Wall clock time and date at job start Mon Mar 30 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00052 * 2 1 4 4 H 1.48500 * 109.46967 * 239.99685 * 3 2 1 5 5 H 1.48501 * 109.47154 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46939 * 119.99544 * 3 2 1 7 7 C 1.37874 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47388 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46997 * 55.00153 * 10 9 7 12 12 O 1.42900 * 109.47186 * 295.00224 * 10 9 7 13 13 C 1.50694 * 109.47117 * 175.00055 * 10 9 7 14 14 C 1.38244 * 119.99311 * 95.00434 * 13 10 9 15 15 C 1.38198 * 120.02608 * 179.97438 * 14 13 10 16 16 C 1.38380 * 120.01543 * 0.04422 * 15 14 13 17 17 Cl 1.73603 * 120.01071 * 180.02562 * 16 15 14 18 18 C 1.38315 * 119.98694 * 359.97438 * 16 15 14 19 19 C 1.38337 * 119.99565 * 275.04214 * 13 10 9 20 20 Cl 1.73607 * 120.00658 * 0.02562 * 19 13 10 21 21 H 0.97007 * 119.99423 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47004 * 59.99715 * 9 7 2 23 23 H 1.09000 * 109.47216 * 300.00367 * 9 7 2 24 24 H 0.96700 * 113.99791 * 300.00477 * 12 10 9 25 25 H 1.07992 * 119.98735 * 0.02562 * 14 13 10 26 26 H 1.08002 * 119.99652 * 180.02562 * 15 14 13 27 27 H 1.07996 * 120.01293 * 179.73135 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 8 2.9876 -3.6542 -1.2205 13 6 1.4959 -4.9636 0.1243 14 6 1.1635 -5.6803 -1.0101 15 6 0.4767 -6.8743 -0.8973 16 6 0.1205 -7.3526 0.3513 17 17 -0.7417 -8.8528 0.4929 18 6 0.4523 -6.6358 1.4867 19 6 1.1399 -5.4406 1.3731 20 17 1.5559 -4.5396 2.7976 21 1 -0.4849 0.8402 -0.0004 22 1 0.6247 -2.5570 -0.8897 23 1 0.6240 -2.5567 0.8902 24 1 2.4416 -3.7455 -2.0133 25 1 1.4414 -5.3075 -1.9848 26 1 0.2177 -7.4340 -1.7839 27 1 0.1707 -7.0066 2.4612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306818152.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:06 Heat of formation + Delta-G solvation = -70.765011 kcal Electronic energy + Delta-G solvation = -14803.733994 eV Core-core repulsion = 11997.932186 eV Total energy + Delta-G solvation = -2805.801808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.011 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.85748 -38.28775 -37.65532 -37.09686 -34.98109 -32.70614 -31.95164 -30.52600 -26.72760 -24.05066 -23.85590 -22.03702 -19.14353 -18.28529 -17.37894 -17.17094 -16.61872 -16.01221 -15.36960 -15.21829 -15.05248 -14.77320 -14.27133 -13.50608 -13.41988 -13.10716 -12.92019 -12.78396 -12.55874 -12.35966 -12.18183 -12.04751 -11.96606 -11.74765 -11.20556 -10.78346 -10.55971 -9.98749 -9.56648 -8.18264 -6.26945 -0.07372 0.05664 0.81690 1.27733 1.41158 1.43042 1.50999 2.37325 2.44268 3.14958 3.54399 3.66586 3.74819 3.95893 4.14455 4.32747 4.53561 4.65508 4.75413 4.89662 5.05696 5.21691 5.41724 5.52024 5.63313 5.78727 6.22571 6.83904 6.91565 7.40690 8.92696 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.032383 B = 0.005377 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.454013 B = 5206.170877 C = 5477.559437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.013 3.987 10 C 0.156 3.844 11 H 0.092 0.908 12 O -0.559 6.559 13 C -0.105 4.105 14 C -0.094 4.094 15 C -0.094 4.094 16 C -0.036 4.036 17 Cl -0.051 