 * 329.99921 * 17 15 13 21 21 C 1.46497 * 120.00164 * 269.99688 * 12 11 2 22 22 C 1.52993 * 117.49977 * 194.24133 * 21 12 11 23 23 C 1.53003 * 60.00269 * 252.51174 * 22 21 12 24 24 H 1.08999 * 109.47314 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47490 * 300.00421 * 1 2 3 26 26 H 1.09001 * 109.46931 * 60.00537 * 1 2 3 27 27 H 1.08999 * 109.46795 * 175.00412 * 4 2 1 28 28 H 1.08994 * 109.47088 * 55.00379 * 4 2 1 29 29 H 1.08001 * 119.99826 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.99882 * 180.27258 * 7 6 5 31 31 H 1.08004 * 119.99776 * 180.02562 * 8 7 6 32 32 H 1.08000 * 119.99844 * 180.02562 * 9 8 7 33 33 H 1.07998 * 119.99947 * 180.02562 * 10 9 8 34 34 H 1.08996 * 109.46917 * 185.00407 * 11 2 1 35 35 H 1.09003 * 109.47109 * 305.00390 * 11 2 1 36 36 H 0.96995 * 120.00405 * 174.98237 * 16 15 13 37 37 H 1.09006 * 115.54834 * 339.95197 * 21 12 11 38 38 H 1.08998 * 117.50208 * 359.97438 * 22 21 12 39 39 H 1.09005 * 117.49637 * 145.02613 * 22 21 12 40 40 H 1.09003 * 117.49739 * 252.51238 * 23 22 21 41 41 H 1.08999 * 117.51710 * 107.47919 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6411 0.0572 2.4766 6 6 0.4354 -0.2048 3.0997 7 6 0.0722 0.5053 4.2288 8 6 0.9125 1.4811 4.7317 9 6 2.1161 1.7463 4.1058 10 6 2.4792 1.0363 2.9767 11 6 2.0401 -0.7213 -1.2491 12 7 1.6525 0.0352 -2.4423 13 6 2.4848 1.0020 -2.9403 14 1 2.0702 1.8909 -3.3922 15 6 3.8613 0.8393 -2.8641 16 7 4.3767 -0.3673 -2.7615 17 14 4.9820 2.3332 -2.9073 18 1 5.2125 2.8193 -1.5232 19 1 6.2806 1.9600 -3.5236 20 1 4.3440 3.4077 -3.7095 21 6 0.3748 -0.2425 -3.1028 22 6 0.1685 0.3240 -4.5089 23 6 -0.5782 0.9345 -3.3211 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.1262 -0.7994 1.2058 28 1 1.6053 -1.7197 1.2953 29 1 -0.2211 -0.9671 2.7068 30 1 -0.8679 0.2975 4.7182 31 1 0.6288 2.0355 5.6141 32 1 2.7727 2.5084 4.4989 33 1 3.4198 1.2433 2.4880 34 1 3.1264 -0.7996 -1.2053 35 1 1.6054 -1.7199 -1.2950 36 1 5.3391 -0.4870 -2.7816 37 1 -0.0676 -1.2138 -2.8813 38 1 0.9833 0.9038 -4.9425 39 1 -0.4096 -0.2746 -5.2129 40 1 -1.6474 0.7374 -3.2437 41 1 -0.2544 1.9154 -2.9731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273204223.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:12 Heat of formation + Delta-G solvation = 56.372256 kcal Electronic energy + Delta-G solvation = -19546.852089 eV Core-core repulsion = 16813.504996 eV Total energy + Delta-G solvation = -2733.347092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.19955 -37.33780 -35.15712 -33.08746 -31.08677 -30.70577 -29.45376 -26.30228 -25.39818 -23.60853 -22.32768 -21.38593 -21.06775 -19.79668 -19.21452 -16.62553 -16.16401 -15.51291 -14.96744 -14.90057 -14.35861 -13.92518 -13.73030 -13.52774 -13.20110 -12.96027 -12.46233 -12.15485 -11.91613 -11.67839 -11.31427 -10.97713 -10.89185 -10.82338 -10.76490 -10.59198 -10.54889 -10.32095 -10.09082 -9.83401 -9.63011 -9.40141 -9.21763 -8.70871 -8.43860 -8.34870 -6.46572 -5.80753 -3.32494 1.58985 1.59650 3.34258 3.42341 3.43884 3.99985 4.43692 4.97398 5.06050 5.06698 5.15563 5.27199 5.34489 5.38083 5.60569 5.73362 5.81306 5.91597 5.94983 5.97359 6.14649 6.16673 6.23372 6.27957 6.34437 6.46996 6.50737 6.54557 6.64796 6.66025 6.68346 6.72592 6.92806 6.97436 7.02727 7.08452 7.20141 7.23952 7.34295 7.70323 7.83974 8.50799 9.17948 9.82040 10.37471 11.19254 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.017796 B = 0.006507 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.051031 B = 4302.312038 C = 5252.584985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.067 0.933 4 C -0.078 4.078 5 C -0.060 4.060 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.136 4.136 9 C -0.121 4.121 10 C -0.119 4.119 11 C 0.152 3.848 12 N -0.547 5.547 13 C -0.257 4.257 14 H 0.062 0.938 15 C 0.014 3.986 16 N -0.888 5.888 17 Si 0.896 3.104 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.133 3.867 22 C -0.201 4.201 23 C -0.229 4.229 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.023 0.977 36 H 0.256 0.744 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.516 0.057 10.662 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 H 0.086 0.914 4 C -0.116 4.116 5 C -0.061 4.061 6 C -0.136 4.136 7 C -0.142 4.142 8 C -0.155 4.155 9 C -0.139 4.139 10 C -0.137 4.137 11 C 0.026 3.974 12 N -0.263 5.263 13 C -0.386 4.386 14 H 0.080 0.920 15 C -0.186 4.186 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.203 1.203 21 C 0.023 3.977 22 C -0.240 4.240 23 C -0.270 4.270 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.283 -0.022 10.727 12.432 hybrid contribution 0.528 0.928 -0.071 1.070 sum -5.755 0.906 10.656 12.144 Atomic orbital electron populations 1.21906 0.96578 1.00177 1.01360 1.21725 0.95190 1.00786 0.94407 0.91449 1.20724 1.01299 0.97846 0.91770 1.20098 0.93954 0.96046 0.95961 1.21058 0.96425 1.00354 0.95725 1.21078 0.99421 0.96848 0.96806 1.21026 0.95124 0.98908 1.00395 1.21096 0.96828 0.99707 0.96236 1.21136 1.00101 0.96156 0.96280 1.21059 1.02635 0.90824 0.82899 1.43414 1.15643 1.41581 1.25613 1.18950 0.86582 0.96620 1.36464 0.91992 1.25089 0.97440 0.95846 1.00253 1.69904 1.11329 1.19817 1.51961 0.86393 0.80130 0.82955 0.77954 1.21218 1.21756 1.20326 1.21067 0.89430 0.93081 0.94107 1.23102 1.03021 1.05655 0.92198 1.23367 0.96652 1.01238 1.05725 0.94354 0.94341 0.91410 0.91124 0.91664 0.86313 0.86648 0.86760 0.86570 0.86110 0.88301 0.95835 0.93364 0.89645 0.88440 0.90971 0.91092 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.33 37.16 0.31 -2.19 16 2 C -0.10 -1.93 2.58 -90.62 -0.23 -2.16 16 3 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 4 C -0.08 -1.29 4.84 -27.88 -0.13 -1.43 16 5 C -0.06 -0.93 4.71 -104.62 -0.49 -1.43 16 6 C -0.12 -1.63 7.96 -39.59 -0.32 -1.95 16 7 C -0.12 -1.55 10.05 -39.58 -0.40 -1.95 16 8 C -0.14 -1.68 10.05 -39.58 -0.40 -2.08 16 9 C -0.12 -1.60 10.05 -39.59 -0.40 -2.00 16 10 C -0.12 -1.79 9.70 -39.58 -0.38 -2.17 16 11 C 0.15 3.41 4.81 -4.04 -0.02 3.39 16 12 N -0.55 -13.17 2.63 -165.66 -0.44 -13.60 16 13 C -0.26 -6.80 8.15 -15.06 -0.12 -6.92 16 14 H 0.06 1.68 7.08 -52.49 -0.37 1.31 16 15 C 0.01 0.37 4.93 -17.43 -0.09 0.29 16 16 N -0.89 -24.84 11.39 55.49 0.63 -24.20 16 17 Si 0.90 21.34 29.62 -169.99 -5.03 16.31 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.13 2.82 5.12 -67.93 -0.35 2.48 16 22 C -0.20 -4.06 9.79 -26.73 -0.26 -4.32 16 23 C -0.23 -4.40 8.79 -26.73 -0.24 -4.63 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.63 6.27 -51.93 -0.33 0.30 16 26 H 0.07 1.28 5.30 -51.93 -0.28 1.00 16 27 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 28 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.12 1.51 8.04 -52.49 -0.42 1.09 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.11 1.13 8.06 -52.48 -0.42 0.70 16 32 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.10 2.52 5.38 -51.93 -0.28 2.24 16 35 H 0.02 0.51 8.04 -51.93 -0.42 0.09 16 36 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 38 H 0.10 2.18 6.89 -51.93 -0.36 1.83 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.74 8.01 -51.93 -0.42 1.32 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -27.72 327.23 -10.07 -37.78 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.64 Total: 5.85 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -3.52 Total: -27.07 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.20 Total: -37.81 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.72 -10.07 -37.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273204223.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.156 kcal (2) G-P(sol) polarization free energy of solvation -27.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds