Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86808 * 120.00104 * 2 1 4 4 H 1.48495 * 109.46865 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.46991 * 29.99985 * 3 2 1 6 6 H 1.48500 * 109.47035 * 149.99876 * 3 2 1 7 7 C 1.39930 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00097 * 195.42679 * 7 2 1 9 9 C 1.41354 * 120.00042 * 15.42145 * 7 2 1 10 10 C 1.40751 * 120.21026 * 25.31901 * 9 7 2 11 11 C 1.37810 * 119.83836 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.86209 * 180.02562 * 11 10 9 13 13 C 1.38839 * 120.28210 * 359.97438 * 11 10 9 14 14 C 1.38994 * 120.43766 * 359.97438 * 13 11 10 15 15 O 1.35915 * 119.92767 * 179.97438 * 14 13 11 16 16 C 1.38287 * 120.14558 * 0.27605 * 14 13 11 17 17 Br 1.89106 * 120.13521 * 179.74527 * 16 14 13 18 18 H 0.97006 * 120.00380 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.08055 * 0.02562 * 10 9 7 20 20 H 1.08002 * 119.78465 * 179.97438 * 13 11 10 21 21 H 0.96705 * 113.99946 * 89.99820 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0588 -1.2285 0.2494 9 6 1.3394 -2.4141 -0.3244 10 6 0.1891 -2.3880 -1.1352 11 6 -0.4570 -3.5647 -1.4468 12 9 -1.5608 -3.5402 -2.2254 13 6 0.0222 -4.7754 -0.9649 14 6 1.1577 -4.8147 -0.1643 15 8 1.6175 -6.0056 0.3023 16 6 1.8171 -3.6443 0.1638 17 35 3.3577 -3.6975 1.2591 18 1 -0.4851 0.8401 -0.0004 19 1 -0.1862 -1.4481 -1.5121 20 1 -0.4906 -5.6927 -1.2138 21 1 2.2552 -6.4375 -0.2826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306364815.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = -78.701357 kcal Electronic energy + Delta-G solvation = -12019.026161 eV Core-core repulsion = 9434.283052 eV Total energy + Delta-G solvation = -2584.743110 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.85512 -38.34689 -35.95919 -33.51773 -30.83200 -29.25705 -27.42092 -25.60620 -21.58165 -20.86722 -18.37753 -16.62157 -15.81423 -15.42121 -14.86057 -14.69318 -14.47411 -13.67731 -13.11213 -12.70758 -11.86515 -11.59680 -11.42273 -11.08516 -10.61753 -10.48778 -10.30907 -9.87270 -9.53175 -9.39680 -8.88100 -7.72653 -7.36730 -7.05145 -4.75774 2.29044 2.40693 2.94975 2.98758 3.00182 3.04760 3.73903 4.19789 4.88840 5.17961 5.65702 6.09316 6.46516 6.66170 6.86976 6.92295 7.19067 7.42219 7.52300 7.77708 8.17237 8.31605 8.48796 8.53757 9.85695 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.013331 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.661764 B = 2099.899857 C = 3502.049666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.433 4.433 8 H 0.098 0.902 9 C 0.153 3.847 10 C -0.197 4.197 11 C 0.127 3.873 12 F -0.160 7.160 13 C -0.301 4.301 14 C 0.181 3.819 15 O -0.498 6.498 16 C -0.226 4.226 17 Br -0.087 7.087 18 H 0.288 0.712 19 H 0.139 0.861 20 H 0.113 0.887 21 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -2.597 -0.356 5.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.116 0.884 9 C 0.148 3.852 10 C -0.218 4.218 11 C 0.107 3.893 12 F -0.139 7.139 13 C -0.322 4.322 14 C 0.134 3.866 15 O -0.307 6.307 16 C -0.306 4.306 17 Br -0.002 7.002 18 H 0.100 0.900 19 H 0.157 0.843 20 H 0.131 0.869 21 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.490 -2.327 0.528 5.085 hybrid contribution -0.073 0.583 -0.724 0.932 sum 4.417 -1.744 -0.196 4.753 Atomic orbital electron populations 1.69794 1.07863 1.30273 1.31845 1.26078 0.94851 1.02034 0.91744 0.86128 0.80628 0.79471 0.79698 1.18863 1.19923 1.17999 1.19889 0.98234 0.90101 1.37856 0.88388 1.17016 0.89906 0.90826 0.87489 1.21338 1.00046 0.96302 1.04099 1.17454 0.84279 0.94642 0.92876 1.91363 1.51794 1.97556 1.73157 1.20356 1.03703 0.96517 1.11666 1.17483 0.92391 0.83529 0.93181 1.84765 1.63446 1.33484 1.48966 1.21897 1.00820 0.95813 1.12090 1.96276 1.36950 1.98976 1.68011 0.90044 0.84334 0.86873 0.76624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.77 10.87 55.55 0.60 -18.16 14 2 C 0.07 1.73 5.18 -17.35 -0.09 1.64 14 3 Si 0.92 17.47 29.59 -169.99 -5.03 12.44 14 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 6 H -0.26 -4.86 7.11 56.52 0.40 -4.45 14 7 C -0.43 -10.69 8.46 -37.76 -0.32 -11.01 14 8 H 0.10 2.35 6.88 -52.48 -0.36 1.99 14 9 C 0.15 3.86 5.57 -106.83 -0.60 3.26 14 10 C -0.20 -4.95 8.66 -38.79 -0.34 -5.28 14 11 C 0.13 3.02 7.28 -39.52 -0.29 2.73 14 12 F -0.16 -3.63 17.26 2.25 0.04 -3.59 14 13 C -0.30 -6.74 9.97 -39.08 -0.39 -7.13 14 14 C 0.18 4.02 6.68 -39.28 -0.26 3.76 14 15 O -0.50 -9.54 12.82 -19.47 -0.25 -9.79 14 16 C -0.23 -5.34 6.29 -38.63 -0.24 -5.58 14 17 Br -0.09 -1.80 31.53 -68.01 -2.14 -3.94 14 18 H 0.29 6.30 8.30 -40.82 -0.34 5.96 14 19 H 0.14 3.56 6.12 -52.49 -0.32 3.24 14 20 H 0.11 2.30 8.06 -52.49 -0.42 1.88 14 21 H 0.38 5.39 9.06 45.56 0.41 5.81 14 LS Contribution 219.90 15.07 3.31 3.31 Total: -1.00 -26.37 219.90 -5.82 -32.18 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: 0.17 Total: 5.16 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -2.52 Total: -17.61 kcal Atomic # 7 Polarization: -18.77 SS G_CDS: 0.60 Total: -18.16 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.25 Total: -9.79 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.04 Total: -3.59 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Atomic # 35 Polarization: -1.80 SS G_CDS: -2.14 Total: -3.94 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -26.37 -5.82 -32.18 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364815.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.519 kcal (2) G-P(sol) polarization free energy of solvation -26.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds