Wall clock time and date at job start Mon Mar 30 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 5 5 C 1.46908 * 110.99837 * 84.99962 * 4 2 1 6 6 C 1.53000 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.50704 * 109.46831 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00030 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99984 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00101 * 359.97438 * 9 7 6 12 12 H 1.48490 * 109.47011 * 90.00343 * 11 9 7 13 13 H 1.48499 * 109.46826 * 210.00545 * 11 9 7 14 14 H 1.48505 * 109.46905 * 330.00225 * 11 9 7 15 15 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 16 16 H 1.09001 * 115.55315 * 154.41379 * 15 2 1 17 17 C 1.53007 * 117.49512 * 8.75080 * 15 2 1 18 18 C 1.52997 * 117.49978 * 300.09138 * 15 2 1 19 19 H 1.08997 * 117.50200 * 359.97157 * 18 15 2 20 20 C 1.50703 * 117.50199 * 214.97393 * 18 15 2 21 21 C 1.38228 * 119.99875 * 299.72928 * 20 18 15 22 22 C 1.38237 * 120.00167 * 179.73953 * 21 20 18 23 23 C 1.38244 * 119.99652 * 0.54982 * 22 21 20 24 24 C 1.38228 * 119.99746 * 359.70349 * 23 22 21 25 25 C 1.38236 * 119.99932 * 119.99282 * 20 18 15 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.00903 * 111.00093 * 321.05235 * 4 2 1 30 30 H 1.08993 * 109.47111 * 300.00155 * 5 4 2 31 31 H 1.09002 * 109.46900 * 60.00465 * 5 4 2 32 32 H 1.09000 * 109.47419 * 299.99657 * 6 5 4 33 33 H 1.09002 * 109.47282 * 60.00347 * 6 5 4 34 34 H 0.97002 * 120.00272 * 179.97438 * 10 9 7 35 35 H 1.08998 * 117.49927 * 359.97438 * 17 15 2 36 36 H 1.09002 * 117.49941 * 145.02062 * 17 15 2 37 37 H 1.08002 * 120.00459 * 359.97438 * 21 20 18 38 38 H 1.07998 * 120.00660 * 180.27363 * 22 21 20 39 39 H 1.07995 * 120.00108 * 179.72550 * 23 22 21 40 40 H 1.08007 * 120.00014 * 179.97438 * 24 23 22 41 41 H 1.07996 * 120.00225 * 0.02562 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.0825 0.2226 -2.3468 6 6 2.5952 -0.5332 -3.5744 7 6 2.6602 0.4057 -4.7514 8 1 2.3650 1.4380 -4.6356 9 6 3.0956 -0.0536 -5.9764 10 7 3.1519 0.7657 -7.0036 11 14 3.6056 -1.8394 -6.1769 12 1 2.4255 -2.6499 -6.5711 13 1 4.6495 -1.9410 -7.2281 14 1 4.1473 -2.3469 -4.8906 15 6 2.0400 -0.7212 1.2493 16 1 3.0330 -1.1628 1.1648 17 6 1.0108 -1.4565 2.1101 18 6 1.6340 -0.1506 2.6096 19 1 1.0039 0.7388 2.6146 20 6 2.6373 -0.2426 3.7303 21 6 3.0922 -1.4782 4.1510 22 6 4.0166 -1.5624 5.1754 23 6 4.4775 -0.4113 5.7867 24 6 4.0187 0.8240 5.3695 25 6 3.0986 0.9085 4.3412 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.4496 -1.4979 -1.4100 30 1 1.0872 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 3.5905 -0.9272 -3.3690 33 1 1.9185 -1.3566 -3.8029 34 1 3.4586 0.4427 -7.8654 35 1 -0.0296 -1.4261 1.7866 36 1 1.3268 -2.3816 2.5923 37 1 2.7283 -2.3778 3.6769 38 1 4.3754 -2.5275 5.5012 39 1 5.1964 -0.4772 6.5900 40 1 4.3784 1.7233 5.8473 41 1 2.7397 1.8736 4.0156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283439933.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:14 Heat of formation + Delta-G solvation = 20.516728 kcal Electronic energy + Delta-G solvation = -18276.611097 eV Core-core repulsion = 15541.709192 eV Total energy + Delta-G solvation = -2734.901904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75194 -39.07799 -36.90609 -34.98174 -32.83496 -31.79768 -31.13107 -29.36615 -26.38650 -24.71879 -24.65827 -23.25918 -22.33797 -21.20204 -20.32419 -18.96224 -18.08045 -16.89492 -16.34308 -16.26621 -16.08205 -15.58518 -15.40472 -15.00091 -14.80982 -14.46653 -14.17192 -13.92677 -13.78125 -13.48338 -13.08423 -12.88668 -12.77106 -12.41010 -12.32833 -12.13291 -11.89381 -11.76513 -11.75189 -11.57929 -11.43294 -11.26325 -10.85202 -10.77098 -9.79495 -9.41698 -9.23792 -8.30513 -6.35195 0.44259 0.52844 1.36319 1.39221 1.52450 2.36746 2.68009 3.05104 3.17331 3.23974 3.73092 3.93264 4.04096 4.13580 4.15178 4.20323 4.28905 4.32832 4.39404 4.43514 4.51769 4.59956 4.64346 4.76131 4.89950 4.92120 4.96381 5.02102 5.11214 5.19580 5.23609 5.28504 5.29435 5.40689 5.49650 5.62428 5.63929 5.65517 5.76741 6.15213 6.19200 6.26425 6.58678 6.74176 7.29851 8.86280 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.029441 B = 0.003297 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.835703 B = 8489.843519 C = 8710.087036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.112 3.888 3 H 0.066 0.934 4 N -0.688 5.688 5 C 0.089 3.911 6 C -0.004 4.004 7 C -0.535 4.535 8 H 0.031 0.969 9 C 0.004 3.996 10 N -0.952 5.952 11 Si 0.955 3.045 12 H -0.264 1.264 13 H -0.284 1.284 14 H -0.248 1.248 15 C -0.124 4.124 16 H 0.094 0.906 17 C -0.164 4.164 18 C -0.113 4.113 19 H 0.117 0.883 20 C -0.062 4.062 21 C -0.134 4.134 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.131 4.131 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.343 0.657 30 H 0.018 0.982 31 H 0.050 0.950 32 H 0.021 0.979 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.756 -5.646 27.344 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.002 3.998 3 H 0.084 0.916 4 N -0.319 5.319 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.192 4.192 10 N -0.592 5.592 11 Si 0.778 3.222 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.172 1.172 15 C -0.143 4.143 16 H 0.113 0.887 17 C -0.200 4.200 18 C -0.132 4.132 19 H 0.135 0.865 20 C -0.062 4.062 21 C -0.152 4.152 22 C -0.145 4.145 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.149 4.149 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.148 0.852 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.048 -5.543 27.327 27.959 hybrid contribution -0.600 -0.023 -1.008 1.173 sum -2.648 -5.567 26.319 27.032 Atomic orbital electron populations 1.22549 0.95974 1.02862 1.02227 1.21024 0.93228 0.96754 0.88768 0.91617 1.60499 1.57636 1.09986 1.03746 1.21622 0.97938 0.94799 0.89661 1.19431 0.96687 0.95535 0.92507 1.21424 1.43922 0.97020 0.94953 0.95079 1.26022 0.94946 1.02985 0.95284 1.70068 1.49165 1.37983 1.02005 0.85584 0.78683 0.79182 0.78742 1.18930 1.20958 1.17194 1.22290 0.99730 1.03052 0.89248 0.88732 1.23423 0.99270 0.95187 1.02122 1.21181 1.00243 0.99250 0.92507 0.86532 1.19368 0.97099 0.93740 0.95998 1.21288 0.98295 0.97582 0.98041 1.21440 0.97124 0.99588 0.96304 1.21469 1.00638 0.92533 1.00766 1.21435 0.97205 0.98746 0.97074 1.21221 0.98359 0.98332 0.97021 0.90916 0.93810 0.90511 0.83817 0.96336 0.93098 0.96083 0.96237 0.92416 0.86810 0.87891 0.85247 0.84348 0.84172 0.84308 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.86 7.76 71.98 0.56 -3.30 16 2 C 0.11 2.94 2.98 44.92 0.13 3.07 16 3 H 0.07 1.89 7.80 -2.39 -0.02 1.87 16 4 N -0.69 -22.33 6.25 -491.58 -3.07 -25.41 16 5 C 0.09 3.60 5.42 86.30 0.47 4.07 16 6 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 7 C -0.53 -31.62 9.66 25.60 0.25 -31.37 16 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 9 C 0.00 0.26 5.47 84.66 0.46 0.73 16 10 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 11 Si 0.96 45.18 27.47 68.60 1.88 47.06 16 12 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 15 C -0.12 -2.84 5.65 -10.79 -0.06 -2.90 16 16 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 17 C -0.16 -2.88 8.90 30.62 0.27 -2.61 16 18 C -0.11 -2.20 5.41 -11.51 -0.06 -2.27 16 19 H 0.12 2.09 7.60 -2.39 -0.02 2.07 16 20 C -0.06 -1.27 5.61 -19.87 -0.11 -1.39 16 21 C -0.13 -2.58 9.30 22.27 0.21 -2.37 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 23 C -0.14 -2.20 10.05 22.27 0.22 -1.97 16 24 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 25 C -0.13 -2.55 9.74 22.27 0.22 -2.33 16 26 H 0.07 1.41 6.96 -2.39 -0.02 1.39 16 27 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 28 H 0.08 1.37 7.07 -2.38 -0.02 1.35 16 29 H 0.34 10.32 8.47 -89.69 -0.76 9.56 16 30 H 0.02 0.75 7.44 -2.39 -0.02 0.74 16 31 H 0.05 2.17 8.06 -2.39 -0.02 2.15 16 32 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 33 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 34 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 35 H 0.11 1.76 5.85 -2.39 -0.01 1.75 16 36 H 0.10 1.64 6.17 -2.39 -0.01 1.63 16 37 H 0.13 2.19 6.02 -2.91 -0.02 2.17 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -67.47 329.10 2.44 -65.03 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.19 Total: 20.23 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.13 Total: -46.56 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -2.77 Total: -85.76 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -67.47 2.44 -65.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283439933.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.550 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds