Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48492 * 109.47059 * 269.99834 * 3 2 1 5 5 H 1.48500 * 109.47041 * 30.00127 * 3 2 1 6 6 H 1.48505 * 109.47139 * 149.99547 * 3 2 1 7 7 C 1.39880 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99888 * 196.01857 * 7 2 1 9 9 C 1.41171 * 120.00107 * 16.28994 * 7 2 1 10 10 C 1.40841 * 120.17538 * 26.19391 * 9 7 2 11 11 C 1.36400 * 119.97660 * 179.97438 * 10 9 7 12 12 C 1.39277 * 120.35976 * 359.97438 * 11 10 9 13 13 O 1.35726 * 119.81413 * 180.02562 * 12 11 10 14 14 C 1.39454 * 120.36432 * 0.02562 * 12 11 10 15 15 F 1.35098 * 119.99544 * 179.97438 * 14 12 11 16 16 C 1.37720 * 120.00600 * 359.70018 * 14 12 11 17 17 Br 1.89098 * 120.17596 * 180.27633 * 16 14 12 18 18 H 0.96999 * 119.99871 * 4.99442 * 1 2 3 19 19 H 1.07999 * 120.00621 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.81545 * 180.02562 * 11 10 9 21 21 H 0.96695 * 113.99608 * 90.00283 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0463 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4401 0.7002 7 6 2.0083 -1.2114 0.0005 8 1 3.0569 -1.2295 0.2587 9 6 1.3449 -2.4096 -0.3418 10 6 0.2157 -2.3781 -1.1829 11 6 -0.4219 -3.5383 -1.5116 12 6 0.0378 -4.7577 -1.0201 13 8 -0.6048 -5.9055 -1.3546 14 6 1.1545 -4.8058 -0.1862 15 9 1.5937 -5.9927 0.2866 16 6 1.8131 -3.6442 0.1506 17 35 3.3325 -3.7047 1.2747 18 1 -0.4850 0.8369 -0.0731 19 1 -0.1453 -1.4357 -1.5675 20 1 -1.2874 -3.5112 -2.1571 21 1 -0.2674 -6.3253 -2.1577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306269604.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -77.316383 kcal Electronic energy + Delta-G solvation = -12044.749942 eV Core-core repulsion = 9460.066890 eV Total energy + Delta-G solvation = -2584.683053 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.90348 -38.15239 -36.04162 -33.54079 -30.90544 -29.12430 -28.06859 -25.11541 -21.37539 -21.15628 -17.89952 -17.44223 -15.84216 -15.43799 -15.00206 -14.91271 -14.03085 -13.37577 -12.71813 -12.70327 -12.02236 -11.73505 -11.41911 -11.28913 -10.99451 -10.51169 -10.22456 -9.70000 -9.55569 -9.30679 -8.98618 -7.62867 -7.51411 -7.12118 -4.73511 2.29086 2.39130 2.92044 2.94043 2.96932 2.98555 3.71757 4.17797 5.07776 5.20257 5.45485 6.09477 6.44096 6.58315 6.83227 6.99528 7.18510 7.37009 7.56327 7.75450 8.13506 8.34865 8.44503 8.65199 9.80707 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.011730 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.494181 B = 2386.430524 C = 3500.301130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.430 4.430 8 H 0.097 0.903 9 C 0.143 3.857 10 C -0.150 4.150 11 C -0.088 4.088 12 C -0.071 4.071 13 O -0.490 6.490 14 C 0.136 3.864 15 F -0.147 7.147 16 C -0.231 4.231 17 Br -0.081 7.081 18 H 0.289 0.711 19 H 0.132 0.868 20 H 0.109 0.891 21 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -1.178 -1.472 3.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.457 4.457 8 H 0.115 0.885 9 C 0.139 3.861 10 C -0.170 4.170 11 C -0.108 4.108 12 C -0.118 4.118 13 O -0.297 6.297 14 C 0.114 3.886 15 F -0.125 7.125 16 C -0.312 4.312 17 Br 0.003 6.997 18 H 0.100 0.900 19 H 0.150 0.850 20 H 0.127 0.873 21 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.237 -0.949 -0.423 3.400 hybrid contribution 0.214 0.407 -0.595 0.752 sum 3.451 -0.542 -1.018 3.638 Atomic orbital electron populations 1.69828 1.07789 1.30630 1.31436 1.26054 0.94842 1.01968 0.91697 0.86150 0.80703 0.79545 0.79740 1.18831 1.19915 1.17958 1.19888 0.98356 0.90445 1.37006 0.88515 1.17293 0.90622 0.90253 0.87982 1.21021 0.98217 0.97261 1.00475 1.20656 0.98970 0.91727 0.99431 1.17744 0.98439 0.86199 1.09417 1.84892 1.59784 1.37790 1.47188 1.17558 0.93733 0.79537 0.97750 1.91380 1.89035 1.45227 1.86893 1.21367 1.02117 0.95111 1.12581 1.96302 1.38405 1.98965 1.66016 0.89988 0.85016 0.87252 0.79112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.12 10.97 55.54 0.61 -17.51 14 2 C 0.08 1.72 5.15 -17.34 -0.09 1.63 14 3 Si 0.92 17.10 29.59 -169.99 -5.03 12.07 14 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 14 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 14 7 C -0.43 -10.46 8.43 -37.85 -0.32 -10.78 14 8 H 0.10 2.31 6.90 -52.48 -0.36 1.95 14 9 C 0.14 3.59 5.56 -106.78 -0.59 2.99 14 10 C -0.15 -3.56 8.62 -39.26 -0.34 -3.90 14 11 C -0.09 -1.96 9.91 -39.86 -0.39 -2.36 14 12 C -0.07 -1.63 6.73 -38.74 -0.26 -1.89 14 13 O -0.49 -9.99 13.35 -18.88 -0.25 -10.24 14 14 C 0.14 3.26 7.27 -39.32 -0.29 2.97 14 15 F -0.15 -3.41 16.56 2.25 0.04 -3.37 14 16 C -0.23 -5.63 6.28 -38.76 -0.24 -5.88 14 17 Br -0.08 -1.76 31.68 -68.01 -2.15 -3.92 14 18 H 0.29 6.07 8.30 -40.82 -0.34 5.73 14 19 H 0.13 3.12 6.21 -52.49 -0.33 2.80 14 20 H 0.11 2.14 8.06 -52.49 -0.42 1.71 14 21 H 0.36 5.47 9.06 45.56 0.41 5.88 14 LS Contribution 219.97 15.07 3.31 3.31 Total: -1.00 -26.42 219.97 -5.83 -32.25 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 0.17 Total: 4.62 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -2.53 Total: -17.21 kcal Atomic # 7 Polarization: -18.12 SS G_CDS: 0.61 Total: -17.51 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.25 Total: -10.24 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 35 Polarization: -1.76 SS G_CDS: -2.15 Total: -3.92 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -26.42 -5.83 -32.25 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269604.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.066 kcal (2) G-P(sol) polarization free energy of solvation -26.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds