Wall clock time and date at job start Mon Mar 30 2020 06:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48502 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47259 * 299.99934 * 3 2 1 6 6 H 1.48494 * 109.47524 * 60.00250 * 3 2 1 7 7 C 1.39908 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00058 * 196.80611 * 7 2 1 9 9 C 1.41251 * 119.99932 * 17.07867 * 7 2 1 10 10 C 1.40706 * 120.22410 * 25.34081 * 9 7 2 11 11 C 1.37930 * 119.73095 * 179.97438 * 10 9 7 12 12 O 1.35947 * 119.89621 * 179.97438 * 11 10 9 13 13 C 1.39354 * 120.20652 * 359.97163 * 11 10 9 14 14 Br 1.89096 * 119.77126 * 180.02562 * 13 11 10 15 15 C 1.38511 * 120.45740 * 0.04985 * 13 11 10 16 16 C 1.37948 * 120.26164 * 359.68961 * 15 13 11 17 17 F 1.35103 * 120.10272 * 180.30701 * 16 15 13 18 18 H 0.97002 * 119.99539 * 359.97438 * 1 2 3 19 19 H 1.07991 * 120.13412 * 359.94759 * 10 9 7 20 20 H 0.96702 * 114.00225 * 89.99626 * 12 11 10 21 21 H 1.08011 * 119.86981 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3964 -1.2125 6 1 1.8840 2.3964 1.2124 7 6 2.0082 -1.2117 0.0005 8 1 3.0536 -1.2315 0.2710 9 6 1.3486 -2.4081 -0.3582 10 6 0.2196 -2.3704 -1.1971 11 6 -0.4163 -3.5449 -1.5414 12 8 -1.5077 -3.5123 -2.3513 13 6 0.0565 -4.7648 -1.0616 14 35 -0.8244 -6.3677 -1.5420 15 6 1.1669 -4.8114 -0.2349 16 6 1.8207 -3.6489 0.1171 17 9 2.9072 -3.6987 0.9186 18 1 -0.4849 0.8401 0.0004 19 1 -0.1477 -1.4256 -1.5696 20 1 -1.3004 -3.5785 -3.2935 21 1 1.5250 -5.7622 0.1318 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306164855.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:22 Heat of formation + Delta-G solvation = -79.613770 kcal Electronic energy + Delta-G solvation = -12004.400022 eV Core-core repulsion = 9419.617347 eV Total energy + Delta-G solvation = -2584.782675 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.42108 -38.29864 -35.70235 -33.89272 -30.95114 -28.93464 -28.14503 -25.15849 -21.69550 -20.89174 -18.13141 -16.66448 -16.13484 -15.63454 -14.86766 -14.45860 -14.08985 -13.15442 -12.89669 -12.52263 -12.07741 -11.79175 -11.41932 -11.26824 -10.90593 -10.48673 -10.38904 -9.82536 -9.51210 -9.39112 -9.25396 -7.78088 -7.43982 -7.08211 -4.72699 2.22415 2.46289 2.72569 2.91221 2.92824 2.99134 3.70238 4.15592 4.96322 5.25002 5.77249 5.89853 6.57015 6.66740 6.81523 6.92720 7.02197 7.43027 7.64872 7.66647 8.09210 8.39080 8.40906 8.60785 9.80800 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.042708 B = 0.007289 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.455038 B = 3840.356293 C = 4416.209575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.435 4.435 8 H 0.091 0.909 9 C 0.103 3.897 10 C -0.169 4.169 11 C 0.139 3.861 12 O -0.496 6.496 13 C -0.215 4.215 14 Br -0.095 7.095 15 C -0.078 4.078 16 C -0.031 4.031 17 F -0.157 7.157 18 H 0.289 0.711 19 H 0.139 0.861 20 H 0.375 0.625 21 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 -4.306 -3.887 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.149 4.149 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.109 0.891 9 C 0.099 3.901 10 C -0.190 4.190 11 C 0.092 3.908 12 O -0.305 6.305 13 C -0.295 4.295 14 Br -0.012 7.012 15 C -0.099 4.099 16 C -0.052 4.052 17 F -0.136 7.136 18 H 0.100 0.900 19 H 0.156 0.844 20 H 0.228 0.772 21 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.396 -4.677 -3.475 5.992 hybrid contribution 0.843 0.976 -0.103 1.294 sum -0.553 -3.701 -3.579 5.178 Atomic orbital electron populations 1.69827 1.07789 1.30312 1.31321 1.26076 0.94898 1.02048 0.91916 0.86068 0.81029 0.79746 0.78983 1.17940 1.19254 1.19488 1.19711 0.98407 0.90671 1.37426 0.89090 1.17547 0.91779 0.91170 0.89631 1.21313 0.98442 0.96677 1.02577 1.18003 0.87271 0.91026 0.94472 1.84823 1.30048 1.96017 1.19564 1.20979 1.03642 0.88974 1.15942 1.96354 1.79752 1.32288 1.92781 1.20245 0.94802 0.96732 0.98087 1.17623 0.91254 0.94184 1.02138 1.91300 1.52882 1.97231 1.72164 0.89977 0.84367 0.77168 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.58 10.97 55.55 0.61 -17.97 14 2 C 0.07 1.68 5.15 -17.34 -0.09 1.59 14 3 Si 0.92 17.31 29.59 -169.99 -5.03 12.28 14 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 6 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 7 C -0.43 -10.93 8.77 -37.81 -0.33 -11.26 14 8 H 0.09 2.24 7.74 -52.49 -0.41 1.83 14 9 C 0.10 2.63 5.57 -106.77 -0.59 2.03 14 10 C -0.17 -4.16 8.61 -38.76 -0.33 -4.49 14 11 C 0.14 3.15 6.68 -39.28 -0.26 2.89 14 12 O -0.50 -9.98 12.81 -19.57 -0.25 -10.23 14 13 C -0.22 -4.74 6.26 -39.07 -0.24 -4.99 14 14 Br -0.10 -1.77 33.13 -68.01 -2.25 -4.02 14 15 C -0.08 -1.75 9.73 -39.59 -0.39 -2.13 14 16 C -0.03 -0.76 7.30 -38.64 -0.28 -1.04 14 17 F -0.16 -3.79 16.72 2.25 0.04 -3.75 14 18 H 0.29 6.25 8.30 -40.82 -0.34 5.91 14 19 H 0.14 3.46 6.19 -52.49 -0.32 3.14 14 20 H 0.37 5.70 9.06 45.56 0.41 6.12 14 21 H 0.11 2.32 8.06 -52.48 -0.42 1.90 14 LS Contribution 221.95 15.07 3.34 3.34 Total: -1.00 -26.47 221.95 -5.94 -32.41 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 0.13 Total: 5.36 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.52 Total: -17.41 kcal Atomic # 7 Polarization: -18.58 SS G_CDS: 0.61 Total: -17.97 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.25 Total: -10.23 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Atomic # 35 Polarization: -1.77 SS G_CDS: -2.25 Total: -4.02 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -26.47 -5.94 -32.41 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306164855.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.206 kcal (2) G-P(sol) polarization free energy of solvation -26.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds