Wall clock time and date at job start Mon Mar 30 2020 07:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00211 * 2 1 4 4 H 1.48490 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46954 * 300.00487 * 3 2 1 6 6 H 1.48504 * 109.46609 * 60.00472 * 3 2 1 7 7 C 1.37882 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99903 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00153 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47378 * 179.97438 * 9 7 2 11 11 C 1.39992 * 120.00376 * 180.02562 * 10 9 7 12 12 C 1.38860 * 119.99017 * 359.72553 * 11 10 9 13 13 C 1.38214 * 120.00447 * 180.28339 * 12 11 10 14 14 Cl 1.73597 * 119.99817 * 180.02562 * 13 12 11 15 15 C 1.38905 * 119.99174 * 359.97438 * 13 12 11 16 16 N 1.40155 * 120.00280 * 179.97438 * 15 13 12 17 17 C 1.38912 * 119.99111 * 0.02562 * 15 13 12 18 18 Cl 1.73599 * 120.00645 * 179.97438 * 17 15 13 19 19 C 1.38203 * 119.99096 * 359.97438 * 17 15 13 20 20 H 0.96995 * 120.00358 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47343 * 60.00161 * 9 7 2 22 22 H 1.08997 * 109.47213 * 300.00481 * 9 7 2 23 23 H 0.97000 * 120.00036 * 0.02562 * 10 9 7 24 24 H 1.08002 * 119.99582 * 0.28062 * 12 11 10 25 25 H 0.97001 * 120.00073 * 180.02562 * 16 15 13 26 26 H 0.96996 * 120.00562 * 0.02717 * 16 15 13 27 27 H 1.08000 * 119.99734 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7363 -4.9326 -0.0025 12 6 0.3711 -5.1861 0.0036 13 6 -0.0899 -6.4891 0.0088 14 17 -1.7967 -6.8059 0.0158 15 6 0.8126 -7.5450 0.0073 16 7 0.3454 -8.8663 0.0130 17 6 2.1783 -7.2910 0.0011 18 17 3.3067 -8.6103 -0.0001 19 6 2.6387 -5.9879 -0.0041 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5568 -0.8903 22 1 0.6246 -2.5571 0.8896 23 1 3.1566 -3.4355 -0.0021 24 1 -0.3306 -4.3651 0.0044 25 1 0.9758 -9.6036 0.0124 26 1 -0.6082 -9.0436 0.0177 27 1 3.7005 -5.7904 -0.0084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306544284.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:03 Heat of formation + Delta-G solvation = 2.673722 kcal Electronic energy + Delta-G solvation = -14472.793566 eV Core-core repulsion = 11702.469052 eV Total energy + Delta-G solvation = -2770.324515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.018 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.35768 -36.54673 -36.45551 -35.35412 -33.48387 -32.06901 -30.26244 -28.10936 -25.79288 -23.35044 -22.16525 -20.88046 -17.73492 -17.07648 -16.51627 -16.00096 -14.95244 -14.35092 -14.20263 -14.06633 -13.95699 -13.13060 -12.82846 -12.68785 -12.13121 -12.11580 -11.13056 -11.11481 -11.03417 -10.95195 -10.81242 -10.76540 -10.59638 -10.21175 -9.41451 -8.78885 -8.43550 -8.26299 -6.31569 -6.23337 -4.28580 1.36505 1.93169 2.06281 2.60657 3.20762 3.28570 3.31731 3.99228 4.01469 4.22828 4.50527 5.14195 5.22007 5.50113 5.61832 5.80543 6.14825 6.31191 6.59111 6.73179 7.11930 7.38309 7.51497 7.60006 7.88227 7.90569 8.19748 8.60138 8.85898 9.37985 10.87231 Molecular weight = 260.02amu Principal moments of inertia in cm(-1) A = 0.026063 B = 0.005056 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.078612 B = 5536.790340 C = 6595.718788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.539 4.539 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.727 5.727 11 C 0.210 3.790 12 C -0.142 4.142 13 C -0.047 4.047 14 Cl -0.073 7.073 15 C 0.159 3.841 16 N -0.880 5.880 17 C -0.050 4.050 18 Cl -0.078 7.078 19 C -0.158 4.158 20 H 0.265 0.735 21 H 0.021 0.979 22 H 0.021 0.979 23 H 0.394 0.606 24 H 0.142 0.858 25 H 0.396 0.604 26 H 0.397 0.603 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -15.374 0.017 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.577 4.577 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.352 5.352 11 C 0.100 3.900 12 C -0.167 4.167 13 C -0.079 4.079 14 Cl -0.045 7.045 15 C 0.054 3.946 16 N -0.425 5.425 17 C -0.082 4.082 18 Cl -0.049 7.049 19 C -0.183 4.183 20 H 0.075 0.925 21 H 0.039 0.961 22 H 0.039 0.961 23 H 0.228 0.772 24 H 0.160 0.840 25 H 0.225 0.775 26 H 0.226 0.774 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.076 -15.120 0.017 15.158 hybrid contribution 0.544 0.538 -0.001 0.765 sum 1.620 -14.582 0.016 14.672 Atomic orbital electron populations 1.69947 1.06061 1.27288 1.49251 1.24927 0.94935 0.99459 0.94650 0.86361 0.79908 0.82921 0.77762 1.19638 1.20787 1.20781 1.21210 0.93413 0.90318 1.52748 0.91870 1.19140 0.88664 0.82630 0.96652 1.45431 1.09617 1.01605 1.78563 1.17479 0.91297 0.86025 0.95226 1.20524 0.94870 0.94964 1.06336 1.19804 0.83310 0.92899 1.11877 1.98318 1.13053 1.95754 1.97327 1.16682 0.89703 0.85359 1.02879 1.42366 1.09861 1.03171 1.87114 1.19682 0.87241 0.88561 1.12701 1.98308 1.61048 1.48169 1.97420 1.20251 0.99656 0.89272 1.09129 0.92479 0.96094 0.96081 0.77240 0.83983 0.77471 0.77384 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.06 13.29 55.43 0.74 -24.32 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.54 -14.17 9.28 -34.44 -0.32 -14.49 15 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 15 9 C 0.25 6.11 4.67 -5.20 -0.02 6.08 15 10 N -0.73 -14.59 5.74 -59.75 -0.34 -14.93 15 11 C 0.21 3.80 6.66 -83.67 -0.56 3.25 15 12 C -0.14 -2.58 9.09 -39.36 -0.36 -2.94 15 13 C -0.05 -0.75 6.33 -39.34 -0.25 -1.00 15 14 Cl -0.07 -1.04 27.58 -51.86 -1.43 -2.47 15 15 C 0.16 2.35 6.76 -83.55 -0.56 1.78 15 16 N -0.88 -10.32 9.01 32.51 0.29 -10.03 15 17 C -0.05 -0.74 6.33 -39.34 -0.25 -0.99 15 18 Cl -0.08 -0.97 27.58 -51.86 -1.43 -2.40 15 19 C -0.16 -2.49 9.67 -39.37 -0.38 -2.88 15 20 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 21 H 0.02 0.55 7.96 -51.93 -0.41 0.14 15 22 H 0.02 0.56 7.94 -51.93 -0.41 0.14 15 23 H 0.39 7.30 8.34 -40.82 -0.34 6.96 15 24 H 0.14 2.76 6.73 -52.49 -0.35 2.41 15 25 H 0.40 4.07 7.50 -40.82 -0.31 3.76 15 26 H 0.40 4.20 7.50 -40.82 -0.31 3.90 15 27 H 0.13 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -27.05 268.23 -8.04 -35.09 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -2.09 Total: 9.06 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.80 Total: -9.57 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.69 Total: -49.28 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -2.86 Total: -4.86 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.05 -8.04 -35.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306544284.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.768 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds