Wall clock time and date at job start Mon Mar 30 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46967 * 239.99685 * 3 2 1 5 5 H 1.48501 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46939 * 119.99544 * 3 2 1 7 7 C 1.37874 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47388 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46997 * 55.00153 * 10 9 7 12 12 O 1.42900 * 109.47186 * 295.00224 * 10 9 7 13 13 C 1.50694 * 109.47117 * 175.00055 * 10 9 7 14 14 C 1.38244 * 119.99311 * 95.00434 * 13 10 9 15 15 C 1.38198 * 120.02608 * 179.97438 * 14 13 10 16 16 C 1.38380 * 120.01543 * 0.04422 * 15 14 13 17 17 Cl 1.73603 * 120.01071 * 180.02562 * 16 15 14 18 18 C 1.38315 * 119.98694 * 359.97438 * 16 15 14 19 19 C 1.38337 * 119.99565 * 275.04214 * 13 10 9 20 20 Cl 1.73607 * 120.00658 * 0.02562 * 19 13 10 21 21 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47004 * 59.99715 * 9 7 2 23 23 H 1.09000 * 109.47216 * 300.00367 * 9 7 2 24 24 H 0.96700 * 113.99791 * 300.00477 * 12 10 9 25 25 H 1.07992 * 119.98735 * 0.02562 * 14 13 10 26 26 H 1.08002 * 119.99652 * 180.02562 * 15 14 13 27 27 H 1.07996 * 120.01293 * 179.73135 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 8 2.9876 -3.6542 -1.2205 13 6 1.4959 -4.9636 0.1243 14 6 1.1635 -5.6803 -1.0101 15 6 0.4767 -6.8743 -0.8973 16 6 0.1205 -7.3526 0.3513 17 17 -0.7417 -8.8528 0.4929 18 6 0.4523 -6.6358 1.4867 19 6 1.1399 -5.4406 1.3731 20 17 1.5559 -4.5396 2.7976 21 1 -0.4849 0.8402 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.4416 -3.7455 -2.0133 25 1 1.4414 -5.3075 -1.9848 26 1 0.2177 -7.4340 -1.7839 27 1 0.1707 -7.0066 2.4612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306818152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:06 Heat of formation + Delta-G solvation = -52.541484 kcal Electronic energy + Delta-G solvation = -14802.943763 eV Core-core repulsion = 11997.932186 eV Total energy + Delta-G solvation = -2805.011577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.64619 -37.00532 -36.38290 -35.92041 -32.91706 -31.27547 -30.84004 -28.79011 -24.97198 -22.82835 -22.30760 -20.54871 -17.77578 -16.53390 -16.07693 -15.61363 -15.04420 -14.51624 -13.96080 -13.90586 -13.74051 -13.43214 -12.42972 -12.27007 -12.08019 -11.80612 -11.25650 -11.06620 -10.98447 -10.91919 -10.81268 -10.51810 -10.38319 -10.19014 -9.23976 -9.15402 -8.86032 -8.40687 -8.30256 -6.03213 -4.04994 1.08368 1.16358 1.90316 2.43849 3.33747 3.37615 3.40889 3.53172 4.44199 4.73183 4.91414 4.92643 5.12755 5.31323 5.36357 5.50186 5.69522 5.99659 6.03413 6.18558 6.47161 6.56717 6.65710 7.47315 7.54129 7.93166 8.26693 8.36332 9.00406 9.58585 11.07967 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.005377 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.454013 B = 5206.170877 C = 5477.559437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.060 0.940 9 C 0.005 3.995 10 C 0.140 3.860 11 H 0.107 0.893 12 O -0.551 6.551 13 C -0.080 4.080 14 C -0.095 4.095 15 C -0.103 4.103 16 C -0.038 4.038 17 Cl -0.072 7.072 18 C -0.102 4.102 19 C -0.022 4.022 20 Cl -0.048 7.048 21 H 0.261 0.739 22 H 0.020 0.980 23 H 0.033 0.967 24 H 0.365 0.635 25 H 0.141 0.859 26 H 0.136 0.864 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -14.811 0.492 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.079 0.921 9 C -0.033 4.033 10 C 0.081 3.919 11 H 0.125 0.875 12 O -0.356 6.356 13 C -0.081 4.081 14 C -0.113 4.113 15 C -0.122 4.122 16 C -0.065 4.065 17 Cl -0.043 7.043 18 C -0.121 4.121 19 C -0.049 4.049 20 Cl -0.018 7.018 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.051 0.949 24 H 0.211 0.789 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.176 -14.670 1.055 14.709 hybrid contribution -0.287 0.769 -0.161 0.836 sum -0.111 -13.902 0.893 13.931 Atomic orbital electron populations 1.69960 1.06031 1.26804 1.50760 1.24996 0.94836 0.99255 0.95312 0.86620 0.79525 0.82924 0.78729 1.20172 1.21385 1.20209 1.21052 0.93237 0.90118 1.50544 0.92129 1.19726 0.93767 0.91297 0.98464 1.21336 0.94096 0.88988 0.87471 0.87524 1.86567 1.37390 1.96268 1.15385 1.21151 0.97201 0.98414 0.91366 1.20855 0.97825 0.93910 0.98699 1.21059 0.98529 0.96585 0.96047 1.20628 1.01286 0.89939 0.94627 1.98357 1.75634 1.31939 1.98379 1.20825 0.99048 0.93647 0.98621 1.20564 1.01857 0.93766 0.88681 1.98396 1.91861 1.74038 1.37543 0.92921 0.96181 0.94919 0.78852 0.84185 0.84593 0.84193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.64 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.51 -14.10 8.88 -34.44 -0.31 -14.41 15 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 9 C 0.00 0.11 4.64 -27.88 -0.13 -0.02 15 10 C 0.14 2.81 2.66 -27.89 -0.07 2.74 15 11 H 0.11 2.23 7.13 -51.93 -0.37 1.86 15 12 O -0.55 -10.63 12.74 -35.23 -0.45 -11.08 15 13 C -0.08 -1.36 5.07 -104.59 -0.53 -1.89 15 14 C -0.09 -1.35 9.30 -39.59 -0.37 -1.72 15 15 C -0.10 -1.31 9.83 -39.54 -0.39 -1.70 15 16 C -0.04 -0.50 6.32 -39.50 -0.25 -0.75 15 17 Cl -0.07 -0.82 28.96 -51.86 -1.50 -2.32 15 18 C -0.10 -1.43 9.62 -39.51 -0.38 -1.81 15 19 C -0.02 -0.35 6.31 -39.50 -0.25 -0.60 15 20 Cl -0.05 -0.79 27.20 -51.86 -1.41 -2.20 15 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.03 0.86 7.94 -51.93 -0.41 0.44 15 24 H 0.36 5.76 7.32 45.56 0.33 6.09 15 25 H 0.14 1.69 6.40 -52.49 -0.34 1.36 15 26 H 0.14 1.36 8.06 -52.49 -0.42 0.94 15 27 H 0.14 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 270.24 15.07 4.07 4.07 Total: -1.00 -29.84 270.24 -7.94 -37.78 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -1.59 Total: 1.45 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.77 Total: -18.63 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.64 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.45 Total: -11.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -2.91 Total: -4.52 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.84 -7.94 -37.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306818152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.760 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds