Wall clock time and date at job start Mon Mar 30 2020 06:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47407 * 2 1 4 4 C 1.50701 * 109.47075 * 119.99762 * 2 1 3 5 5 H 1.07998 * 119.99742 * 120.00262 * 4 2 1 6 6 C 1.37879 * 120.00125 * 299.99661 * 4 2 1 7 7 N 1.31518 * 119.99575 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00040 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47020 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46815 * 120.00321 * 8 6 4 11 11 H 1.48497 * 109.47162 * 240.00299 * 8 6 4 12 12 C 1.50700 * 109.47343 * 240.00000 * 2 1 3 13 13 C 1.38268 * 119.97609 * 269.72817 * 12 2 1 14 14 C 1.38208 * 120.03444 * 180.27538 * 13 12 2 15 15 C 1.38338 * 120.00160 * 359.97438 * 14 13 12 16 16 Cl 1.73609 * 120.01998 * 180.02562 * 15 14 13 17 17 C 1.38443 * 119.96411 * 359.97438 * 15 14 13 18 18 Cl 1.73599 * 120.02211 * 180.02562 * 17 15 14 19 19 C 1.38205 * 119.98555 * 89.99888 * 12 2 1 20 20 H 1.08998 * 109.47216 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47082 * 300.00887 * 1 2 3 22 22 H 1.09009 * 109.46955 * 59.99914 * 1 2 3 23 23 H 0.96698 * 114.00026 * 180.02562 * 3 2 1 24 24 H 0.96997 * 119.99485 * 179.97438 * 7 6 4 25 25 H 1.07993 * 119.98440 * 0.24953 * 13 12 2 26 26 H 1.08003 * 119.99392 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.99316 * 359.74542 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.1464 -2.2869 3.6038 10 1 3.1466 -0.1871 4.8165 11 1 1.1661 -1.5864 4.8161 12 6 2.0324 -0.7104 -1.2304 13 6 2.2680 -2.0724 -1.1940 14 6 2.7342 -2.7241 -2.3201 15 6 2.9648 -2.0139 -3.4846 16 17 3.5497 -2.8322 -4.8996 17 6 2.7278 -0.6504 -3.5214 18 17 3.0160 0.2422 -4.9822 19 6 2.2626 0.0007 -2.3929 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5140 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 2.9704 1.4236 -0.0004 24 1 0.7082 1.1611 3.4843 25 1 2.0881 -2.6271 -0.2851 26 1 2.9184 -3.7879 -2.2908 27 1 2.0785 1.0645 -2.4205 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306430119.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:50 Heat of formation + Delta-G solvation = -59.160824 kcal Electronic energy + Delta-G solvation = -15142.812702 eV Core-core repulsion = 12337.514089 eV Total energy + Delta-G solvation = -2805.298613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68655 -38.23204 -37.48591 -36.99985 -34.33715 -32.53597 -31.82886 -29.77790 -27.30926 -24.28373 -23.73504 -21.47100 -19.01052 -18.40211 -17.10485 -16.70564 -16.50160 -15.82420 -15.22539 -15.01754 -14.75805 -14.36666 -13.80888 -13.12963 -12.98143 -12.86341 -12.85393 -12.74604 -12.57618 -12.44079 -12.11494 -12.01855 -11.93338 -11.81058 -10.99039 -10.59097 -10.26467 -9.83643 -9.46082 -8.03097 -6.29388 0.06227 0.21144 0.85995 1.21835 1.43662 1.48373 1.56743 2.42929 2.58669 3.19920 3.73915 3.96477 4.07152 4.32236 4.41435 4.52529 4.80377 4.94691 5.00219 5.09175 5.23965 5.45716 5.65008 5.72134 5.76061 5.97782 6.22949 6.77321 7.37745 7.57085 8.96104 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.032788 B = 0.006127 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.761789 B = 4568.535618 C = 5127.745222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.276 3.724 3 O -0.571 6.571 4 C -0.569 4.569 5 H 0.069 0.931 6 C 0.037 3.963 7 N -0.886 5.886 8 Si 0.949 3.051 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.283 1.283 12 C -0.076 4.076 13 C -0.092 4.092 14 C -0.097 4.097 15 C -0.048 4.048 16 Cl -0.052 7.052 17 C -0.037 4.037 18 Cl -0.055 7.055 19 C -0.101 4.101 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.025 0.975 23 H 0.358 0.642 24 H 0.258 0.742 25 H 0.145 0.855 26 H 0.164 0.836 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.836 -6.030 -10.690 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.237 3.763 3 O -0.375 6.375 4 C -0.606 4.606 5 H 0.087 0.913 6 C -0.166 4.166 7 N -0.523 5.523 8 Si 0.775 3.225 9 H -0.187 1.187 10 H -0.213 1.213 11 H -0.209 1.209 12 C -0.077 4.077 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.075 4.075 16 Cl -0.023 7.023 17 C -0.065 4.065 18 Cl -0.026 7.026 19 C -0.120 4.120 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.044 0.956 23 H 0.203 0.797 24 H 0.068 0.932 25 H 0.162 0.838 26 H 0.181 0.819 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.170 -5.775 -10.840 12.685 hybrid contribution 0.794 -0.190 0.757 1.113 sum 3.964 -5.966 -10.083 12.368 Atomic orbital electron populations 1.21526 0.95310 0.99896 1.00575 1.17710 0.91570 0.79334 0.87689 1.86486 1.24796 1.29320 1.96897 1.21980 1.33558 1.13826 0.91248 0.91285 1.25680 0.94318 0.94959 1.01628 1.70140 1.35663 1.22910 1.23556 0.85671 0.78115 0.78866 0.79875 1.18678 1.21335 1.20923 1.21240 0.95532 0.95130 0.95833 1.21418 0.96971 0.94190 0.98492 1.21276 0.98975 1.01394 0.89932 1.20783 1.05248 0.90906 0.90598 1.98350 1.86876 1.78379 1.38721 1.20766 1.05263 0.90987 0.89471 1.98348 1.94629 1.75010 1.34647 1.20915 0.99543 1.01089 0.90452 0.93156 0.91488 0.95612 0.79678 0.93230 0.83781 0.81853 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.36 8.60 71.98 0.62 -4.74 15 2 C 0.28 12.61 0.82 -12.29 -0.01 12.60 15 3 O -0.57 -27.22 11.36 -148.98 -1.69 -28.91 15 4 C -0.57 -27.74 7.58 25.60 0.19 -27.54 15 5 H 0.07 3.23 6.02 -2.91 -0.02 3.21 15 6 C 0.04 1.89 5.24 84.65 0.44 2.34 15 7 N -0.89 -48.21 10.87 21.45 0.23 -47.98 15 8 Si 0.95 40.35 29.54 68.60 2.03 42.37 15 9 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 10 H -0.29 -12.34 7.11 99.48 0.71 -11.63 15 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 12 C -0.08 -2.93 4.80 -19.87 -0.10 -3.03 15 13 C -0.09 -3.14 8.88 22.27 0.20 -2.94 15 14 C -0.10 -2.75 9.83 22.29 0.22 -2.53 15 15 C -0.05 -1.39 6.32 22.34 0.14 -1.25 15 16 Cl -0.05 -1.31 27.96 -2.72 -0.08 -1.38 15 17 C -0.04 -1.17 6.32 22.34 0.14 -1.03 15 18 Cl -0.06 -1.54 27.96 -2.72 -0.08 -1.62 15 19 C -0.10 -3.55 9.13 22.29 0.20 -3.34 15 20 H 0.05 2.17 8.14 -2.39 -0.02 2.15 15 21 H 0.07 3.50 6.07 -2.39 -0.01 3.48 15 22 H 0.02 1.10 8.14 -2.38 -0.02 1.08 15 23 H 0.36 15.37 9.03 -74.06 -0.67 14.70 15 24 H 0.26 13.53 8.31 -92.71 -0.77 12.76 15 25 H 0.14 4.93 6.41 -2.91 -0.02 4.91 15 26 H 0.16 3.59 8.06 -2.91 -0.02 3.57 15 27 H 0.14 4.87 7.49 -2.91 -0.02 4.85 15 Total: -1.00 -54.18 264.23 3.02 -51.16 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.55 Total: 17.83 kcal Atomic # 6 Polarization: -33.53 SS G_CDS: 2.05 Total: -31.47 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.23 Total: -47.98 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.69 Total: -28.91 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -2.85 SS G_CDS: -0.15 Total: -3.00 kcal Total: -54.18 3.02 -51.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306430119.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.999 kcal (2) G-P(sol) polarization free energy of solvation -54.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds