Wall clock time and date at job start Mon Mar 30 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09000 * 109.47017 * 54.99395 * 10 9 7 12 12 O 1.42907 * 109.46675 * 294.99903 * 10 9 7 13 13 C 1.50695 * 109.47310 * 174.99934 * 10 9 7 14 14 C 1.34501 * 125.78035 * 264.99919 * 13 10 9 15 15 C 1.41390 * 106.84710 * 180.02562 * 14 13 10 16 16 C 1.34621 * 106.83981 * 0.02562 * 15 14 13 17 17 Br 1.89097 * 125.80298 * 179.97438 * 16 15 14 18 18 O 1.34313 * 108.39510 * 359.73416 * 16 15 14 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 0.96700 * 114.00238 * 299.99679 * 12 10 9 23 23 H 1.08001 * 126.57335 * 0.02562 * 14 13 10 24 24 H 1.08013 * 126.58045 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9292 -3.5590 0.8318 12 8 2.9875 -3.6487 -1.2315 13 6 1.4957 -4.9642 0.1075 14 6 1.2588 -5.6346 1.2493 15 6 0.5294 -6.7943 0.8997 16 6 0.3645 -6.7635 -0.4360 17 35 -0.5402 -8.0634 -1.4692 18 8 0.9472 -5.6498 -0.9094 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.4415 -3.7366 -2.0247 23 1 1.5667 -5.3429 2.2425 24 1 0.1729 -7.5583 1.5749 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306219379.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:07 Heat of formation + Delta-G solvation = -59.492821 kcal Electronic energy + Delta-G solvation = -12067.189702 eV Core-core repulsion = 9606.739842 eV Total energy + Delta-G solvation = -2460.449860 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.70869 -38.38199 -35.04234 -34.30635 -33.24573 -31.84328 -29.52791 -26.35605 -23.47716 -23.00241 -21.48033 -19.24682 -18.17789 -17.38073 -16.98934 -16.42466 -16.10738 -15.36909 -14.35611 -14.28212 -13.95084 -13.88485 -13.15918 -12.82258 -12.74298 -12.55424 -12.32403 -12.09700 -11.72143 -11.31516 -11.08522 -10.85479 -10.61924 -9.41633 -8.22444 -6.33045 -0.18639 0.41632 1.41806 1.42715 1.46164 1.56773 2.19335 2.42694 3.11013 3.50940 3.76862 3.92969 4.38942 4.47223 4.58654 4.70539 4.81565 5.30973 5.32053 5.44578 5.73460 5.87629 6.13096 6.70660 6.82121 7.35969 8.89346 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.052140 B = 0.004823 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.891000 B = 5804.170093 C = 5911.724328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.200 3.800 11 H 0.131 0.869 12 O -0.558 6.558 13 C -0.020 4.020 14 C -0.213 4.213 15 C -0.144 4.144 16 C -0.064 4.064 17 Br 0.066 6.934 18 O -0.177 6.177 19 H 0.264 0.736 20 H 0.011 0.989 21 H -0.003 1.003 22 H 0.382 0.618 23 H 0.178 0.822 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 -17.081 -0.264 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.567 4.567 8 H 0.083 0.917 9 C -0.031 4.031 10 C 0.141 3.859 11 H 0.149 0.851 12 O -0.364 6.364 13 C -0.073 4.073 14 C -0.233 4.233 15 C -0.165 4.165 16 C -0.191 4.191 17 Br 0.149 6.851 18 O -0.074 6.074 19 H 0.073 0.927 20 H 0.029 0.971 21 H 0.015 0.985 22 H 0.230 0.770 23 H 0.195 0.805 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.642 -17.309 -0.550 17.329 hybrid contribution -0.368 1.097 -0.134 1.165 sum -1.010 -16.211 -0.684 16.257 Atomic orbital electron populations 1.70105 1.07774 1.27828 1.51583 1.25951 0.95733 1.03365 0.94703 0.85349 0.79091 0.78619 0.77686 1.18586 1.20655 1.20283 1.21469 0.93631 0.91211 1.50436 0.91672 1.19662 0.94224 0.92876 0.96385 1.20758 0.91760 0.84634 0.88758 0.85116 1.86447 1.37850 1.96046 1.16024 1.24183 0.99767 0.96716 0.86601 1.21968 1.05237 0.96176 0.99877 1.22064 1.01300 1.00275 0.92873 1.24326 1.08279 0.91852 0.94623 1.96773 1.72758 1.43426 1.72140 1.84006 1.56281 1.29769 1.37382 0.92726 0.97056 0.98512 0.76989 0.80487 0.79307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.29 21.45 0.28 -55.49 14 2 C 0.00 0.02 5.46 84.66 0.46 0.48 14 3 Si 0.97 43.78 29.54 68.60 2.03 45.81 14 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 14 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 14 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 14 7 C -0.53 -29.29 8.88 25.60 0.23 -29.07 14 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 14 9 C 0.01 0.30 4.64 29.85 0.14 0.43 14 10 C 0.20 8.18 3.37 29.85 0.10 8.28 14 11 H 0.13 5.00 8.14 -2.39 -0.02 4.98 14 12 O -0.56 -22.72 13.07 -144.53 -1.89 -24.61 14 13 C -0.02 -0.74 6.20 24.83 0.15 -0.59 14 14 C -0.21 -6.59 10.81 22.19 0.24 -6.35 14 15 C -0.14 -3.91 10.86 22.22 0.24 -3.67 14 16 C -0.06 -1.94 7.80 66.99 0.52 -1.42 14 17 Br 0.07 1.53 34.09 -20.37 -0.69 0.84 14 18 O -0.18 -6.45 10.52 1.41 0.01 -6.44 14 19 H 0.26 14.83 8.31 -92.70 -0.77 14.06 14 20 H 0.01 0.61 8.14 -2.38 -0.02 0.59 14 21 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 14 22 H 0.38 13.92 8.93 -74.06 -0.66 13.26 14 23 H 0.18 4.57 8.06 -2.91 -0.02 4.54 14 24 H 0.19 3.69 8.06 -2.90 -0.02 3.67 14 Total: -1.00 -63.68 245.38 2.39 -61.29 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.56 Total: 10.50 kcal Atomic # 6 Polarization: -33.98 SS G_CDS: 2.09 Total: -31.89 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.28 Total: -55.49 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.87 Total: -31.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.69 Total: 0.84 kcal Total: -63.68 2.39 -61.29 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219379.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.797 kcal (2) G-P(sol) polarization free energy of solvation -63.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds