Wall clock time and date at job start Mon Mar 30 2020 06:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86804 * 119.99836 * 2 1 4 4 H 1.48503 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47329 * 300.00143 * 3 2 1 6 6 H 1.48501 * 109.47008 * 60.00682 * 3 2 1 7 7 C 1.39902 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00076 * 195.87800 * 7 2 1 9 9 C 1.41271 * 120.00262 * 16.14595 * 7 2 1 10 10 C 1.40801 * 120.19928 * 26.19855 * 9 7 2 11 11 C 1.36537 * 120.00829 * 179.97438 * 10 9 7 12 12 C 1.38851 * 120.42291 * 359.97438 * 11 10 9 13 13 F 1.35109 * 119.79421 * 180.02562 * 12 11 10 14 14 C 1.39348 * 120.40949 * 359.97438 * 12 11 10 15 15 O 1.35974 * 120.00817 * 180.02562 * 14 12 11 16 16 C 1.38129 * 119.98305 * 359.77630 * 14 12 11 17 17 Br 1.89098 * 120.21289 * 180.26120 * 16 14 12 18 18 H 0.97001 * 120.00298 * 359.97438 * 1 2 3 19 19 H 1.08001 * 119.99380 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.78508 * 180.02562 * 11 10 9 21 21 H 0.96694 * 114.00478 * 89.99448 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7026 1.3464 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8839 2.3964 1.2126 7 6 2.0082 -1.2116 -0.0005 8 1 3.0573 -1.2295 0.2554 9 6 1.3437 -2.4108 -0.3413 10 6 0.2129 -2.3803 -1.1797 11 6 -0.4260 -3.5418 -1.5070 12 6 0.0322 -4.7580 -1.0183 13 9 -0.6095 -5.8996 -1.3507 14 6 1.1502 -4.8086 -0.1881 15 8 1.5921 -6.0042 0.2854 16 6 1.8125 -3.6444 0.1495 17 35 3.3347 -3.7063 1.2697 18 1 -0.4851 0.8400 0.0004 19 1 -0.1490 -1.4381 -1.5640 20 1 -1.2927 -3.5143 -2.1507 21 1 2.2413 -6.4376 -0.2853 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306197174.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:13 Heat of formation + Delta-G solvation = -93.104501 kcal Electronic energy + Delta-G solvation = -12041.498273 eV Core-core repulsion = 9456.130596 eV Total energy + Delta-G solvation = -2585.367677 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.38238 -39.98503 -37.79910 -35.33044 -32.73544 -30.85201 -29.57553 -27.02845 -23.24579 -22.83579 -20.00003 -18.46575 -17.82945 -17.39109 -16.77495 -16.41657 -15.60555 -14.95155 -14.57819 -14.20410 -13.85593 -13.58167 -13.05730 -12.79196 -12.53064 -12.11249 -11.96776 -11.40067 -11.29768 -11.06550 -10.64779 -9.38769 -9.30631 -8.81308 -6.51884 0.53852 0.57646 1.21684 1.41936 1.46479 1.57384 2.18055 2.46753 3.29181 3.37851 3.88649 4.32833 4.63916 4.91651 5.13300 5.14820 5.34568 5.72388 5.76176 5.94867 6.37206 6.60032 6.69618 6.89045 8.15412 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.023159 B = 0.011710 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.742980 B = 2390.565782 C = 3523.678379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.259 1.259 6 H -0.266 1.266 7 C -0.455 4.455 8 H 0.096 0.904 9 C 0.108 3.892 10 C -0.153 4.153 11 C -0.105 4.105 12 C -0.082 4.082 13 F -0.161 7.161 14 C 0.134 3.866 15 O -0.495 6.495 16 C -0.228 4.228 17 Br -0.060 7.060 18 H 0.298 0.702 19 H 0.130 0.870 20 H 0.133 0.867 21 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -0.876 -0.768 4.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.183 1.183 6 H -0.191 1.191 7 C -0.482 4.482 8 H 0.114 0.886 9 C 0.103 3.897 10 C -0.173 4.173 11 C -0.125 4.125 12 C -0.103 4.103 13 F -0.140 7.140 14 C 0.087 3.913 15 O -0.306 6.306 16 C -0.309 4.309 17 Br 0.025 6.975 18 H 0.109 0.891 19 H 0.147 0.853 20 H 0.151 0.849 21 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.560 -0.681 0.120 4.612 hybrid contribution -0.097 0.183 -0.604 0.638 sum 4.463 -0.498 -0.484 4.516 Atomic orbital electron populations 1.69825 1.09067 1.31684 1.32065 1.26834 0.95501 1.04699 0.90789 0.85110 0.79645 0.75682 0.79234 1.17865 1.18336 1.19054 1.20096 0.98507 0.91102 1.38517 0.88638 1.17714 0.91523 0.91472 0.89011 1.20998 0.98498 0.97169 1.00598 1.20673 1.00427 0.90842 1.00534 1.17584 1.00158 0.82406 1.10154 1.91298 1.81386 1.49120 1.92187 1.17868 0.93476 0.85089 0.94899 1.84735 1.63536 1.31855 1.50511 1.21873 1.02179 0.95301 1.11566 1.96258 1.36640 1.98908 1.65722 0.89098 0.85266 0.84877 0.74340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.35 10.96 21.82 0.24 -37.11 14 2 C 0.04 1.82 5.16 85.24 0.44 2.26 14 3 Si 0.98 34.14 29.59 68.60 2.03 36.17 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 14 5 H -0.26 -8.54 7.11 99.48 0.71 -7.84 14 6 H -0.27 -8.98 7.11 99.48 0.71 -8.28 14 7 C -0.46 -22.01 8.44 23.42 0.20 -21.81 14 8 H 0.10 4.51 6.90 -2.91 -0.02 4.49 14 9 C 0.11 5.36 5.56 -21.28 -0.12 5.24 14 10 C -0.15 -7.31 8.63 22.50 0.19 -7.11 14 11 C -0.11 -4.70 9.94 22.02 0.22 -4.48 14 12 C -0.08 -3.74 7.33 22.68 0.17 -3.57 14 13 F -0.16 -7.05 17.10 44.97 0.77 -6.28 14 14 C 0.13 6.09 6.69 22.51 0.15 6.24 14 15 O -0.49 -19.65 12.69 -93.25 -1.18 -20.83 14 16 C -0.23 -10.77 6.29 22.87 0.14 -10.62 14 17 Br -0.06 -2.44 31.56 -20.37 -0.64 -3.09 14 18 H 0.30 12.32 8.30 -92.71 -0.77 11.55 14 19 H 0.13 6.21 6.21 -2.91 -0.02 6.20 14 20 H 0.13 5.15 8.06 -2.91 -0.02 5.13 14 21 H 0.40 11.88 9.06 -74.06 -0.67 11.21 14 Total: -1.00 -53.84 219.81 3.22 -50.62 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.62 Total: 14.37 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 1.39 Total: -33.85 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.24 Total: -37.11 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -1.18 Total: -20.83 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.77 Total: -6.28 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 2.03 Total: 36.17 kcal Atomic # 35 Polarization: -2.44 SS G_CDS: -0.64 Total: -3.09 kcal Total: -53.84 3.22 -50.62 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306197174.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.486 kcal (2) G-P(sol) polarization free energy of solvation -53.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds