Wall clock time and date at job start Mon Mar 30 2020 06:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47202 * 2 1 4 4 N 1.46897 * 109.47115 * 120.00459 * 2 1 3 5 5 C 1.46899 * 110.99724 * 274.99676 * 4 2 1 6 6 H 1.08995 * 110.01926 * 326.39439 * 5 4 2 7 7 C 1.53882 * 110.03117 * 87.83161 * 5 4 2 8 8 C 1.54468 * 106.68100 * 119.44540 * 7 5 4 9 9 C 1.54886 * 104.10609 * 23.34148 * 8 7 5 10 10 H 1.09000 * 110.75738 * 80.70425 * 9 8 7 11 11 C 1.50700 * 110.75777 * 203.89600 * 9 8 7 12 12 H 1.08002 * 119.99770 * 116.06600 * 11 9 8 13 13 C 1.37871 * 120.00083 * 296.06279 * 11 9 8 14 14 N 1.31514 * 120.00147 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00278 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47228 * 179.97438 * 15 13 11 17 17 H 1.48501 * 109.46793 * 300.00001 * 15 13 11 18 18 H 1.48500 * 109.47000 * 60.00094 * 15 13 11 19 19 C 1.54263 * 110.03243 * 204.99778 * 5 4 2 20 20 C 1.50708 * 109.46823 * 240.00039 * 2 1 3 21 21 C 1.38231 * 120.00006 * 279.72580 * 20 2 1 22 22 C 1.38236 * 120.00285 * 179.81132 * 21 20 2 23 23 C 1.38237 * 119.99346 * 0.40086 * 22 21 20 24 24 C 1.38233 * 120.00100 * 359.85158 * 23 22 21 25 25 C 1.38231 * 120.00437 * 359.96179 * 24 23 22 26 26 H 1.09004 * 109.46770 * 59.99808 * 1 2 3 27 27 H 1.09001 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47360 * 300.00180 * 1 2 3 29 29 H 1.00897 * 111.00403 * 151.04315 * 4 2 1 30 30 H 1.08995 * 110.03081 * 238.56235 * 7 5 4 31 31 H 1.08991 * 110.03214 * 359.95743 * 7 5 4 32 32 H 1.09006 * 110.40348 * 264.75334 * 8 7 5 33 33 H 1.09000 * 110.66173 * 142.05708 * 8 7 5 34 34 H 0.97005 * 119.99661 * 359.97438 * 14 13 11 35 35 H 1.09001 * 110.49051 * 98.42782 * 19 5 4 36 36 H 1.08997 * 110.48864 * 335.78629 * 19 5 4 37 37 H 1.08008 * 120.00133 * 0.02562 * 21 20 2 38 38 H 1.07998 * 120.00415 * 180.22989 * 22 21 20 39 39 H 1.08001 * 120.00072 * 179.83650 * 23 22 21 40 40 H 1.08003 * 119.99949 * 179.97438 * 24 23 22 41 41 H 1.07999 * 120.00664 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3468 6 1 2.3403 1.2264 2.0098 7 6 0.7295 0.2427 3.0796 8 6 0.9987 -0.2426 4.5212 9 6 2.5031 0.0515 4.7437 10 1 2.6583 1.1001 4.9975 11 6 3.0698 -0.8446 5.8146 12 1 3.8391 -1.5612 5.5677 13 6 2.6061 -0.7496 7.1095 14 7 1.6690 0.1227 7.4101 15 14 3.3091 -1.8599 8.4372 16 1 2.6480 -1.5618 9.7330 17 1 3.0691 -3.2795 8.0734 18 1 4.7695 -1.6205 8.5606 19 6 3.1277 -0.2778 3.3651 20 6 2.0323 -0.7104 -1.2306 21 6 2.0720 -2.0918 -1.2633 22 6 2.5290 -2.7436 -2.3935 23 6 2.9541 -2.0137 -3.4877 24 6 2.9193 -0.6322 -3.4530 25 6 2.4587 0.0194 -2.3243 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 2.9172 -1.1206 1.0287 30 1 0.3304 1.2567 3.0989 31 1 0.0261 -0.4259 2.5834 32 1 0.8025 -1.3115 4.6052 33 1 0.3915 0.3148 5.2343 34 1 1.3042 0.6995 6.7208 35 1 4.0705 0.2540 3.2366 36 1 3.2777 -1.3524 3.2611 37 1 1.7426 -2.6620 -0.4072 38 1 2.5565 -3.8229 -2.4204 39 1 3.3137 -2.5228 -4.3698 40 1 3.2519 -0.0620 -4.3078 41 1 2.4319 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294994443.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:13 Heat of formation + Delta-G solvation = -10.864070 kcal Electronic energy + Delta-G solvation = -19086.588004 eV Core-core repulsion = 16350.325326 eV Total energy + Delta-G solvation = -2736.262678 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60578 -39.38006 -36.71886 -34.47963 -32.00033 -31.66356 -30.31019 -29.57110 -27.58270 -25.76081 -24.17099 -23.36540 -21.65654 -21.12774 -20.63241 -18.86745 -17.87092 -17.04538 -16.47594 -16.43096 -15.65016 -15.53877 -15.22124 -14.99207 -14.52470 -14.22454 -14.17381 -13.99131 -13.58624 -13.11686 -13.06311 -12.86992 -12.68182 -12.48820 -12.17559 -12.04400 -11.92102 -11.78604 -11.70373 -11.55629 -11.36294 -11.17836 -10.51046 -10.41513 -9.79732 -9.63041 -9.41357 -8.54111 -6.27044 0.44337 0.52598 1.53436 1.61438 1.80431 2.59887 2.88352 3.16694 3.23834 3.68963 3.87979 3.96739 4.04594 4.17351 4.20120 4.32411 4.35414 4.47367 4.58880 4.64906 4.69118 4.72073 4.81360 4.84055 4.90647 4.98967 5.07086 5.12701 5.15211 5.19450 5.22761 5.34328 5.35499 5.50288 5.58622 5.65064 5.68863 5.73401 6.13098 6.16017 6.23072 6.28271 6.46013 6.71320 7.52882 8.83977 Molecular weight = 259.16amu Principal moments of inertia in cm(-1) A = 0.035780 B = 0.003983 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.373489 B = 7027.468634 C = 7431.682170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.125 3.875 3 H 0.049 0.951 4 N -0.674 5.674 5 C 0.097 3.903 6 H 0.046 0.954 7 C -0.103 4.103 8 C -0.104 4.104 9 C 0.022 3.978 10 H -0.006 1.006 11 C -0.607 4.607 12 H 0.043 0.957 13 C -0.032 4.032 14 N -0.941 5.941 15 Si 1.111 2.889 16 H -0.285 1.285 17 H -0.273 1.273 18 H -0.272 1.272 19 C -0.101 4.101 20 C -0.098 4.098 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.126 4.126 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.342 0.658 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.263 0.737 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -1.833 -22.166 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.067 0.933 4 N -0.307 5.307 5 C -0.012 4.012 6 H 0.064 0.936 7 C -0.141 4.141 8 C -0.143 4.143 9 C 0.004 3.996 10 H 0.012 0.988 11 C -0.645 4.645 12 H 0.061 0.939 13 C -0.230 4.230 14 N -0.579 5.579 15 Si 0.934 3.066 16 H -0.210 1.210 17 H -0.198 1.198 18 H -0.197 1.197 19 C -0.139 4.139 20 C -0.098 4.098 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.144 4.144 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.162 0.838 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.033 -2.436 -20.405 20.550 hybrid contribution 0.738 1.070 -1.399 1.909 sum 0.705 -1.366 -21.804 21.858 Atomic orbital electron populations 1.21848 0.93456 1.02176 1.01693 1.20523 0.96351 0.94926 0.86631 0.93262 1.60736 1.33402 1.32850 1.03663 1.22085 0.95188 0.93561 0.90399 0.93648 1.22271 0.97053 1.00208 0.94614 1.22337 0.98259 0.98475 0.95180 1.19700 0.92729 0.94143 0.93064 0.98751 1.22351 1.23917 1.22214 0.96067 0.93899 1.27167 0.95128 0.99111 1.01597 1.70902 1.27302 1.22072 1.37606 0.83005 0.75829 0.74470 0.73329 1.21050 1.19821 1.19747 1.22375 0.96695 1.00181 0.94681 1.20009 0.99900 0.94307 0.95579 1.21168 0.99384 0.94080 0.98676 1.21445 0.98964 1.00924 0.93410 1.21486 0.99567 0.94410 0.99053 1.21415 0.99538 0.95044 0.98366 1.21255 0.99317 1.00415 0.93423 0.91538 0.92631 0.92500 0.83825 0.92525 0.90566 0.94786 0.95055 0.92633 0.93132 0.92217 0.86007 0.84616 0.83953 0.83949 0.85234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.80 71.98 0.63 -2.54 16 2 C 0.12 3.08 2.82 44.17 0.12 3.20 16 3 H 0.05 1.21 7.29 -2.39 -0.02 1.19 16 4 N -0.67 -19.70 5.40 -469.61 -2.54 -22.24 16 5 C 0.10 3.35 3.25 45.64 0.15 3.50 16 6 H 0.05 1.49 7.43 -2.39 -0.02 1.48 16 7 C -0.10 -3.85 5.26 31.39 0.17 -3.69 16 8 C -0.10 -4.98 5.62 31.74 0.18 -4.80 16 9 C 0.02 1.16 2.40 -10.25 -0.02 1.13 16 10 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 11 C -0.61 -34.98 8.52 25.60 0.22 -34.76 16 12 H 0.04 2.44 7.78 -2.91 -0.02 2.42 16 13 C -0.03 -1.86 5.35 84.65 0.45 -1.41 16 14 N -0.94 -58.29 13.45 21.45 0.29 -58.00 16 15 Si 1.11 51.30 29.90 68.60 2.05 53.35 16 16 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 17 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.10 -4.21 5.67 31.67 0.18 -4.03 16 20 C -0.10 -2.20 4.72 -19.86 -0.09 -2.30 16 21 C -0.11 -2.58 9.00 22.27 0.20 -2.38 16 22 C -0.13 -2.45 10.05 22.27 0.22 -2.22 16 23 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 25 C -0.13 -2.46 9.67 22.27 0.22 -2.24 16 26 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.43 6.02 -2.39 -0.01 1.42 16 29 H 0.34 9.83 7.57 -89.70 -0.68 9.15 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.68 6.57 -2.39 -0.02 2.67 16 32 H 0.03 1.72 8.04 -2.38 -0.02 1.71 16 33 H 0.03 1.60 6.47 -2.39 -0.02 1.58 16 34 H 0.26 16.28 5.40 -92.70 -0.50 15.78 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.54 7.86 -2.39 -0.02 2.52 16 37 H 0.12 2.93 7.71 -2.91 -0.02 2.90 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.13 2.16 8.04 -2.91 -0.02 2.13 16 Total: -1.00 -64.73 322.20 3.46 -61.28 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.59 Total: 21.91 kcal Atomic # 6 Polarization: -59.36 SS G_CDS: 3.07 Total: -56.29 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -2.25 Total: -80.24 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -64.73 3.46 -61.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294994443.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.411 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds