Wall clock time and date at job start Mon Mar 30 2020 06:26:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08992 * 109.47202 * 2 1
4 4 N 1.46897 * 109.47115 * 120.00459 * 2 1 3
5 5 C 1.46899 * 110.99724 * 274.99676 * 4 2 1
6 6 H 1.08995 * 110.01926 * 326.39439 * 5 4 2
7 7 C 1.53882 * 110.03117 * 87.83161 * 5 4 2
8 8 C 1.54468 * 106.68100 * 119.44540 * 7 5 4
9 9 C 1.54886 * 104.10609 * 23.34148 * 8 7 5
10 10 H 1.09000 * 110.75738 * 80.70425 * 9 8 7
11 11 C 1.50700 * 110.75777 * 203.89600 * 9 8 7
12 12 H 1.08002 * 119.99770 * 116.06600 * 11 9 8
13 13 C 1.37871 * 120.00083 * 296.06279 * 11 9 8
14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 9
15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 9
16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11
17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11
18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11
19 19 C 1.54263 * 110.03243 * 204.99778 * 5 4 2
20 20 C 1.50708 * 109.46823 * 240.00039 * 2 1 3
21 21 C 1.38231 * 120.00006 * 279.72580 * 20 2 1
22 22 C 1.38236 * 120.00285 * 179.81132 * 21 20 2
23 23 C 1.38237 * 119.99346 * 0.40086 * 22 21 20
24 24 C 1.38233 * 120.00100 * 359.85158 * 23 22 21
25 25 C 1.38231 * 120.00437 * 359.96179 * 24 23 22
26 26 H 1.09004 * 109.46770 * 59.99808 * 1 2 3
27 27 H 1.09001 * 109.47428 * 179.97438 * 1 2 3
28 28 H 1.09001 * 109.47360 * 300.00180 * 1 2 3
29 29 H 1.00897 * 111.00403 * 151.04315 * 4 2 1
30 30 H 1.08995 * 110.03081 * 238.56235 * 7 5 4
31 31 H 1.08991 * 110.03214 * 359.95743 * 7 5 4
32 32 H 1.09006 * 110.40348 * 264.75334 * 8 7 5
33 33 H 1.09000 * 110.66173 * 142.05708 * 8 7 5
34 34 H 0.97005 * 119.99661 * 359.97438 * 14 13 11
35 35 H 1.09001 * 110.49051 * 98.42782 * 19 5 4
36 36 H 1.08997 * 110.48864 * 335.78629 * 19 5 4
37 37 H 1.08008 * 120.00133 * 0.02562 * 21 20 2
38 38 H 1.07998 * 120.00415 * 180.22989 * 22 21 20
39 39 H 1.08001 * 120.00072 * 179.83650 * 23 22 21
40 40 H 1.08003 * 119.99949 * 179.97438 * 24 23 22
41 41 H 1.07999 * 120.00664 * 179.97438 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0196 -0.6926 1.1994
5 6 2.0825 0.2225 2.3468
6 1 2.3403 1.2264 2.0098
7 6 0.7295 0.2427 3.0796
8 6 0.9987 -0.2426 4.5212
9 6 2.5031 0.0515 4.7437
10 1 2.6583 1.1001 4.9975
11 6 3.0698 -0.8446 5.8146
12 1 3.8391 -1.5612 5.5677
13 6 2.6061 -0.7496 7.1095
14 7 1.6690 0.1227 7.4101
15 14 3.3091 -1.8599 8.4372
16 1 2.6480 -1.5618 9.7330
17 1 3.0691 -3.2795 8.0734
18 1 4.7695 -1.6205 8.5606
19 6 3.1277 -0.2778 3.3651
20 6 2.0323 -0.7104 -1.2306
21 6 2.0720 -2.0918 -1.2633
22 6 2.5290 -2.7436 -2.3935
23 6 2.9541 -2.0137 -3.4877
24 6 2.9193 -0.6322 -3.4530
25 6 2.4587 0.0194 -2.3243
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3634 0.5139 0.8900
29 1 2.9172 -1.1206 1.0287
30 1 0.3304 1.2567 3.0989
31 1 0.0261 -0.4259 2.5834
32 1 0.8025 -1.3115 4.6052
33 1 0.3915 0.3148 5.2343
34 1 1.3042 0.6995 6.7208
35 1 4.0705 0.2540 3.2366
36 1 3.2777 -1.3524 3.2611
37 1 1.7426 -2.6620 -0.4072
38 1 2.5565 -3.8229 -2.4204
39 1 3.3137 -2.5228 -4.3698
40 1 3.2519 -0.0620 -4.3078
41 1 2.4319 1.0987 -2.2970
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000294994443.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:26:14
Heat of formation + Delta-G solvation = 4.606355 kcal
Electronic energy + Delta-G solvation = -19085.917156 eV
Core-core repulsion = 16350.325326 eV
Total energy + Delta-G solvation = -2735.591830 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 259.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-39.65909 -37.92717 -35.32776 -32.62973 -31.03379 -30.53255 -29.12125 -27.93222
-25.97164 -23.81453 -23.16258 -22.50885 -20.41468 -19.54754 -19.04035 -16.99323
-16.76238 -15.57946 -15.43058 -15.39202 -14.43571 -13.96931 -13.71699 -13.68826
-13.41890 -13.08766 -12.86226 -12.34402 -12.20258 -12.02473 -11.78799 -11.66762
-11.16290 -10.88571 -10.83990 -10.65897 -10.46116 -10.15665 -10.03760 -9.93691
-9.61159 -9.32021 -9.00579 -8.80403 -8.38654 -8.26197 -8.16167 -6.25204
-3.97032 1.24880 1.31934 3.47620 3.49315 3.67870 3.69484 4.34344
4.59434 4.64812 4.83991 4.89831 5.05817 5.29281 5.39372 5.41334
5.43170 5.52691 5.55830 5.63829 5.75020 5.85285 5.89476 5.98987
6.02479 6.23883 6.31962 6.35390 6.40656 6.43269 6.51835 6.57781
6.70368 6.78042 6.87513 6.91526 7.02523 7.16135 7.40673 7.51946
7.69486 7.78021 8.33988 8.52096 8.97393 9.74613 11.12404
Molecular weight = 259.16amu
Principal moments of inertia in cm(-1)
A = 0.035780 B = 0.003983 C = 0.003767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 782.373489 B = 7027.468634 C = 7431.682170
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.122 3.878
3 H 0.047 0.953
4 N -0.674 5.674
5 C 0.083 3.917
6 H 0.034 0.966
7 C -0.115 4.115
8 C -0.112 4.112
9 C 0.036 3.964
10 H 0.019 0.981
11 C -0.592 4.592
12 H 0.047 0.953
13 C 0.019 3.981
14 N -0.916 5.916
15 Si 1.065 2.935
16 H -0.283 1.283
17 H -0.289 1.289
18 H -0.289 1.289
19 C -0.111 4.111
20 C -0.084 4.084
21 C -0.100 4.100
22 C -0.122 4.122
23 C -0.126 4.126
24 C -0.124 4.124
25 C -0.117 4.117
26 H 0.049 0.951
27 H 0.061 0.939
28 H 0.065 0.935
29 H 0.339 0.661
30 H 0.043 0.957
31 H 0.065 0.935
32 H 0.054 0.946
33 H 0.052 0.948
34 H 0.272 0.728
35 H 0.043 0.957
36 H 0.066 0.934
37 H 0.133 0.867
38 H 0.121 0.879
39 H 0.118 0.882
40 H 0.119 0.881
41 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.042 -1.390 -19.992 20.040
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.013 3.987
3 H 0.065 0.935
4 N -0.306 5.306
5 C -0.026 4.026
6 H 0.052 0.948
7 C -0.154 4.154
8 C -0.151 4.151
9 C 0.017 3.983
10 H 0.037 0.963
11 C -0.630 4.630
12 H 0.065 0.935
13 C -0.185 4.185
14 N -0.553 5.553
15 Si 0.894 3.106
16 H -0.209 1.209
17 H -0.215 1.215
18 H -0.216 1.216
19 C -0.149 4.149
20 C -0.085 4.085
21 C -0.118 4.118
22 C -0.141 4.141
23 C -0.144 4.144
24 C -0.142 4.142
25 C -0.136 4.136
26 H 0.068 0.932
27 H 0.080 0.920
28 H 0.084 0.916
29 H 0.158 0.842
30 H 0.062 0.938
31 H 0.083 0.917
32 H 0.073 0.927
33 H 0.071 0.929
34 H 0.084 0.916
35 H 0.062 0.938
36 H 0.084 0.916
37 H 0.151 0.849
38 H 0.139 0.861
39 H 0.136 0.864
40 H 0.137 0.863
41 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges -0.683 -1.994 -18.197 18.319
hybrid contribution 0.920 0.935 -2.002 2.393
sum 0.237 -1.059 -20.199 20.228
Atomic orbital electron populations
1.21881 0.93772 1.02502 1.01333 1.20522 0.96172 0.94946 0.87097
0.93498 1.60810 1.33137 1.33272 1.03382 1.22352 0.97302 0.92670
0.90242 0.94766 1.22368 0.95901 0.99467 0.97628 1.22548 0.99799
1.00155 0.92569 1.19672 0.91150 0.96179 0.91298 0.96304 1.21948
1.24117 1.22064 0.94853 0.93467 1.25744 0.95417 0.98485 0.98860
1.70796 1.25860 1.20873 1.37745 0.83596 0.75593 0.75413 0.75980
1.20887 1.21520 1.21611 1.22534 0.95682 1.00433 0.96232 1.20083
0.98661 0.94182 0.95560 1.21157 0.98377 0.94007 0.98253 1.21203
0.99322 0.99907 0.93621 1.21136 1.00511 0.94216 0.98568 1.21080
1.00399 0.94659 0.98035 1.21052 0.99400 0.99700 0.93402 0.93186
0.91983 0.91614 0.84160 0.93796 0.91670 0.92669 0.92890 0.91578
0.93811 0.91566 0.84935 0.86139 0.86408 0.86333 0.86369
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.73 8.80 37.16 0.33 -1.40 16
2 C 0.12 1.61 2.82 -68.86 -0.19 1.41 16
3 H 0.05 0.63 7.29 -51.93 -0.38 0.25 16
4 N -0.67 -10.24 5.40 -99.78 -0.54 -10.78 16
5 C 0.08 1.48 3.25 -66.59 -0.22 1.26 16
6 H 0.03 0.60 7.43 -51.93 -0.39 0.21 16
7 C -0.12 -2.18 5.26 -25.50 -0.13 -2.32 16
8 C -0.11 -2.62 5.62 -24.97 -0.14 -2.76 16
9 C 0.04 0.90 2.40 -89.78 -0.22 0.68 16
10 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16
11 C -0.59 -16.71 8.52 -34.44 -0.29 -17.00 16
12 H 0.05 1.33 7.78 -52.49 -0.41 0.92 16
13 C 0.02 0.54 5.35 -17.82 -0.10 0.45 16
14 N -0.92 -27.68 13.45 55.43 0.75 -26.93 16
15 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16
16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
19 C -0.11 -2.31 5.67 -25.07 -0.14 -2.45 16
20 C -0.08 -1.03 4.72 -104.62 -0.49 -1.52 16
21 C -0.10 -1.18 9.00 -39.58 -0.36 -1.54 16
22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16
23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16
24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16
25 C -0.12 -1.28 9.67 -39.59 -0.38 -1.67 16
26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
28 H 0.06 0.88 6.02 -51.93 -0.31 0.57 16
29 H 0.34 5.06 7.57 -39.29 -0.30 4.76 16
30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16
31 H 0.06 1.18 6.57 -51.93 -0.34 0.84 16
32 H 0.05 1.37 8.04 -51.93 -0.42 0.95 16
33 H 0.05 1.30 6.47 -51.93 -0.34 0.97 16
34 H 0.27 8.11 5.40 -40.82 -0.22 7.89 16
35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16
36 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16
37 H 0.13 1.62 7.71 -52.48 -0.40 1.22 16
38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16
39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16
40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16
41 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16
LS Contribution 322.20 15.07 4.86 4.86
Total: -1.00 -29.78 322.20 -10.05 -39.84
By element:
Atomic # 1 Polarization: 10.96 SS G_CDS: -6.50 Total: 4.46 kcal
Atomic # 6 Polarization: -28.24 SS G_CDS: -3.53 Total: -31.77 kcal
Atomic # 7 Polarization: -37.92 SS G_CDS: 0.21 Total: -37.71 kcal
Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal
Total LS contribution 4.86 Total: 4.86 kcal
Total: -29.78 -10.05 -39.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000294994443.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.444 kcal
(2) G-P(sol) polarization free energy of solvation -29.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.661 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.606 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds