Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46835 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47233 * 29.99866 * 3 2 1 6 6 H 1.48498 * 109.47045 * 150.00392 * 3 2 1 7 7 C 1.37876 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46576 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47731 * 304.99816 * 10 9 7 12 12 O 1.42895 * 109.47126 * 65.00445 * 10 9 7 13 13 C 1.50712 * 109.46797 * 185.00016 * 10 9 7 14 14 C 1.34500 * 125.77654 * 100.32959 * 13 10 9 15 15 C 1.41395 * 106.84702 * 180.14064 * 14 13 10 16 16 C 1.34626 * 106.83185 * 359.60034 * 15 14 13 17 17 Br 1.89098 * 125.79674 * 180.21941 * 16 15 14 18 18 O 1.34309 * 108.40372 * 0.24634 * 16 15 14 19 19 H 0.97005 * 119.99853 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47117 * 60.00500 * 9 7 2 21 21 H 1.08996 * 109.47259 * 299.99708 * 9 7 2 22 22 H 0.96699 * 114.00553 * 59.99784 * 12 10 9 23 23 H 1.07997 * 126.57807 * 0.02562 * 14 13 10 24 24 H 1.08002 * 126.58661 * 179.87383 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5553 -0.8424 12 8 2.9875 -3.6541 1.2205 13 6 1.4958 -4.9637 -0.1244 14 6 1.3451 -5.6801 -1.2527 15 6 0.5762 -6.8179 -0.9162 16 6 0.3103 -6.7331 0.4008 17 35 -0.6830 -7.9852 1.4115 18 8 0.8699 -5.6079 0.8748 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.4415 -3.7456 2.0134 23 1 1.7350 -5.4326 -2.2290 24 1 0.2658 -7.6062 -1.5860 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306219380.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = -39.026962 kcal Electronic energy + Delta-G solvation = -12067.124377 eV Core-core repulsion = 9607.561983 eV Total energy + Delta-G solvation = -2459.562394 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.40788 -36.72997 -33.10833 -32.89216 -31.99226 -30.19897 -27.91822 -24.54394 -21.75009 -21.66068 -20.09672 -17.66656 -16.33118 -15.92387 -15.44250 -14.66258 -14.41317 -13.72820 -12.94588 -12.70589 -12.61515 -12.34439 -11.34067 -11.22476 -10.93353 -10.88376 -10.63033 -10.60069 -10.24856 -9.76264 -9.27519 -9.22868 -8.46408 -8.09634 -6.08188 -4.11397 0.98445 1.71369 2.71428 3.29859 3.36206 3.40799 3.53414 4.41145 4.97577 5.09063 5.20602 5.30943 5.71657 5.86774 5.99637 6.11050 6.35602 6.57335 7.14968 7.38609 7.48729 7.87834 8.19914 8.29760 8.94516 9.52948 11.03004 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.050461 B = 0.004875 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.749553 B = 5742.697784 C = 5890.406606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.064 0.936 9 C -0.002 4.002 10 C 0.186 3.814 11 H 0.122 0.878 12 O -0.550 6.550 13 C 0.015 3.985 14 C -0.224 4.224 15 C -0.148 4.148 16 C -0.049 4.049 17 Br 0.035 6.965 18 O -0.156 6.156 19 H 0.262 0.738 20 H 0.031 0.969 21 H 0.025 0.975 22 H 0.374 0.626 23 H 0.156 0.844 24 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -16.322 0.715 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.082 0.918 9 C -0.039 4.039 10 C 0.127 3.873 11 H 0.139 0.861 12 O -0.355 6.355 13 C -0.039 4.039 14 C -0.243 4.243 15 C -0.170 4.170 16 C -0.177 4.177 17 Br 0.119 6.881 18 O -0.053 6.053 19 H 0.072 0.928 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.221 0.779 23 H 0.174 0.826 24 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.325 -16.504 0.994 16.587 hybrid contribution -0.097 0.976 -0.077 0.984 sum -1.421 -15.527 0.917 15.619 Atomic orbital electron populations 1.69976 1.06127 1.26893 1.50384 1.25029 0.94883 0.99484 0.95113 0.86489 0.79852 0.82937 0.78140 1.20604 1.21231 1.19671 1.21060 0.93353 0.89934 1.51082 0.91813 1.19829 0.93962 0.91350 0.98798 1.21160 0.92700 0.85057 0.88418 0.86058 1.86492 1.37432 1.95953 1.15580 1.24573 0.96416 0.96788 0.86078 1.21580 1.06585 0.96140 1.00034 1.21641 1.01631 1.00568 0.93196 1.23663 1.08035 0.92083 0.93896 1.96751 1.68943 1.48639 1.73765 1.84057 1.54148 1.29298 1.37808 0.92847 0.95072 0.95667 0.77895 0.82612 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 14 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 14 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 14 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 14 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 14 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 14 7 C -0.52 -14.16 8.88 -34.44 -0.31 -14.47 14 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 14 9 C 0.00 -0.06 4.64 -27.88 -0.13 -0.19 14 10 C 0.19 3.79 3.38 -27.88 -0.09 3.69 14 11 H 0.12 2.34 8.13 -51.93 -0.42 1.92 14 12 O -0.55 -11.16 13.08 -37.34 -0.49 -11.65 14 13 C 0.01 0.27 6.18 -35.62 -0.22 0.05 14 14 C -0.22 -3.63 10.80 -39.70 -0.43 -4.06 14 15 C -0.15 -2.20 10.86 -39.66 -0.43 -2.63 14 16 C -0.05 -0.79 7.80 29.45 0.23 -0.56 14 17 Br 0.04 0.45 34.09 -68.01 -2.32 -1.87 14 18 O -0.16 -2.89 10.58 3.45 0.04 -2.86 14 19 H 0.26 7.31 8.31 -40.82 -0.34 6.97 14 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 14 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 14 22 H 0.37 6.69 8.97 45.56 0.41 7.10 14 23 H 0.16 2.17 8.06 -52.49 -0.42 1.74 14 24 H 0.15 1.80 8.06 -52.49 -0.42 1.37 14 LS Contribution 245.45 15.07 3.70 3.70 Total: -1.00 -30.02 245.45 -6.08 -36.09 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -1.25 Total: 2.56 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.48 Total: -16.67 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.45 Total: -14.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.32 Total: -1.87 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.02 -6.08 -36.09 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219380.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.934 kcal (2) G-P(sol) polarization free energy of solvation -30.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds