Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30843 * 1 3 3 Si 1.86805 * 119.99849 * 2 1 4 4 H 1.48501 * 109.46982 * 87.83034 * 3 2 1 5 5 H 1.48496 * 109.47366 * 207.82731 * 3 2 1 6 6 H 1.48497 * 109.47224 * 327.83387 * 3 2 1 7 7 C 1.39930 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99744 * 330.77573 * 7 2 1 9 9 C 1.41291 * 120.00176 * 150.77702 * 7 2 1 10 10 C 1.40681 * 120.23243 * 145.20758 * 9 7 2 11 11 C 1.37988 * 119.74478 * 179.97438 * 10 9 7 12 12 O 1.35938 * 119.89444 * 180.02562 * 11 10 9 13 13 C 1.39225 * 120.21575 * 0.02562 * 11 10 9 14 14 C 1.38474 * 120.47543 * 359.97438 * 13 11 10 15 15 Br 1.89100 * 119.87211 * 179.97438 * 14 13 11 16 16 C 1.38075 * 120.25539 * 359.73530 * 14 13 11 17 17 F 1.35100 * 120.11708 * 180.26023 * 16 14 13 18 18 H 0.97001 * 120.00563 * 359.97438 * 1 2 3 19 19 H 1.08004 * 120.12825 * 359.95380 * 10 9 7 20 20 H 0.96702 * 113.99712 * 89.99028 * 12 11 10 21 21 H 1.08001 * 119.76055 * 179.97438 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4440 2.0730 1.3991 5 1 3.5622 1.4275 -0.6535 6 1 1.4635 2.6390 -0.7453 7 6 2.0082 -1.2118 -0.0005 8 1 1.5713 -2.0878 0.4557 9 6 3.2862 -1.2894 -0.5979 10 6 4.2752 -2.1257 -0.0488 11 6 5.5198 -2.1942 -0.6408 12 8 6.4775 -3.0017 -0.1130 13 6 5.7979 -1.4388 -1.7768 14 6 4.8311 -0.6126 -2.3248 15 35 5.2275 0.4064 -3.8677 16 6 3.5773 -0.5337 -1.7519 17 9 2.6346 0.2693 -2.2920 18 1 -0.4851 0.8400 0.0004 19 1 4.0613 -2.7117 0.8328 20 1 6.4752 -3.9002 -0.4707 21 1 6.7746 -1.4977 -2.2339 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306353246.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = -85.295246 kcal Electronic energy + Delta-G solvation = -12248.742499 eV Core-core repulsion = 9663.713457 eV Total energy + Delta-G solvation = -2585.029042 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -49.72950 -40.14786 -37.44789 -35.62038 -33.31595 -31.26147 -29.52928 -27.39692 -23.17404 -22.87203 -20.16667 -18.66408 -18.19113 -17.29608 -17.26216 -16.41602 -15.84146 -14.95027 -14.82036 -14.44900 -14.02411 -13.57291 -13.39884 -13.12428 -12.54392 -12.40138 -11.82435 -11.62724 -11.35376 -11.20757 -11.01773 -9.71356 -9.26672 -9.08414 -6.64909 0.25082 0.39338 0.60223 1.25222 1.31944 1.37489 2.06140 2.28900 3.02754 3.45995 3.62515 4.29085 4.40467 4.64375 4.92518 5.12402 5.27632 5.53159 5.54978 5.80263 6.07587 6.40882 6.56986 7.00594 7.96004 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.021904 B = 0.013109 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.980599 B = 2135.500324 C = 3105.904804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.069 3.931 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.256 1.256 6 H -0.265 1.265 7 C -0.484 4.484 8 H 0.080 0.920 9 C 0.066 3.934 10 C -0.210 4.210 11 C 0.145 3.855 12 O -0.502 6.502 13 C -0.207 4.207 14 C -0.071 4.071 15 Br -0.048 7.048 16 C -0.022 4.022 17 F -0.146 7.146 18 H 0.298 0.702 19 H 0.130 0.870 20 H 0.409 0.591 21 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.479 -0.311 -5.052 10.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.152 4.152 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.180 1.180 6 H -0.190 1.190 7 C -0.511 4.511 8 H 0.098 0.902 9 C 0.062 3.938 10 C -0.230 4.230 11 C 0.099 3.901 12 O -0.315 6.315 13 C -0.228 4.228 14 C -0.151 4.151 15 Br 0.037 6.963 16 C -0.044 4.044 17 F -0.125 7.125 18 H 0.109 0.891 19 H 0.148 0.852 20 H 0.268 0.732 21 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.432 0.669 -5.323 10.851 hybrid contribution -0.631 0.082 0.080 0.641 sum 8.801 0.750 -5.242 10.272 Atomic orbital electron populations 1.69765 1.09255 1.32079 1.32100 1.26724 0.95049 1.03946 0.89512 0.85692 0.81415 0.77341 0.78102 1.20160 1.17993 1.18996 1.19271 0.99083 0.98013 1.34760 0.90188 1.17583 0.93702 0.92413 0.90151 1.21419 0.91708 1.07037 1.02797 1.18038 0.87137 0.93570 0.91349 1.84709 1.52965 1.27105 1.66715 1.20753 0.99517 1.03245 0.99271 1.21507 0.94907 1.02213 0.96455 1.96519 1.94499 1.70922 1.34392 1.17655 0.86663 1.02779 0.97316 1.91051 1.64619 1.71490 1.85317 0.89073 0.85219 0.73210 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.88 13.93 21.82 0.30 -42.58 14 2 C 0.07 3.59 4.73 85.25 0.40 3.99 14 3 Si 0.95 43.59 25.38 68.60 1.74 45.34 14 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 14 5 H -0.26 -12.13 5.31 99.48 0.53 -11.60 14 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 14 7 C -0.48 -25.80 9.39 23.43 0.22 -25.58 14 8 H 0.08 4.44 8.06 -2.91 -0.02 4.41 14 9 C 0.07 3.22 4.87 -21.26 -0.10 3.11 14 10 C -0.21 -8.87 9.72 22.81 0.22 -8.65 14 11 C 0.14 5.35 6.69 22.45 0.15 5.50 14 12 O -0.50 -14.87 13.50 -92.85 -1.25 -16.13 14 13 C -0.21 -7.65 9.72 22.56 0.22 -7.43 14 14 C -0.07 -2.93 6.22 22.29 0.14 -2.80 14 15 Br -0.05 -1.70 33.26 -20.37 -0.68 -2.38 14 16 C -0.02 -1.05 4.99 22.90 0.11 -0.94 14 17 F -0.15 -7.27 12.23 44.97 0.55 -6.72 14 18 H 0.30 14.26 8.30 -92.71 -0.77 13.49 14 19 H 0.13 5.15 8.06 -2.91 -0.02 5.13 14 20 H 0.41 7.52 9.06 -74.06 -0.67 6.85 14 21 H 0.15 4.60 8.06 -2.91 -0.02 4.58 14 Total: -1.00 -57.03 215.67 2.46 -54.57 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: 0.43 Total: 0.68 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 1.36 Total: -32.79 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.30 Total: -42.58 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -1.25 Total: -16.13 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.55 Total: -6.72 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.74 Total: 45.34 kcal Atomic # 35 Polarization: -1.70 SS G_CDS: -0.68 Total: -2.38 kcal Total: -57.03 2.46 -54.57 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306353246.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.721 kcal (2) G-P(sol) polarization free energy of solvation -57.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds