Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30861 * 1 3 3 Si 1.86798 * 119.99895 * 2 1 4 4 H 1.48503 * 109.47181 * 240.00213 * 3 2 1 5 5 H 1.48500 * 109.47434 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47334 * 120.00287 * 3 2 1 7 7 C 1.39908 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99922 * 196.75876 * 7 2 1 9 9 C 1.41279 * 120.00161 * 17.02945 * 7 2 1 10 10 C 1.40800 * 120.22655 * 25.37150 * 9 7 2 11 11 C 1.36505 * 120.00572 * 179.97438 * 10 9 7 12 12 C 1.38784 * 120.48492 * 0.02562 * 11 10 9 13 13 Br 1.89102 * 119.77108 * 179.97438 * 12 11 10 14 14 C 1.39039 * 120.46106 * 359.97131 * 12 11 10 15 15 O 1.35978 * 120.00934 * 180.02562 * 14 12 11 16 16 C 1.38421 * 119.97990 * 359.76532 * 14 12 11 17 17 F 1.35098 * 120.23900 * 180.24934 * 16 14 12 18 18 H 0.96999 * 119.99974 * 0.02562 * 1 2 3 19 19 H 1.08009 * 119.99770 * 0.02621 * 10 9 7 20 20 H 1.08005 * 119.76208 * 180.02562 * 11 10 9 21 21 H 0.96701 * 113.99614 * 90.00030 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0082 -1.2116 -0.0005 8 1 3.0538 -1.2316 0.2692 9 6 1.3483 -2.4082 -0.3594 10 6 0.2183 -2.3703 -1.1985 11 6 -0.4155 -3.5292 -1.5428 12 6 0.0450 -4.7505 -1.0711 13 35 -0.8489 -6.3435 -1.5602 14 6 1.1590 -4.8109 -0.2414 15 8 1.6026 -6.0125 0.2151 16 6 1.8196 -3.6480 0.1155 17 9 2.9056 -3.7011 0.9173 18 1 -0.4850 0.8400 -0.0004 19 1 -0.1465 -1.4242 -1.5706 20 1 -1.2817 -3.4956 -2.1871 21 1 2.2540 -6.4358 -0.3607 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306299460.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = -94.921341 kcal Electronic energy + Delta-G solvation = -12044.804062 eV Core-core repulsion = 9459.357601 eV Total energy + Delta-G solvation = -2585.446461 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.29023 -39.97495 -37.82242 -35.52632 -32.63064 -30.70568 -30.04333 -26.97659 -23.26967 -22.87763 -20.02916 -18.35229 -17.86305 -17.60460 -16.59673 -16.42489 -15.67281 -15.03510 -14.71201 -14.27714 -13.65393 -13.57454 -13.11267 -12.81537 -12.50675 -12.16346 -12.07525 -11.53157 -11.30580 -11.04404 -10.91982 -9.43121 -9.35130 -8.86099 -6.60161 0.46986 0.61288 1.01883 1.37821 1.45984 1.51363 2.14387 2.43068 3.25911 3.31311 3.94041 4.36401 4.63124 4.88067 5.04208 5.15342 5.35705 5.63132 5.79529 5.86881 6.31550 6.52039 6.60750 6.87178 8.09277 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.043814 B = 0.007199 C = 0.006286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.916434 B = 3888.320606 C = 4453.178917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.040 3.960 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.471 4.471 8 H 0.081 0.919 9 C 0.080 3.920 10 C -0.163 4.163 11 C -0.062 4.062 12 C -0.222 4.222 13 Br -0.056 7.056 14 C 0.135 3.865 15 O -0.495 6.495 16 C -0.087 4.087 17 F -0.160 7.160 18 H 0.301 0.699 19 H 0.129 0.871 20 H 0.133 0.867 21 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.119 -4.240 -4.514 6.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.179 4.179 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.498 4.498 8 H 0.099 0.901 9 C 0.076 3.924 10 C -0.184 4.184 11 C -0.082 4.082 12 C -0.302 4.302 13 Br 0.028 6.972 14 C 0.087 3.913 15 O -0.306 6.306 16 C -0.109 4.109 17 F -0.139 7.139 18 H 0.112 0.888 19 H 0.147 0.853 20 H 0.151 0.849 21 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -2.018 -4.581 -4.182 6.523 hybrid contribution 1.016 0.749 0.110 1.267 sum -1.002 -3.832 -4.072 5.680 Atomic orbital electron populations 1.69799 1.08982 1.32067 1.31213 1.26852 0.95658 1.04697 0.90702 0.85103 0.78864 0.74698 0.80332 1.17886 1.18219 1.18649 1.19856 0.98364 0.92042 1.39504 0.90118 1.17969 0.92890 0.91186 0.90395 1.20936 0.98663 0.97823 1.00930 1.20550 0.98928 0.90297 0.98381 1.21312 1.03707 0.92420 1.12807 1.96372 1.77108 1.31948 1.91812 1.17829 0.93951 0.83927 0.95586 1.84737 1.63338 1.31223 1.51302 1.18199 0.92679 0.94733 1.05261 1.91245 1.53036 1.97228 1.72421 0.88773 0.85311 0.84893 0.74287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.69 10.96 21.82 0.24 -37.45 14 2 C 0.04 1.86 5.15 85.24 0.44 2.30 14 3 Si 0.99 34.85 29.59 68.60 2.03 36.88 14 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 14 5 H -0.26 -8.36 7.11 99.48 0.71 -7.65 14 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 14 7 C -0.47 -24.27 8.77 23.42 0.21 -24.06 14 8 H 0.08 4.13 7.74 -2.91 -0.02 4.11 14 9 C 0.08 4.15 5.57 -21.26 -0.12 4.03 14 10 C -0.16 -7.89 8.63 22.49 0.19 -7.69 14 11 C -0.06 -2.65 9.70 22.00 0.21 -2.44 14 12 C -0.22 -9.46 6.26 22.59 0.14 -9.31 14 13 Br -0.06 -1.94 33.13 -20.37 -0.67 -2.62 14 14 C 0.13 6.12 6.69 22.51 0.15 6.27 14 15 O -0.49 -19.63 12.68 -93.30 -1.18 -20.81 14 16 C -0.09 -4.44 7.32 22.96 0.17 -4.28 14 17 F -0.16 -8.22 16.57 44.97 0.75 -7.48 14 18 H 0.30 12.57 8.30 -92.71 -0.77 11.80 14 19 H 0.13 6.24 6.19 -2.91 -0.02 6.22 14 20 H 0.13 4.96 8.06 -2.91 -0.02 4.94 14 21 H 0.40 11.88 9.06 -74.06 -0.67 11.21 14 Total: -1.00 -55.71 221.70 3.17 -52.54 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.62 Total: 14.11 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 1.39 Total: -35.18 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.24 Total: -37.45 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.18 Total: -20.81 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.75 Total: -7.48 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Atomic # 35 Polarization: -1.94 SS G_CDS: -0.67 Total: -2.62 kcal Total: -55.71 3.17 -52.54 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306299460.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.378 kcal (2) G-P(sol) polarization free energy of solvation -55.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds