Wall clock time and date at job start Mon Mar 30 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47202 * 2 1 4 4 N 1.46897 * 109.47115 * 120.00459 * 2 1 3 5 5 C 1.46899 * 110.99724 * 274.99676 * 4 2 1 6 6 H 1.08995 * 110.01926 * 326.39439 * 5 4 2 7 7 C 1.53882 * 110.03117 * 87.83161 * 5 4 2 8 8 C 1.54468 * 106.68100 * 119.44540 * 7 5 4 9 9 C 1.54886 * 104.10609 * 23.34148 * 8 7 5 10 10 H 1.09000 * 110.75738 * 80.70425 * 9 8 7 11 11 C 1.50700 * 110.75777 * 203.89600 * 9 8 7 12 12 H 1.08002 * 119.99770 * 116.06600 * 11 9 8 13 13 C 1.37871 * 120.00083 * 296.06279 * 11 9 8 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 C 1.54263 * 110.03243 * 204.99778 * 5 4 2 20 20 C 1.50708 * 109.46823 * 240.00039 * 2 1 3 21 21 C 1.38231 * 120.00006 * 279.72580 * 20 2 1 22 22 C 1.38236 * 120.00285 * 179.81132 * 21 20 2 23 23 C 1.38237 * 119.99346 * 0.40086 * 22 21 20 24 24 C 1.38233 * 120.00100 * 359.85158 * 23 22 21 25 25 C 1.38231 * 120.00437 * 359.96179 * 24 23 22 26 26 H 1.09004 * 109.46770 * 59.99808 * 1 2 3 27 27 H 1.09001 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47360 * 300.00180 * 1 2 3 29 29 H 1.00897 * 111.00403 * 151.04315 * 4 2 1 30 30 H 1.08995 * 110.03081 * 238.56235 * 7 5 4 31 31 H 1.08991 * 110.03214 * 359.95743 * 7 5 4 32 32 H 1.09006 * 110.40348 * 264.75334 * 8 7 5 33 33 H 1.09000 * 110.66173 * 142.05708 * 8 7 5 34 34 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 35 35 H 1.09001 * 110.49051 * 98.42782 * 19 5 4 36 36 H 1.08997 * 110.48864 * 335.78629 * 19 5 4 37 37 H 1.08008 * 120.00133 * 0.02562 * 21 20 2 38 38 H 1.07998 * 120.00415 * 180.22989 * 22 21 20 39 39 H 1.08001 * 120.00072 * 179.83650 * 23 22 21 40 40 H 1.08003 * 119.99949 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00664 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 1 2.3403 1.2264 2.0098 7 6 0.7295 0.2427 3.0796 8 6 0.9987 -0.2426 4.5212 9 6 2.5031 0.0515 4.7437 10 1 2.6583 1.1001 4.9975 11 6 3.0698 -0.8446 5.8146 12 1 3.8391 -1.5612 5.5677 13 6 2.6061 -0.7496 7.1095 14 7 1.6690 0.1227 7.4101 15 14 3.3091 -1.8599 8.4372 16 1 2.6480 -1.5618 9.7330 17 1 3.0691 -3.2795 8.0734 18 1 4.7695 -1.6205 8.5606 19 6 3.1277 -0.2778 3.3651 20 6 2.0323 -0.7104 -1.2306 21 6 2.0720 -2.0918 -1.2633 22 6 2.5290 -2.7436 -2.3935 23 6 2.9541 -2.0137 -3.4877 24 6 2.9193 -0.6322 -3.4530 25 6 2.4587 0.0194 -2.3243 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.9172 -1.1206 1.0287 30 1 0.3304 1.2567 3.0989 31 1 0.0261 -0.4259 2.5834 32 1 0.8025 -1.3115 4.6052 33 1 0.3915 0.3148 5.2343 34 1 1.3042 0.6995 6.7208 35 1 4.0705 0.2540 3.2366 36 1 3.2777 -1.3524 3.2611 37 1 1.7426 -2.6620 -0.4072 38 1 2.5565 -3.8229 -2.4204 39 1 3.3137 -2.5228 -4.3698 40 1 3.2519 -0.0620 -4.3078 41 1 2.4319 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294994443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:14 Heat of formation + Delta-G solvation = 4.606355 kcal Electronic energy + Delta-G solvation = -19085.917156 eV Core-core repulsion = 16350.325326 eV Total energy + Delta-G solvation = -2735.591830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.65909 -37.92717 -35.32776 -32.62973 -31.03379 -30.53255 -29.12125 -27.93222 -25.97164 -23.81453 -23.16258 -22.50885 -20.41468 -19.54754 -19.04035 -16.99323 -16.76238 -15.57946 -15.43058 -15.39202 -14.43571 -13.96931 -13.71699 -13.68826 -13.41890 -13.08766 -12.86226 -12.34402 -12.20258 -12.02473 -11.78799 -11.66762 -11.16290 -10.88571 -10.83990 -10.65897 -10.46116 -10.15665 -10.03760 -9.93691 -9.61159 -9.32021 -9.00579 -8.80403 -8.38654 -8.26197 -8.16167 -6.25204 -3.97032 1.24880 1.31934 3.47620 3.49315 3.67870 3.69484 4.34344 4.59434 4.64812 4.83991 4.89831 5.05817 5.29281 5.39372 5.41334 5.43170 5.52691 5.55830 5.63829 5.75020 5.85285 5.89476 5.98987 6.02479 6.23883 6.31962 6.35390 6.40656 6.43269 6.51835 6.57781 6.70368 6.78042 6.87513 6.91526 7.02523 7.16135 7.40673 7.51946 7.69486 7.78021 8.33988 8.52096 8.97393 9.74613 11.12404 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.003983 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.373489 B = 7027.468634 C = 7431.682170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.122 3.878 3 H 0.047 0.953 4 N -0.674 5.674 5 C 0.083 3.917 6 H 0.034 0.966 7 C -0.115 4.115 8 C -0.112 4.112 9 C 0.036 3.964 10 H 0.019 0.981 11 C -0.592 4.592 12 H 0.047 0.953 13 C 0.019 3.981 14 N -0.916 5.916 15 Si 1.065 2.935 16 H -0.283 1.283 17 H -0.289 1.289 18 H -0.289 1.289 19 C -0.111 4.111 20 C -0.084 4.084 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.117 4.117 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.339 0.661 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.272 0.728 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -1.390 -19.992 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.013 3.987 3 H 0.065 0.935 4 N -0.306 5.306 5 C -0.026 4.026 6 H 0.052 0.948 7 C -0.154 4.154 8 C -0.151 4.151 9 C 0.017 3.983 10 H 0.037 0.963 11 C -0.630 4.630 12 H 0.065 0.935 13 C -0.185 4.185 14 N -0.553 5.553 15 Si 0.894 3.106 16 H -0.209 1.209 17 H -0.215 1.215 18 H -0.216 1.216 19 C -0.149 4.149 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.136 4.136 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.683 -1.994 -18.197 18.319 hybrid contribution 0.920 0.935 -2.002 2.393 sum 0.237 -1.059 -20.199 20.228 Atomic orbital electron populations 1.21881 0.93772 1.02502 1.01333 1.20522 0.96172 0.94946 0.87097 0.93498 1.60810 1.33137 1.33272 1.03382 1.22352 0.97302 0.92670 0.90242 0.94766 1.22368 0.95901 0.99467 0.97628 1.22548 0.99799 1.00155 0.92569 1.19672 0.91150 0.96179 0.91298 0.96304 1.21948 1.24117 1.22064 0.94853 0.93467 1.25744 0.95417 0.98485 0.98860 1.70796 1.25860 1.20873 1.37745 0.83596 0.75593 0.75413 0.75980 1.20887 1.21520 1.21611 1.22534 0.95682 1.00433 0.96232 1.20083 0.98661 0.94182 0.95560 1.21157 0.98377 0.94007 0.98253 1.21203 0.99322 0.99907 0.93621 1.21136 1.00511 0.94216 0.98568 1.21080 1.00399 0.94659 0.98035 1.21052 0.99400 0.99700 0.93402 0.93186 0.91983 0.91614 0.84160 0.93796 0.91670 0.92669 0.92890 0.91578 0.93811 0.91566 0.84935 0.86139 0.86408 0.86333 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.80 37.16 0.33 -1.40 16 2 C 0.12 1.61 2.82 -68.86 -0.19 1.41 16 3 H 0.05 0.63 7.29 -51.93 -0.38 0.25 16 4 N -0.67 -10.24 5.40 -99.78 -0.54 -10.78 16 5 C 0.08 1.48 3.25 -66.59 -0.22 1.26 16 6 H 0.03 0.60 7.43 -51.93 -0.39 0.21 16 7 C -0.12 -2.18 5.26 -25.50 -0.13 -2.32 16 8 C -0.11 -2.62 5.62 -24.97 -0.14 -2.76 16 9 C 0.04 0.90 2.40 -89.78 -0.22 0.68 16 10 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 11 C -0.59 -16.71 8.52 -34.44 -0.29 -17.00 16 12 H 0.05 1.33 7.78 -52.49 -0.41 0.92 16 13 C 0.02 0.54 5.35 -17.82 -0.10 0.45 16 14 N -0.92 -27.68 13.45 55.43 0.75 -26.93 16 15 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 C -0.11 -2.31 5.67 -25.07 -0.14 -2.45 16 20 C -0.08 -1.03 4.72 -104.62 -0.49 -1.52 16 21 C -0.10 -1.18 9.00 -39.58 -0.36 -1.54 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.62 16 24 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 25 C -0.12 -1.28 9.67 -39.59 -0.38 -1.67 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.88 6.02 -51.93 -0.31 0.57 16 29 H 0.34 5.06 7.57 -39.29 -0.30 4.76 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.18 6.57 -51.93 -0.34 0.84 16 32 H 0.05 1.37 8.04 -51.93 -0.42 0.95 16 33 H 0.05 1.30 6.47 -51.93 -0.34 0.97 16 34 H 0.27 8.11 5.40 -40.82 -0.22 7.89 16 35 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 37 H 0.13 1.62 7.71 -52.48 -0.40 1.22 16 38 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -29.78 322.20 -10.05 -39.84 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.50 Total: 4.46 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: -3.53 Total: -31.77 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.21 Total: -37.71 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.78 -10.05 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294994443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.444 kcal (2) G-P(sol) polarization free energy of solvation -29.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds