Wall clock time and date at job start Mon Mar 30 2020 06:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48492 * 109.47059 * 269.99834 * 3 2 1 5 5 H 1.48500 * 109.47041 * 30.00127 * 3 2 1 6 6 H 1.48505 * 109.47139 * 149.99547 * 3 2 1 7 7 C 1.39880 * 119.99705 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99888 * 196.01857 * 7 2 1 9 9 C 1.41171 * 120.00107 * 16.28994 * 7 2 1 10 10 C 1.40841 * 120.17538 * 26.19391 * 9 7 2 11 11 C 1.36400 * 119.97660 * 179.97438 * 10 9 7 12 12 C 1.39277 * 120.35976 * 359.97438 * 11 10 9 13 13 O 1.35726 * 119.81413 * 180.02562 * 12 11 10 14 14 C 1.39454 * 120.36432 * 0.02562 * 12 11 10 15 15 F 1.35098 * 119.99544 * 179.97438 * 14 12 11 16 16 C 1.37720 * 120.00600 * 359.70018 * 14 12 11 17 17 Br 1.89098 * 120.17596 * 180.27633 * 16 14 12 18 18 H 0.96999 * 119.99871 * 4.99442 * 1 2 3 19 19 H 1.07999 * 120.00621 * 359.97438 * 10 9 7 20 20 H 1.08001 * 119.81545 * 180.02562 * 11 10 9 21 21 H 0.96695 * 113.99608 * 90.00283 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0463 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5406 1.4401 0.7002 7 6 2.0083 -1.2114 0.0005 8 1 3.0569 -1.2295 0.2587 9 6 1.3449 -2.4096 -0.3418 10 6 0.2157 -2.3781 -1.1829 11 6 -0.4219 -3.5383 -1.5116 12 6 0.0378 -4.7577 -1.0201 13 8 -0.6048 -5.9055 -1.3546 14 6 1.1545 -4.8058 -0.1862 15 9 1.5937 -5.9927 0.2866 16 6 1.8131 -3.6442 0.1506 17 35 3.3325 -3.7047 1.2747 18 1 -0.4850 0.8369 -0.0731 19 1 -0.1453 -1.4357 -1.5675 20 1 -1.2874 -3.5112 -2.1571 21 1 -0.2674 -6.3253 -2.1577 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306269604.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:11 Heat of formation + Delta-G solvation = -93.361219 kcal Electronic energy + Delta-G solvation = -12045.445699 eV Core-core repulsion = 9460.066890 eV Total energy + Delta-G solvation = -2585.378809 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.72342 -39.89769 -37.74008 -35.27891 -32.67512 -30.91169 -29.85594 -26.89513 -23.16927 -22.93395 -19.68311 -19.13086 -17.59674 -17.22760 -16.70940 -16.68877 -15.74698 -15.00752 -14.48967 -14.41906 -13.71462 -13.49930 -13.12756 -12.90028 -12.61465 -12.17305 -11.88095 -11.43682 -11.25700 -11.01615 -10.74400 -9.41509 -9.32919 -8.83122 -6.54757 0.53993 0.57035 1.13937 1.41752 1.48243 1.54995 2.17704 2.45631 3.31602 3.44042 3.74960 4.36628 4.63149 4.82282 5.11157 5.22779 5.40027 5.63180 5.76550 5.97814 6.34920 6.58937 6.66519 7.07142 8.13189 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.011730 C = 0.007997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.494181 B = 2386.430524 C = 3500.301130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.043 3.957 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.454 4.454 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.162 4.162 11 C -0.086 4.086 12 C -0.066 4.066 13 O -0.495 6.495 14 C 0.117 3.883 15 F -0.146 7.146 16 C -0.252 4.252 17 Br -0.065 7.065 18 H 0.299 0.701 19 H 0.129 0.871 20 H 0.137 0.863 21 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 -0.636 -1.868 3.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.176 4.176 3 Si 0.803 3.197 4 H -0.179 1.179 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.481 4.481 8 H 0.112 0.888 9 C 0.114 3.886 10 C -0.182 4.182 11 C -0.105 4.105 12 C -0.113 4.113 13 O -0.304 6.304 14 C 0.096 3.904 15 F -0.125 7.125 16 C -0.334 4.334 17 Br 0.019 6.981 18 H 0.111 0.889 19 H 0.147 0.853 20 H 0.155 0.845 21 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.174 -0.436 -0.834 3.310 hybrid contribution 0.188 0.140 -0.484 0.538 sum 3.362 -0.295 -1.318 3.623 Atomic orbital electron populations 1.69833 1.08975 1.32147 1.31348 1.26813 0.95498 1.04606 0.90717 0.85154 0.79129 0.75389 0.80067 1.17887 1.19084 1.18203 1.20066 0.98441 0.91312 1.38239 0.88813 1.17616 0.91448 0.90832 0.88695 1.21074 0.98520 0.97760 1.00830 1.20895 0.99388 0.90970 0.99238 1.17851 0.97662 0.87136 1.08679 1.84798 1.59715 1.37028 1.48903 1.17782 0.94518 0.79553 0.98571 1.91369 1.89118 1.45045 1.86989 1.21604 1.03144 0.95285 1.13317 1.96265 1.37409 1.98943 1.65468 0.88938 0.85348 0.84528 0.76046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.96 10.97 21.82 0.24 -36.72 14 2 C 0.04 1.92 5.15 85.23 0.44 2.35 14 3 Si 0.98 34.08 29.59 68.60 2.03 36.11 14 4 H -0.25 -8.42 7.11 99.48 0.71 -7.72 14 5 H -0.27 -8.84 7.11 99.48 0.71 -8.13 14 6 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 7 C -0.45 -22.07 8.43 23.39 0.20 -21.87 14 8 H 0.09 4.48 6.90 -2.91 -0.02 4.46 14 9 C 0.12 5.95 5.56 -21.26 -0.12 5.84 14 10 C -0.16 -7.65 8.62 22.48 0.19 -7.45 14 11 C -0.09 -3.69 9.91 22.09 0.22 -3.47 14 12 C -0.07 -2.93 6.73 22.81 0.15 -2.78 14 13 O -0.50 -19.01 13.35 -90.49 -1.21 -20.22 14 14 C 0.12 5.55 7.27 22.44 0.16 5.72 14 15 F -0.15 -6.69 16.56 44.97 0.74 -5.95 14 16 C -0.25 -12.30 6.28 22.80 0.14 -12.16 14 17 Br -0.07 -2.81 31.68 -20.37 -0.65 -3.45 14 18 H 0.30 12.28 8.30 -92.71 -0.77 11.51 14 19 H 0.13 6.07 6.21 -2.91 -0.02 6.05 14 20 H 0.14 5.01 8.06 -2.91 -0.02 4.99 14 21 H 0.38 10.68 9.06 -74.06 -0.67 10.01 14 Total: -1.00 -54.33 219.97 3.17 -51.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.62 Total: 12.90 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 1.39 Total: -33.83 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.24 Total: -36.72 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -1.21 Total: -20.22 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.74 Total: -5.95 kcal Atomic # 14 Polarization: 34.08 SS G_CDS: 2.03 Total: 36.11 kcal Atomic # 35 Polarization: -2.81 SS G_CDS: -0.65 Total: -3.45 kcal Total: -54.33 3.17 -51.16 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306269604.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.202 kcal (2) G-P(sol) polarization free energy of solvation -54.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds