Wall clock time and date at job start Mon Mar 30 2020 06:45:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30826 * 1
3 3 Si 1.86808 * 120.00104 * 2 1
4 4 H 1.48495 * 109.46865 * 270.00110 * 3 2 1
5 5 H 1.48497 * 109.46991 * 29.99985 * 3 2 1
6 6 H 1.48500 * 109.47035 * 149.99876 * 3 2 1
7 7 C 1.39930 * 120.00161 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00097 * 195.42679 * 7 2 1
9 9 C 1.41354 * 120.00042 * 15.42145 * 7 2 1
10 10 C 1.40751 * 120.21026 * 25.31901 * 9 7 2
11 11 C 1.37810 * 119.83836 * 180.02562 * 10 9 7
12 12 F 1.35099 * 119.86209 * 180.02562 * 11 10 9
13 13 C 1.38839 * 120.28210 * 359.97438 * 11 10 9
14 14 C 1.38994 * 120.43766 * 359.97438 * 13 11 10
15 15 O 1.35915 * 119.92767 * 179.97438 * 14 13 11
16 16 C 1.38287 * 120.14558 * 0.27605 * 14 13 11
17 17 Br 1.89106 * 120.13521 * 179.74527 * 16 14 13
18 18 H 0.97006 * 120.00380 * 0.02562 * 1 2 3
19 19 H 1.07995 * 120.08055 * 0.02562 * 10 9 7
20 20 H 1.08002 * 119.78465 * 179.97438 * 13 11 10
21 21 H 0.96705 * 113.99946 * 89.99820 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2423 1.6178 0.0000
4 1 2.4898 2.0464 -1.4001
5 1 1.4398 2.6527 0.7000
6 1 3.5399 1.4402 0.7001
7 6 2.0079 -1.2118 0.0005
8 1 3.0588 -1.2285 0.2494
9 6 1.3394 -2.4141 -0.3244
10 6 0.1891 -2.3880 -1.1352
11 6 -0.4570 -3.5647 -1.4468
12 9 -1.5608 -3.5402 -2.2254
13 6 0.0222 -4.7754 -0.9649
14 6 1.1577 -4.8147 -0.1643
15 8 1.6175 -6.0056 0.3023
16 6 1.8171 -3.6443 0.1638
17 35 3.3577 -3.6975 1.2591
18 1 -0.4851 0.8401 -0.0004
19 1 -0.1862 -1.4481 -1.5121
20 1 -0.4906 -5.6927 -1.2138
21 1 2.2552 -6.4375 -0.2826
RHF calculation, no. of doubly occupied orbitals= 35
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000306364815.mol2 21
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:45:15
Heat of formation + Delta-G solvation = -94.746716 kcal
Electronic energy + Delta-G solvation = -12019.721940 eV
Core-core repulsion = 9434.283052 eV
Total energy + Delta-G solvation = -2585.438889 eV
No. of doubly occupied orbitals = 35
Molecular weight
(most abundant/longest-lived isotopes) = 259.959 amu
Computer time = 0.12 seconds
Orbital eigenvalues (eV)
-49.68993 -40.06264 -37.65239 -35.27797 -32.60281 -31.03691 -29.20051 -27.41797
-23.36223 -22.67204 -20.11137 -18.38174 -17.52856 -17.20820 -16.56656 -16.47236
-16.27660 -15.36541 -14.75611 -14.48410 -13.59360 -13.32279 -13.06712 -12.72806
-12.30959 -12.20592 -11.99048 -11.52720 -11.26383 -11.12683 -10.59052 -9.54178
-9.15914 -8.80203 -6.60846 0.47112 0.65039 1.27544 1.39797 1.47503
1.54212 2.16082 2.44462 3.22609 3.35206 3.87517 4.36092 4.61694
4.86729 5.11147 5.21041 5.40699 5.57912 5.69395 5.97322 6.36179
6.58261 6.66451 6.95030 8.13932
Molecular weight = 259.96amu
Principal moments of inertia in cm(-1)
A = 0.018957 B = 0.013331 C = 0.007993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1476.661764 B = 2099.899857 C = 3502.049666
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.805 5.805
2 C 0.037 3.963
3 Si 0.986 3.014
4 H -0.258 1.258
5 H -0.267 1.267
6 H -0.253 1.253
7 C -0.457 4.457
8 H 0.100 0.900
9 C 0.131 3.869
10 C -0.222 4.222
11 C 0.123 3.877
12 F -0.157 7.157
13 C -0.303 4.303
14 C 0.190 3.810
15 O -0.495 6.495
16 C -0.247 4.247
17 Br -0.063 7.063
18 H 0.297 0.703
19 H 0.124 0.876
20 H 0.135 0.865
21 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.327 -2.710 -0.114 5.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.429 5.429
2 C -0.181 4.181
3 Si 0.806 3.194
4 H -0.182 1.182
5 H -0.191 1.191
6 H -0.177 1.177
7 C -0.484 4.484
8 H 0.118 0.882
9 C 0.126 3.874
10 C -0.243 4.243
11 C 0.103 3.897
12 F -0.136 7.136
13 C -0.324 4.324
14 C 0.143 3.857
15 O -0.308 6.308
16 C -0.327 4.327
17 Br 0.021 6.979
18 H 0.108 0.892
19 H 0.142 0.858
20 H 0.153 0.847
21 H 0.263 0.737
Dipole moment (debyes) X Y Z Total
from point charges 5.278 -2.472 0.759 5.877
hybrid contribution -0.308 0.503 -0.775 0.973
sum 4.970 -1.970 -0.015 5.346
Atomic orbital electron populations
1.69836 1.09288 1.31642 1.32130 1.26922 0.95485 1.05016 0.90707
0.85113 0.79251 0.75142 0.79923 1.18220 1.19092 1.17658 1.20113
0.98454 0.90904 1.38926 0.88236 1.17312 0.90284 0.91941 0.87892
1.21283 1.01161 0.96306 1.05554 1.17582 0.84286 0.94926 0.92904
1.91361 1.51578 1.97575 1.73049 1.20584 1.03815 0.96713 1.11331
1.17500 0.91955 0.84209 0.92042 1.84697 1.64213 1.32197 1.49648
1.22166 1.02050 0.95874 1.12660 1.96255 1.35428 1.98927 1.67272
0.89226 0.85790 0.84680 0.73715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -39.33 10.87 21.82 0.24 -39.09 14
2 C 0.04 1.73 5.18 85.25 0.44 2.17 14
3 Si 0.99 35.14 29.59 68.60 2.03 37.17 14
4 H -0.26 -8.88 7.11 99.48 0.71 -8.17 14
5 H -0.27 -9.08 7.11 99.48 0.71 -8.38 14
6 H -0.25 -8.81 7.11 99.48 0.71 -8.10 14
7 C -0.46 -22.57 8.46 23.45 0.20 -22.37 14
8 H 0.10 4.73 6.88 -2.91 -0.02 4.71 14
9 C 0.13 6.64 5.57 -21.29 -0.12 6.52 14
10 C -0.22 -11.32 8.66 22.78 0.20 -11.13 14
11 C 0.12 5.81 7.28 22.31 0.16 5.97 14
12 F -0.16 -7.07 17.26 44.97 0.78 -6.29 14
13 C -0.30 -13.15 9.97 22.60 0.23 -12.92 14
14 C 0.19 8.14 6.68 22.46 0.15 8.29 14
15 O -0.50 -17.65 12.82 -92.59 -1.19 -18.83 14
16 C -0.25 -11.48 6.29 22.89 0.14 -11.33 14
17 Br -0.06 -2.54 31.53 -20.37 -0.64 -3.18 14
18 H 0.30 12.98 8.30 -92.70 -0.77 12.21 14
19 H 0.12 6.58 6.12 -2.91 -0.02 6.56 14
20 H 0.14 5.17 8.06 -2.91 -0.02 5.15 14
21 H 0.40 10.20 9.06 -74.05 -0.67 9.53 14
Total: -1.00 -54.75 219.90 3.23 -51.51
By element:
Atomic # 1 Polarization: 12.90 SS G_CDS: 0.62 Total: 13.52 kcal
Atomic # 6 Polarization: -36.20 SS G_CDS: 1.40 Total: -34.80 kcal
Atomic # 7 Polarization: -39.33 SS G_CDS: 0.24 Total: -39.09 kcal
Atomic # 8 Polarization: -17.65 SS G_CDS: -1.19 Total: -18.83 kcal
Atomic # 9 Polarization: -7.07 SS G_CDS: 0.78 Total: -6.29 kcal
Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal
Atomic # 35 Polarization: -2.54 SS G_CDS: -0.64 Total: -3.18 kcal
Total: -54.75 3.23 -51.51 kcal
The number of atoms in the molecule is 21
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000306364815.mol2 21
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.234 kcal
(2) G-P(sol) polarization free energy of solvation -54.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.980 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.12 seconds