7.051 18 C -0.103 4.103 19 C -0.035 4.035 20 Cl -0.062 7.062 21 H 0.263 0.737 22 H 0.002 0.998 23 H 0.009 0.991 24 H 0.380 0.620 25 H 0.160 0.840 26 H 0.169 0.831 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -15.979 -0.285 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.024 4.024 10 C 0.097 3.903 11 H 0.110 0.890 12 O -0.366 6.366 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.063 4.063 17 Cl -0.022 7.022 18 C -0.122 4.122 19 C -0.062 4.062 20 Cl -0.033 7.033 21 H 0.071 0.929 22 H 0.021 0.979 23 H 0.028 0.972 24 H 0.229 0.771 25 H 0.178 0.822 26 H 0.186 0.814 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.269 -15.854 0.270 15.858 hybrid contribution -0.367 1.003 0.050 1.069 sum -0.098 -14.851 0.320 14.855 Atomic orbital electron populations 1.70076 1.07484 1.27675 1.51807 1.25825 0.95662 1.02827 0.94975 0.85617 0.78367 0.78716 0.79065 1.19306 1.20888 1.19581 1.21417 0.93250 0.91755 1.50085 0.92633 1.19543 0.94022 0.92474 0.96357 1.20807 0.92797 0.89252 0.87429 0.89008 1.86518 1.37879 1.96325 1.15856 1.20902 0.98979 0.97926 0.92870 1.21120 0.97348 0.94163 0.98593 1.21394 0.96974 0.95827 0.97073 1.20804 1.00495 0.90415 0.94549 1.98371 1.75030 1.30453 1.98351 1.20992 0.98442 0.92854 0.99934 1.20705 1.02873 0.94628 0.88008 1.98384 1.92082 1.74596 1.38263 0.92853 0.97938 0.97223 0.77127 0.82223 0.81352 0.82606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.26 15 2 C 0.00 0.28 5.46 84.65 0.46 0.74 15 3 Si 0.96 44.39 29.54 68.60 2.03 46.41 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 15 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 7 C -0.53 -29.52 8.88 25.60 0.23 -29.29 15 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 15 9 C 0.01 0.67 4.64 29.85 0.14 0.81 15 10 C 0.16 6.35 2.66 29.85 0.08 6.43 15 11 H 0.09 3.95 7.13 -2.38 -0.02 3.94 15 12 O -0.56 -21.30 12.74 -148.98 -1.90 -23.20 15 13 C -0.11 -3.54 5.07 -19.84 -0.10 -3.64 15 14 C -0.09 -2.50 9.30 22.26 0.21 -2.29 15 15 C -0.09 -2.09 9.83 22.29 0.22 -1.87 15 16 C -0.04 -0.84 6.32 22.32 0.14 -0.70 15 17 Cl -0.05 -1.01 28.96 -2.72 -0.08 -1.09 15 18 C -0.10 -2.72 9.62 22.32 0.21 -2.51 15 19 C -0.04 -1.13 6.31 22.32 0.14 -0.99 15 20 Cl -0.06 -2.11 27.20 -2.72 -0.07 -2.18 15 21 H 0.26 14.87 8.31 -92.70 -0.77 14.10 15 22 H 0.00 0.12 8.14 -2.39 -0.02 0.10 15 23 H 0.01 0.52 7.94 -2.39 -0.02 0.50 15 24 H 0.38 11.62 7.32 -74.06 -0.54 11.08 15 25 H 0.16 3.48 6.40 -2.91 -0.02 3.46 15 26 H 0.17 2.64 8.06 -2.91 -0.02 2.61 15 27 H 0.16 3.52 8.06 -2.91 -0.02 3.49 15 Total: -1.00 -63.87 270.24 2.65 -61.21 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.66 Total: 7.43 kcal Atomic # 6 Polarization: -35.05 SS G_CDS: 1.73 Total: -33.32 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.28 Total: -55.26 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.90 Total: -23.20 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.15 Total: -3.27 kcal Total: -63.87 2.65 -61.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306818152.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.552 kcal (2) G-P(sol) polarization free energy of solvation -63.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds