Wall clock time and date at job start Mon Mar 30 2020 06:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86808 * 120.00104 * 2 1 4 4 H 1.48495 * 109.46865 * 270.00110 * 3 2 1 5 5 H 1.48497 * 109.46991 * 29.99985 * 3 2 1 6 6 H 1.48500 * 109.47035 * 149.99876 * 3 2 1 7 7 C 1.39930 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00097 * 195.42679 * 7 2 1 9 9 C 1.41354 * 120.00042 * 15.42145 * 7 2 1 10 10 C 1.40751 * 120.21026 * 25.31901 * 9 7 2 11 11 C 1.37810 * 119.83836 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.86209 * 180.02562 * 11 10 9 13 13 C 1.38839 * 120.28210 * 359.97438 * 11 10 9 14 14 C 1.38994 * 120.43766 * 359.97438 * 13 11 10 15 15 O 1.35915 * 119.92767 * 179.97438 * 14 13 11 16 16 C 1.38287 * 120.14558 * 0.27605 * 14 13 11 17 17 Br 1.89106 * 120.13521 * 179.74527 * 16 14 13 18 18 H 0.97006 * 120.00380 * 0.02562 * 1 2 3 19 19 H 1.07995 * 120.08055 * 0.02562 * 10 9 7 20 20 H 1.08002 * 119.78465 * 179.97438 * 13 11 10 21 21 H 0.96705 * 113.99946 * 89.99820 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0588 -1.2285 0.2494 9 6 1.3394 -2.4141 -0.3244 10 6 0.1891 -2.3880 -1.1352 11 6 -0.4570 -3.5647 -1.4468 12 9 -1.5608 -3.5402 -2.2254 13 6 0.0222 -4.7754 -0.9649 14 6 1.1577 -4.8147 -0.1643 15 8 1.6175 -6.0056 0.3023 16 6 1.8171 -3.6443 0.1638 17 35 3.3577 -3.6975 1.2591 18 1 -0.4851 0.8401 -0.0004 19 1 -0.1862 -1.4481 -1.5121 20 1 -0.4906 -5.6927 -1.2138 21 1 2.2552 -6.4375 -0.2826 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306364815.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:15 Heat of formation + Delta-G solvation = -94.746716 kcal Electronic energy + Delta-G solvation = -12019.721940 eV Core-core repulsion = 9434.283052 eV Total energy + Delta-G solvation = -2585.438889 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.68993 -40.06264 -37.65239 -35.27797 -32.60281 -31.03691 -29.20051 -27.41797 -23.36223 -22.67204 -20.11137 -18.38174 -17.52856 -17.20820 -16.56656 -16.47236 -16.27660 -15.36541 -14.75611 -14.48410 -13.59360 -13.32279 -13.06712 -12.72806 -12.30959 -12.20592 -11.99048 -11.52720 -11.26383 -11.12683 -10.59052 -9.54178 -9.15914 -8.80203 -6.60846 0.47112 0.65039 1.27544 1.39797 1.47503 1.54212 2.16082 2.44462 3.22609 3.35206 3.87517 4.36092 4.61694 4.86729 5.11147 5.21041 5.40699 5.57912 5.69395 5.97322 6.36179 6.58261 6.66451 6.95030 8.13932 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.018957 B = 0.013331 C = 0.007993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.661764 B = 2099.899857 C = 3502.049666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.037 3.963 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.457 4.457 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.222 4.222 11 C 0.123 3.877 12 F -0.157 7.157 13 C -0.303 4.303 14 C 0.190 3.810 15 O -0.495 6.495 16 C -0.247 4.247 17 Br -0.063 7.063 18 H 0.297 0.703 19 H 0.124 0.876 20 H 0.135 0.865 21 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.327 -2.710 -0.114 5.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.484 4.484 8 H 0.118 0.882 9 C 0.126 3.874 10 C -0.243 4.243 11 C 0.103 3.897 12 F -0.136 7.136 13 C -0.324 4.324 14 C 0.143 3.857 15 O -0.308 6.308 16 C -0.327 4.327 17 Br 0.021 6.979 18 H 0.108 0.892 19 H 0.142 0.858 20 H 0.153 0.847 21 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.278 -2.472 0.759 5.877 hybrid contribution -0.308 0.503 -0.775 0.973 sum 4.970 -1.970 -0.015 5.346 Atomic orbital electron populations 1.69836 1.09288 1.31642 1.32130 1.26922 0.95485 1.05016 0.90707 0.85113 0.79251 0.75142 0.79923 1.18220 1.19092 1.17658 1.20113 0.98454 0.90904 1.38926 0.88236 1.17312 0.90284 0.91941 0.87892 1.21283 1.01161 0.96306 1.05554 1.17582 0.84286 0.94926 0.92904 1.91361 1.51578 1.97575 1.73049 1.20584 1.03815 0.96713 1.11331 1.17500 0.91955 0.84209 0.92042 1.84697 1.64213 1.32197 1.49648 1.22166 1.02050 0.95874 1.12660 1.96255 1.35428 1.98927 1.67272 0.89226 0.85790 0.84680 0.73715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.33 10.87 21.82 0.24 -39.09 14 2 C 0.04 1.73 5.18 85.25 0.44 2.17 14 3 Si 0.99 35.14 29.59 68.60 2.03 37.17 14 4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14 5 H -0.27 -9.08 7.11 99.48 0.71 -8.38 14 6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14 7 C -0.46 -22.57 8.46 23.45 0.20 -22.37 14 8 H 0.10 4.73 6.88 -2.91 -0.02 4.71 14 9 C 0.13 6.64 5.57 -21.29 -0.12 6.52 14 10 C -0.22 -11.32 8.66 22.78 0.20 -11.13 14 11 C 0.12 5.81 7.28 22.31 0.16 5.97 14 12 F -0.16 -7.07 17.26 44.97 0.78 -6.29 14 13 C -0.30 -13.15 9.97 22.60 0.23 -12.92 14 14 C 0.19 8.14 6.68 22.46 0.15 8.29 14 15 O -0.50 -17.65 12.82 -92.59 -1.19 -18.83 14 16 C -0.25 -11.48 6.29 22.89 0.14 -11.33 14 17 Br -0.06 -2.54 31.53 -20.37 -0.64 -3.18 14 18 H 0.30 12.98 8.30 -92.70 -0.77 12.21 14 19 H 0.12 6.58 6.12 -2.91 -0.02 6.56 14 20 H 0.14 5.17 8.06 -2.91 -0.02 5.15 14 21 H 0.40 10.20 9.06 -74.05 -0.67 9.53 14 Total: -1.00 -54.75 219.90 3.23 -51.51 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.62 Total: 13.52 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 1.40 Total: -34.80 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.24 Total: -39.09 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -1.19 Total: -18.83 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.78 Total: -6.29 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 35 Polarization: -2.54 SS G_CDS: -0.64 Total: -3.18 kcal Total: -54.75 3.23 -51.51 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306364815.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.234 kcal (2) G-P(sol) polarization free energy of solvation -54.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds