Wall clock time and date at job start Mon Mar 30 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86805 * 120.00235 * 2 1 4 4 H 1.48500 * 109.47056 * 269.99909 * 3 2 1 5 5 H 1.48500 * 109.46665 * 29.99827 * 3 2 1 6 6 H 1.48497 * 109.47124 * 149.99457 * 3 2 1 7 7 C 1.39884 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99824 * 195.90869 * 7 2 1 9 9 C 1.41162 * 119.99883 * 16.17961 * 7 2 1 10 10 C 1.40844 * 120.17696 * 26.21535 * 9 7 2 11 11 C 1.36541 * 119.79999 * 180.02562 * 10 9 7 12 12 F 1.35106 * 119.91849 * 180.02562 * 11 10 9 13 13 C 1.39597 * 120.16918 * 359.97438 * 11 10 9 14 14 O 1.35728 * 119.81963 * 179.97438 * 13 11 10 15 15 C 1.39142 * 120.36310 * 0.02562 * 13 11 10 16 16 C 1.36620 * 120.19888 * 359.71718 * 15 13 11 17 17 Br 1.89096 * 120.09065 * 180.27734 * 16 15 13 18 18 H 0.97007 * 119.99882 * 4.99273 * 1 2 3 19 19 H 1.08002 * 120.10349 * 0.02803 * 10 9 7 20 20 H 0.96693 * 113.99688 * 89.99568 * 14 13 11 21 21 H 1.08001 * 119.90457 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.4905 2.0464 -1.4001 5 1 1.4404 2.6526 0.7000 6 1 3.5404 1.4402 0.7001 7 6 2.0083 -1.2114 -0.0005 8 1 3.0573 -1.2294 0.2558 9 6 1.3444 -2.4095 -0.3417 10 6 0.2140 -2.3782 -1.1813 11 6 -0.4226 -3.5417 -1.5060 12 9 -1.5068 -3.5145 -2.3116 13 6 0.0447 -4.7595 -1.0085 14 8 -0.5938 -5.9117 -1.3353 15 6 1.1608 -4.7984 -0.1785 16 6 1.8123 -3.6439 0.1516 17 35 3.3335 -3.7012 1.2734 18 1 -0.4850 0.8369 -0.0731 19 1 -0.1482 -1.4368 -1.5672 20 1 -0.2570 -6.3342 -2.1372 21 1 1.5162 -5.7447 0.2018 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306376142.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:14 Heat of formation + Delta-G solvation = -95.546813 kcal Electronic energy + Delta-G solvation = -12021.559092 eV Core-core repulsion = 9436.085509 eV Total energy + Delta-G solvation = -2585.473583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.69158 -39.95471 -37.75869 -35.35979 -32.49101 -31.24624 -29.72563 -26.89278 -23.55155 -22.62469 -19.68744 -19.06336 -17.86374 -17.14473 -16.66934 -16.52673 -15.74953 -15.03918 -14.61792 -14.53915 -13.71801 -13.58454 -13.19436 -12.81362 -12.66811 -12.25479 -11.89765 -11.30479 -11.21809 -11.03996 -10.70228 -9.59197 -9.26136 -8.81950 -6.55997 0.44594 0.65548 1.19324 1.40091 1.46674 1.54398 2.15985 2.41880 3.28675 3.52588 3.70684 4.21067 4.77065 4.81349 5.08923 5.19827 5.34692 5.51475 5.64512 5.95169 6.31130 6.56337 6.64557 7.06431 8.12063 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.012991 C = 0.007675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.242517 B = 2154.759247 C = 3647.153823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.038 3.962 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.452 4.452 8 H 0.102 0.898 9 C 0.120 3.880 10 C -0.205 4.205 11 C 0.092 3.908 12 F -0.157 7.157 13 C -0.073 4.073 14 O -0.495 6.495 15 C -0.045 4.045 16 C -0.205 4.205 17 Br -0.065 7.065 18 H 0.297 0.703 19 H 0.124 0.876 20 H 0.385 0.615 21 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.532 -2.414 0.021 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.479 4.479 8 H 0.120 0.880 9 C 0.115 3.885 10 C -0.227 4.227 11 C 0.072 3.928 12 F -0.136 7.136 13 C -0.120 4.120 14 O -0.304 6.304 15 C -0.065 4.065 16 C -0.286 4.286 17 Br 0.020 6.980 18 H 0.108 0.892 19 H 0.141 0.859 20 H 0.239 0.761 21 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.506 -2.165 1.008 6.002 hybrid contribution -0.360 0.539 -0.911 1.118 sum 5.147 -1.626 0.096 5.398 Atomic orbital electron populations 1.69862 1.09297 1.32050 1.31734 1.26916 0.95422 1.05033 0.90688 0.85141 0.79326 0.75254 0.79951 1.18226 1.19280 1.17456 1.20112 0.98586 0.91181 1.38049 0.88026 1.17488 0.90260 0.92420 0.88318 1.20901 1.01184 0.96093 1.04473 1.18065 0.85897 0.95336 0.93499 1.91342 1.53104 1.97570 1.71609 1.17764 1.00111 0.84051 1.10047 1.84800 1.60843 1.35951 1.48783 1.20560 0.92443 0.97534 0.95986 1.21291 1.01387 0.95879 1.09996 1.96297 1.37347 1.98893 1.65463 0.89154 0.85863 0.76085 0.84322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.13 10.96 21.82 0.24 -38.89 14 2 C 0.04 1.74 5.16 85.23 0.44 2.18 14 3 Si 0.98 34.68 29.59 68.60 2.03 36.71 14 4 H -0.26 -8.79 7.11 99.48 0.71 -8.09 14 5 H -0.27 -9.12 7.11 99.48 0.71 -8.42 14 6 H -0.25 -8.61 7.11 99.48 0.71 -7.90 14 7 C -0.45 -21.93 8.43 23.39 0.20 -21.74 14 8 H 0.10 4.71 6.90 -2.91 -0.02 4.69 14 9 C 0.12 6.00 5.56 -21.27 -0.12 5.89 14 10 C -0.21 -10.45 8.59 22.51 0.19 -10.26 14 11 C 0.09 4.44 7.26 22.20 0.16 4.61 14 12 F -0.16 -7.39 17.10 44.97 0.77 -6.62 14 13 C -0.07 -3.22 6.73 22.82 0.15 -3.06 14 14 O -0.49 -19.04 13.34 -90.51 -1.21 -20.25 14 15 C -0.04 -1.90 9.65 22.11 0.21 -1.69 14 16 C -0.21 -9.30 6.24 22.55 0.14 -9.16 14 17 Br -0.06 -2.48 32.08 -20.37 -0.65 -3.14 14 18 H 0.30 12.97 8.30 -92.70 -0.77 12.20 14 19 H 0.12 6.51 6.22 -2.91 -0.02 6.49 14 20 H 0.38 10.70 9.06 -74.06 -0.67 10.03 14 21 H 0.14 5.10 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -54.52 220.56 3.18 -51.34 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.62 Total: 14.08 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 1.38 Total: -33.24 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.24 Total: -38.89 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -1.21 Total: -20.25 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 0.77 Total: -6.62 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Atomic # 35 Polarization: -2.48 SS G_CDS: -0.65 Total: -3.14 kcal Total: -54.52 3.18 -51.34 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306376142.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.206 kcal (2) G-P(sol) polarization free energy of solvation -54.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds