Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46835 * 270.00089 * 3 2 1 5 5 H 1.48496 * 109.47233 * 29.99866 * 3 2 1 6 6 H 1.48498 * 109.47045 * 150.00392 * 3 2 1 7 7 C 1.37876 * 119.99633 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99633 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00073 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46576 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.47731 * 304.99816 * 10 9 7 12 12 O 1.42895 * 109.47126 * 65.00445 * 10 9 7 13 13 C 1.50712 * 109.46797 * 185.00016 * 10 9 7 14 14 C 1.34500 * 125.77654 * 100.32959 * 13 10 9 15 15 C 1.41395 * 106.84702 * 180.14064 * 14 13 10 16 16 C 1.34626 * 106.83185 * 359.60034 * 15 14 13 17 17 Br 1.89098 * 125.79674 * 180.21941 * 16 15 14 18 18 O 1.34309 * 108.40372 * 0.24634 * 16 15 14 19 19 H 0.97005 * 119.99853 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47117 * 60.00500 * 9 7 2 21 21 H 1.08996 * 109.47259 * 299.99708 * 9 7 2 22 22 H 0.96699 * 114.00553 * 59.99784 * 12 10 9 23 23 H 1.07997 * 126.57807 * 0.02562 * 14 13 10 24 24 H 1.08002 * 126.58661 * 179.87383 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9294 -3.5553 -0.8424 12 8 2.9875 -3.6541 1.2205 13 6 1.4958 -4.9637 -0.1244 14 6 1.3451 -5.6801 -1.2527 15 6 0.5762 -6.8179 -0.9162 16 6 0.3103 -6.7331 0.4008 17 35 -0.6830 -7.9852 1.4115 18 8 0.8699 -5.6079 0.8748 19 1 -0.4850 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.4415 -3.7456 2.0134 23 1 1.7350 -5.4326 -2.2290 24 1 0.2658 -7.6062 -1.5860 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306219380.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = -59.533990 kcal Electronic energy + Delta-G solvation = -12068.013629 eV Core-core repulsion = 9607.561983 eV Total energy + Delta-G solvation = -2460.451645 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 259.983 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.70893 -38.38062 -35.03743 -34.30483 -33.24193 -31.84805 -29.53226 -26.35679 -23.47277 -23.00792 -21.47920 -19.23609 -18.17404 -17.38500 -16.98989 -16.43201 -16.10486 -15.37895 -14.35443 -14.26352 -13.94965 -13.88723 -13.14485 -12.84784 -12.74441 -12.52165 -12.32566 -12.10989 -11.72301 -11.33458 -11.07719 -10.84939 -10.60961 -9.42554 -8.22180 -6.33011 -0.18485 0.41490 1.42264 1.43621 1.46123 1.55656 2.20000 2.42721 3.11148 3.52280 3.75680 3.92826 4.38702 4.47278 4.58497 4.70751 4.81494 5.30638 5.32336 5.44717 5.73331 5.88114 6.13116 6.70395 6.81975 7.36006 8.89407 Molecular weight = 259.98amu Principal moments of inertia in cm(-1) A = 0.050461 B = 0.004875 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.749553 B = 5742.697784 C = 5890.406606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.065 0.935 9 C 0.005 3.995 10 C 0.200 3.800 11 H 0.132 0.868 12 O -0.558 6.558 13 C -0.021 4.021 14 C -0.212 4.212 15 C -0.144 4.144 16 C -0.064 4.064 17 Br 0.065 6.935 18 O -0.177 6.177 19 H 0.264 0.736 20 H 0.010 0.990 21 H -0.004 1.004 22 H 0.382 0.618 23 H 0.179 0.821 24 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.712 -17.044 0.143 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.083 0.917 9 C -0.032 4.032 10 C 0.141 3.859 11 H 0.150 0.850 12 O -0.363 6.363 13 C -0.073 4.073 14 C -0.231 4.231 15 C -0.165 4.165 16 C -0.191 4.191 17 Br 0.149 6.851 18 O -0.075 6.075 19 H 0.073 0.927 20 H 0.028 0.972 21 H 0.015 0.985 22 H 0.230 0.770 23 H 0.196 0.804 24 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.738 -17.239 0.421 17.260 hybrid contribution -0.346 1.079 0.133 1.141 sum -1.084 -16.160 0.554 16.206 Atomic orbital electron populations 1.70103 1.07790 1.27889 1.51523 1.25957 0.95734 1.03387 0.94682 0.85396 0.78546 0.78239 0.78567 1.19537 1.20967 1.18905 1.21439 0.93632 0.91226 1.50555 0.91652 1.19655 0.94249 0.92968 0.96310 1.20755 0.91716 0.84676 0.88764 0.85031 1.86448 1.37844 1.95998 1.16049 1.24186 0.98662 0.97242 0.87254 1.21985 1.05243 0.95790 1.00105 1.22070 1.00556 1.00723 0.93184 1.24337 1.07800 0.91751 0.95179 1.96773 1.68051 1.46981 1.73340 1.84011 1.54760 1.30372 1.38362 0.92730 0.97196 0.98525 0.76997 0.80362 0.79280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 14 2 C 0.00 0.02 5.46 84.65 0.46 0.48 14 3 Si 0.97 43.81 29.54 68.60 2.03 45.83 14 4 H -0.27 -11.72 7.11 99.48 0.71 -11.02 14 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 14 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 14 7 C -0.53 -29.41 8.88 25.60 0.23 -29.18 14 8 H 0.07 3.53 7.74 -2.91 -0.02 3.50 14 9 C 0.01 0.28 4.64 29.85 0.14 0.42 14 10 C 0.20 8.18 3.38 29.85 0.10 8.29 14 11 H 0.13 5.02 8.13 -2.39 -0.02 5.00 14 12 O -0.56 -22.69 13.08 -146.96 -1.92 -24.62 14 13 C -0.02 -0.77 6.18 24.83 0.15 -0.62 14 14 C -0.21 -6.49 10.80 22.19 0.24 -6.25 14 15 C -0.14 -3.90 10.86 22.22 0.24 -3.66 14 16 C -0.06 -1.94 7.80 66.99 0.52 -1.42 14 17 Br 0.07 1.53 34.09 -20.37 -0.69 0.83 14 18 O -0.18 -6.51 10.58 -0.99 -0.01 -6.53 14 19 H 0.26 14.91 8.31 -92.70 -0.77 14.14 14 20 H 0.01 0.53 8.14 -2.39 -0.02 0.51 14 21 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 14 22 H 0.38 13.92 8.97 -74.06 -0.66 13.26 14 23 H 0.18 4.50 8.06 -2.91 -0.02 4.48 14 24 H 0.19 3.67 8.06 -2.91 -0.02 3.65 14 Total: -1.00 -63.93 245.45 2.33 -61.60 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.56 Total: 10.49 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 2.09 Total: -31.95 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.66 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.93 Total: -31.14 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.69 Total: 0.83 kcal Total: -63.93 2.33 -61.60 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219380.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.066 kcal (2) G-P(sol) polarization free energy of solvation -63.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds