Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.46908 * 110.99837 * 84.99962 * 4 2 1 6 6 C 1.53000 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46831 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99984 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00101 * 359.97438 * 9 7 6 12 12 H 1.48490 * 109.47011 * 90.00343 * 11 9 7 13 13 H 1.48499 * 109.46826 * 210.00545 * 11 9 7 14 14 H 1.48505 * 109.46905 * 330.00225 * 11 9 7 15 15 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 16 16 H 1.09001 * 115.55315 * 154.41379 * 15 2 1 17 17 C 1.53007 * 117.49512 * 8.75080 * 15 2 1 18 18 C 1.52997 * 117.49978 * 300.09138 * 15 2 1 19 19 H 1.08997 * 117.50200 * 359.97157 * 18 15 2 20 20 C 1.50703 * 117.50199 * 214.97393 * 18 15 2 21 21 C 1.38228 * 119.99875 * 299.72928 * 20 18 15 22 22 C 1.38237 * 120.00167 * 179.73953 * 21 20 18 23 23 C 1.38244 * 119.99652 * 0.54982 * 22 21 20 24 24 C 1.38228 * 119.99746 * 359.70349 * 23 22 21 25 25 C 1.38236 * 119.99932 * 119.99282 * 20 18 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.00903 * 111.00093 * 321.05235 * 4 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 5 4 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 5 4 2 32 32 H 1.09000 * 109.47419 * 299.99657 * 6 5 4 33 33 H 1.09002 * 109.47282 * 60.00347 * 6 5 4 34 34 H 0.97002 * 120.00272 * 179.97438 * 10 9 7 35 35 H 1.08998 * 117.49927 * 359.97438 * 17 15 2 36 36 H 1.09002 * 117.49941 * 145.02062 * 17 15 2 37 37 H 1.08002 * 120.00459 * 359.97438 * 21 20 18 38 38 H 1.07998 * 120.00660 * 180.27363 * 22 21 20 39 39 H 1.07995 * 120.00108 * 179.72550 * 23 22 21 40 40 H 1.08007 * 120.00014 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.00225 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5332 -3.5744 7 6 2.6602 0.4057 -4.7514 8 1 2.3650 1.4380 -4.6356 9 6 3.0956 -0.0536 -5.9764 10 7 3.1519 0.7657 -7.0036 11 14 3.6056 -1.8394 -6.1769 12 1 2.4255 -2.6499 -6.5711 13 1 4.6495 -1.9410 -7.2281 14 1 4.1473 -2.3469 -4.8906 15 6 2.0400 -0.7212 1.2493 16 1 3.0330 -1.1628 1.1648 17 6 1.0108 -1.4565 2.1101 18 6 1.6340 -0.1506 2.6096 19 1 1.0039 0.7388 2.6146 20 6 2.6373 -0.2426 3.7303 21 6 3.0922 -1.4782 4.1510 22 6 4.0166 -1.5624 5.1754 23 6 4.4775 -0.4113 5.7867 24 6 4.0187 0.8240 5.3695 25 6 3.0986 0.9085 4.3412 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.4496 -1.4979 -1.4100 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 3.5905 -0.9272 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.4586 0.4427 -7.8654 35 1 -0.0296 -1.4261 1.7866 36 1 1.3268 -2.3816 2.5923 37 1 2.7283 -2.3778 3.6769 38 1 4.3754 -2.5275 5.5012 39 1 5.1964 -0.4772 6.5900 40 1 4.3784 1.7233 5.8473 41 1 2.7397 1.8736 4.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283439933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 37.916730 kcal Electronic energy + Delta-G solvation = -18275.856576 eV Core-core repulsion = 15541.709192 eV Total energy + Delta-G solvation = -2734.147384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95279 -38.14032 -35.58112 -33.01345 -31.37735 -31.08178 -29.98584 -28.00932 -24.92148 -23.97113 -23.22249 -22.52275 -20.59331 -20.34671 -19.25679 -17.34471 -16.75351 -15.93256 -15.26671 -15.02460 -14.67785 -14.46819 -14.21505 -13.83846 -13.53251 -13.21784 -13.05065 -12.78470 -12.44919 -12.16892 -11.85866 -11.64282 -11.48234 -11.31135 -11.16350 -10.99401 -10.89993 -10.58959 -10.08891 -9.97978 -9.85635 -9.67449 -9.21342 -9.07826 -8.62370 -8.52299 -7.89609 -6.03098 -4.01366 1.17569 1.24581 3.33285 3.40806 3.46550 3.47178 3.98319 4.30022 4.47774 4.68300 4.69089 4.81124 4.85506 4.95197 5.04327 5.12482 5.23885 5.31541 5.33020 5.38582 5.46083 5.48052 5.68632 5.80950 5.88733 5.90854 5.95227 6.00456 6.17708 6.23821 6.27676 6.34847 6.35465 6.40317 6.51897 6.79444 6.84712 7.16995 7.40219 7.64858 7.78745 7.94164 8.54669 9.01067 9.59434 11.10286 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.003297 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.835703 B = 8489.843519 C = 8710.087036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.111 3.889 3 H 0.080 0.920 4 N -0.687 5.687 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.263 1.263 15 C -0.112 4.112 16 H 0.113 0.887 17 C -0.180 4.180 18 C -0.122 4.122 19 H 0.110 0.890 20 C -0.043 4.043 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.116 4.116 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.336 0.664 30 H 0.022 0.978 31 H 0.064 0.936 32 H 0.025 0.975 33 H 0.008 0.992 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.580 -3.689 25.365 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.001 3.999 3 H 0.098 0.902 4 N -0.317 5.317 5 C -0.054 4.054 6 C -0.048 4.048 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.135 4.135 10 N -0.544 5.544 11 Si 0.709 3.291 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.187 1.187 15 C -0.131 4.131 16 H 0.131 0.869 17 C -0.216 4.216 18 C -0.140 4.140 19 H 0.128 0.872 20 C -0.043 4.043 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.149 4.149 24 C -0.136 4.136 25 C -0.134 4.134 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.040 0.960 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.858 -3.587 25.319 25.639 hybrid contribution -0.670 -0.734 -0.458 1.094 sum -2.527 -4.321 24.860 25.359 Atomic orbital electron populations 1.22629 0.97722 1.01998 1.01990 1.21016 0.91858 0.97544 0.89529 0.90225 1.60598 1.56576 1.10265 1.04243 1.21985 0.98725 0.95080 0.89628 1.19547 0.96550 0.96009 0.92674 1.21080 1.44237 0.97761 0.92866 0.91146 1.25013 0.95001 0.97658 0.95789 1.69917 1.47845 1.35387 1.01219 0.86744 0.78605 0.85593 0.78184 1.20416 1.21441 1.18728 1.22562 0.99872 1.01450 0.89179 0.86933 1.23344 0.99401 0.95027 1.03833 1.21167 1.00436 0.98625 0.93806 0.87154 1.19211 0.96408 0.93178 0.95460 1.21094 0.97840 0.97468 0.97538 1.21128 0.97426 0.98436 0.96593 1.21124 1.00559 0.92750 1.00432 1.21128 0.97541 0.97673 0.97299 1.20990 0.97848 0.98046 0.96496 0.92144 0.92309 0.92495 0.84617 0.95995 0.91787 0.95672 0.97337 0.92741 0.87938 0.88808 0.85904 0.86211 0.86331 0.86164 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 7.76 37.16 0.29 -1.88 16 2 C 0.11 1.51 2.98 -67.72 -0.20 1.30 16 3 H 0.08 1.15 7.80 -51.93 -0.40 0.74 16 4 N -0.69 -11.44 6.25 -106.73 -0.67 -12.11 16 5 C 0.07 1.49 5.42 -3.82 -0.02 1.47 16 6 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 11 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 15 C -0.11 -1.34 5.65 -90.62 -0.51 -1.86 16 16 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 17 C -0.18 -1.79 8.90 -26.69 -0.24 -2.03 16 18 C -0.12 -1.28 5.41 -91.73 -0.50 -1.77 16 19 H 0.11 1.09 7.60 -51.93 -0.39 0.69 16 20 C -0.04 -0.46 5.61 -104.63 -0.59 -1.05 16 21 C -0.12 -1.25 9.30 -39.59 -0.37 -1.62 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.19 9.74 -39.58 -0.39 -1.57 16 26 H 0.06 0.67 6.96 -51.93 -0.36 0.30 16 27 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 28 H 0.06 0.58 7.07 -51.93 -0.37 0.21 16 29 H 0.34 5.33 8.47 -39.29 -0.33 5.00 16 30 H 0.02 0.44 7.44 -51.93 -0.39 0.05 16 31 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 32 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 33 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 34 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 35 H 0.10 0.96 5.85 -51.93 -0.30 0.66 16 36 H 0.09 0.86 6.17 -51.93 -0.32 0.54 16 37 H 0.12 1.14 6.02 -52.49 -0.32 0.82 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -31.02 329.10 -10.33 -41.34 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.46 Total: 3.33 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: -4.26 Total: -27.47 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.11 Total: -39.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.02 -10.33 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283439933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.258 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds