Wall clock time and date at job start Mon Mar 30 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86801 * 119.99924 * 2 1 4 4 H 1.48508 * 109.46878 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47005 * 120.00014 * 3 2 1 6 6 H 1.48500 * 109.47416 * 240.00113 * 3 2 1 7 7 C 1.39897 * 120.00263 * 179.72866 * 2 1 3 8 8 H 1.07998 * 120.00058 * 204.89628 * 7 2 1 9 9 C 1.41069 * 120.00178 * 24.89692 * 7 2 1 10 10 C 1.41378 * 120.26435 * 37.76162 * 9 7 2 11 11 O 1.35661 * 120.18168 * 359.97438 * 10 9 7 12 12 C 1.38212 * 119.63608 * 179.67648 * 10 9 7 13 13 C 1.38658 * 120.18123 * 0.62435 * 12 10 9 14 14 F 1.35098 * 119.72673 * 179.69231 * 13 12 10 15 15 C 1.39042 * 120.54335 * 359.67389 * 13 12 10 16 16 C 1.37558 * 120.35850 * 359.97438 * 15 13 12 17 17 Br 1.89093 * 120.09355 * 180.02562 * 16 15 13 18 18 H 0.97001 * 119.99550 * 185.56203 * 1 2 3 19 19 H 0.96695 * 113.99738 * 89.99673 * 11 10 9 20 20 H 1.08001 * 119.90388 * 180.31357 * 12 10 9 21 21 H 1.07997 * 119.81456 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6178 0.0000 4 1 1.2780 2.7465 0.0006 5 1 3.0968 1.6964 1.2125 6 1 3.0968 1.6965 -1.2125 7 6 2.0086 -1.2115 0.0057 8 1 3.0133 -1.2531 0.3997 9 6 1.4017 -2.3789 -0.5030 10 6 0.5705 -2.3103 -1.6447 11 8 0.3510 -1.1203 -2.2579 12 6 -0.0122 -3.4632 -2.1361 13 6 0.2067 -4.6784 -1.5053 14 9 -0.3724 -5.7986 -1.9899 15 6 1.0177 -4.7536 -0.3784 16 6 1.6146 -3.6213 0.1254 17 35 2.7167 -3.7322 1.6580 18 1 -0.4849 -0.8361 0.0814 19 1 0.9888 -0.9134 -2.9546 20 1 -0.6438 -3.4165 -3.0109 21 1 1.1805 -5.7063 0.1034 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306480620.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:26 Heat of formation + Delta-G solvation = -79.306464 kcal Electronic energy + Delta-G solvation = -12198.487724 eV Core-core repulsion = 9613.718375 eV Total energy + Delta-G solvation = -2584.769349 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 259.959 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.75656 -38.46825 -35.31283 -33.79164 -30.83212 -29.05260 -28.09399 -24.82905 -21.43836 -21.15828 -18.23771 -17.23353 -15.76785 -15.50397 -14.66495 -14.52921 -14.06923 -13.65702 -12.96083 -12.63928 -12.21795 -11.86512 -11.32117 -11.09528 -10.49003 -10.47161 -10.24043 -9.62504 -9.44819 -9.13708 -8.91325 -7.77099 -7.59720 -7.30475 -4.64473 2.13208 2.33492 2.83262 3.12504 3.15002 3.31446 3.95679 4.25234 4.94283 5.27479 5.65676 5.78636 6.04342 6.53841 6.70722 7.01965 7.06433 7.31270 7.60585 7.78989 7.85495 8.22790 8.59561 8.83340 9.96265 Molecular weight = 259.96amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.013058 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.051709 B = 2143.738414 C = 3389.523813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.044 3.956 3 Si 1.067 2.933 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.494 4.494 8 H 0.090 0.910 9 C 0.081 3.919 10 C 0.029 3.971 11 O -0.471 6.471 12 C -0.126 4.126 13 C -0.041 4.041 14 F -0.165 7.165 15 C -0.081 4.081 16 C -0.165 4.165 17 Br -0.083 7.083 18 H 0.297 0.703 19 H 0.361 0.639 20 H 0.113 0.887 21 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -2.176 0.396 4.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.183 4.183 3 Si 0.890 3.110 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.520 4.520 8 H 0.108 0.892 9 C 0.076 3.924 10 C -0.017 4.017 11 O -0.278 6.278 12 C -0.146 4.146 13 C -0.062 4.062 14 F -0.144 7.144 15 C -0.102 4.102 16 C -0.246 4.246 17 Br 0.002 6.998 18 H 0.110 0.890 19 H 0.214 0.786 20 H 0.131 0.869 21 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.812 -0.565 1.299 4.066 hybrid contribution 0.167 -2.027 -0.791 2.183 sum 3.979 -2.593 0.508 4.776 Atomic orbital electron populations 1.70351 1.08152 1.34183 1.23829 1.26932 0.95506 1.03883 0.91976 0.83592 0.75576 0.73859 0.77953 1.19816 1.20178 1.20004 1.20586 1.03089 0.93300 1.34990 0.89233 1.17795 0.91057 0.92061 0.91530 1.18044 1.04542 0.84279 0.94869 1.84950 1.54452 1.35039 1.53316 1.20921 1.01773 0.91403 1.00484 1.16688 1.06932 0.82048 1.00483 1.91320 1.84007 1.50930 1.88149 1.20467 0.97132 0.97449 0.95184 1.21101 1.09272 0.96139 0.98057 1.96332 1.67147 1.98599 1.37767 0.88974 0.78604 0.86862 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.10 12.02 55.55 0.67 -18.43 14 2 C 0.04 1.04 4.23 -17.32 -0.07 0.97 14 3 Si 1.07 20.51 30.00 -169.99 -5.10 15.41 14 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 5 H -0.28 -5.12 7.11 56.52 0.40 -4.71 14 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 14 7 C -0.49 -12.04 8.00 -37.89 -0.30 -12.34 14 8 H 0.09 2.16 7.39 -52.49 -0.39 1.78 14 9 C 0.08 1.98 4.99 -106.64 -0.53 1.45 14 10 C 0.03 0.69 5.70 -38.40 -0.22 0.47 14 11 O -0.47 -10.52 10.45 -18.69 -0.20 -10.71 14 12 C -0.13 -2.80 9.94 -39.44 -0.39 -3.19 14 13 C -0.04 -0.91 7.31 -39.13 -0.29 -1.20 14 14 F -0.16 -3.54 17.26 2.25 0.04 -3.50 14 15 C -0.08 -1.79 9.73 -39.53 -0.38 -2.18 14 16 C -0.17 -3.82 6.27 -38.84 -0.24 -4.07 14 17 Br -0.08 -1.69 32.32 -68.01 -2.20 -3.89 14 18 H 0.30 8.03 7.12 -40.82 -0.29 7.74 14 19 H 0.36 6.54 9.06 45.56 0.41 6.95 14 20 H 0.11 2.30 8.06 -52.49 -0.42 1.88 14 21 H 0.11 2.26 8.06 -52.49 -0.42 1.84 14 LS Contribution 219.23 15.07 3.30 3.30 Total: -1.00 -26.14 219.23 -5.82 -31.96 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 0.09 Total: 5.95 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -2.43 Total: -20.09 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.67 Total: -18.43 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -0.20 Total: -10.71 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.10 Total: 15.41 kcal Atomic # 35 Polarization: -1.69 SS G_CDS: -2.20 Total: -3.89 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.14 -5.82 -31.96 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306480620.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.344 kcal (2) G-P(sol) polarization free energy of solvation -26.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds